Wall clock time and date at job start Wed Apr 1 2020 03:43:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34635 * 117.00495 * 2 1 4 4 O 1.21516 * 119.99617 * 359.97438 * 3 2 1 5 5 N 1.34770 * 120.00624 * 179.97438 * 3 2 1 6 6 C 1.46498 * 120.00364 * 179.97438 * 5 3 2 7 7 C 1.53042 * 109.46049 * 205.00118 * 6 5 3 8 8 C 1.53191 * 109.31129 * 178.62897 * 7 6 5 9 9 N 1.46925 * 108.77765 * 54.63311 * 8 7 6 10 10 C 1.34775 * 120.63026 * 126.36934 * 9 8 7 11 11 O 1.21278 * 120.00248 * 359.97438 * 10 9 8 12 12 C 1.50707 * 119.99826 * 179.97438 * 10 9 8 13 13 C 1.50702 * 109.46876 * 179.97438 * 12 10 9 14 14 C 1.37636 * 120.13298 * 265.00052 * 13 12 10 15 15 C 1.38610 * 120.24856 * 179.97438 * 14 13 12 16 16 C 1.38657 * 120.50115 * 0.02562 * 15 14 13 17 17 C 1.37594 * 120.25136 * 359.97438 * 16 15 14 18 18 C 1.40705 * 120.12024 * 85.26015 * 13 12 10 19 19 C 1.41391 * 120.24871 * 0.02562 * 18 13 12 20 20 H 1.08005 * 119.99677 * 334.27449 * 19 18 13 21 21 C 1.39944 * 120.00108 * 154.27693 * 19 18 13 22 22 N 1.30818 * 119.99816 * 343.65995 * 21 19 18 23 23 Si 1.86800 * 119.99967 * 163.66543 * 21 19 18 24 24 H 1.48491 * 109.47398 * 359.97438 * 23 21 19 25 25 H 1.48505 * 109.47083 * 119.99778 * 23 21 19 26 26 H 1.48498 * 109.46937 * 239.99532 * 23 21 19 27 27 C 1.46930 * 118.73900 * 306.64277 * 9 8 7 28 28 C 1.52762 * 109.00761 * 53.30822 * 27 9 8 29 29 H 1.09010 * 109.46838 * 60.00228 * 1 2 3 30 30 H 1.09001 * 109.47381 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47560 * 300.00388 * 1 2 3 32 32 H 0.97009 * 119.99414 * 359.97438 * 5 3 2 33 33 H 1.09002 * 109.45850 * 324.97440 * 6 5 3 34 34 H 1.08994 * 109.49951 * 58.67461 * 7 6 5 35 35 H 1.09002 * 109.51805 * 298.59383 * 7 6 5 36 36 H 1.08997 * 109.58675 * 294.84609 * 8 7 6 37 37 H 1.09006 * 109.70432 * 174.48884 * 8 7 6 38 38 H 1.09008 * 109.46793 * 59.99921 * 12 10 9 39 39 H 1.08995 * 109.47048 * 299.99947 * 12 10 9 40 40 H 1.07995 * 119.87268 * 359.97438 * 14 13 12 41 41 H 1.07998 * 119.74858 * 180.02562 * 15 14 13 42 42 H 1.08003 * 119.87397 * 180.02562 * 16 15 14 43 43 H 1.07995 * 120.12994 * 179.97438 * 17 16 15 44 44 H 0.97001 * 119.99886 * 180.02562 * 22 21 19 45 45 H 1.08996 * 109.58484 * 173.14223 * 27 9 8 46 46 H 1.09000 * 109.58405 * 293.56863 * 27 9 8 47 47 H 1.09002 * 109.56543 * 185.55134 * 28 27 9 48 48 H 1.09004 * 109.38727 * 65.51390 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1996 0.0000 4 8 1.4015 2.2187 -0.0005 5 7 3.4092 1.2701 0.0005 6 6 4.0743 2.5754 0.0000 7 6 5.4713 2.4355 -0.6092 8 6 6.1505 3.8083 -0.6396 9 7 6.1374 4.3725 0.7170 10 6 7.2790 4.7937 1.2965 11 8 8.3303 4.7084 0.6979 12 6 7.2491 5.3707 2.6884 13 6 8.6451 5.7611 3.1005 14 6 9.4183 4.8897 3.8335 15 6 10.7029 5.2462 4.2132 16 6 11.2236 6.4820 3.8609 17 6 10.4686 7.3689 3.1283 18 6 9.1611 7.0200 2.7418 19 6 8.3738 7.9257 1.9941 20 1 7.5875 7.5557 1.3528 21 6 8.6135 9.3015 2.0850 22 7 9.3254 9.7774 3.0740 23 14 7.9169 10.4582 0.7943 24 1 7.1545 9.6760 -0.2117 25 1 7.0140 11.4409 1.4458 26 1 9.0288 11.1774 0.1223 27 6 4.8571 4.4632 1.4321 28 6 4.1915 3.0882 1.4371 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 3.9374 0.4565 0.0013 33 1 3.4895 3.2807 -0.5906 34 1 5.3883 2.0482 -1.6246 35 1 6.0648 1.7491 -0.0053 36 1 5.6082 4.4694 -1.3155 37 1 7.1802 3.7014 -0.9809 38 1 6.8608 4.6251 3.3825 39 1 6.6060 6.2506 2.7033 40 1 9.0227 3.9248 4.1138 41 1 11.3027 4.5560 4.7880 42 1 12.2258 6.7491 4.1618 43 1 10.8760 8.3311 2.8553 44 1 9.4912 10.7311 3.1372 45 1 5.0338 4.7858 2.4581 46 1 4.2072 5.1788 0.9285 47 1 3.1977 3.1653 1.8782 48 1 4.7965 2.3955 2.0223 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000856448578.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:43:10 Heat of formation + Delta-G solvation = -99.868799 kcal Electronic energy + Delta-G solvation = -30397.630768 eV Core-core repulsion = 26224.046168 eV Total energy + Delta-G solvation = -4173.584600 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.85709 -39.84013 -38.11160 -37.20533 -36.36848 -34.75859 -33.59103 -32.24662 -31.20004 -30.96603 -29.42008 -27.94760 -26.90933 -25.17248 -24.53949 -23.38393 -21.79990 -21.12813 -20.88653 -20.01417 -19.04957 -18.36911 -17.36286 -17.12766 -16.77043 -16.64236 -15.66642 -15.36975 -15.29839 -15.05797 -14.54286 -14.44035 -14.33474 -14.00423 -13.68307 -13.55975 -13.45650 -12.94035 -12.65559 -12.51555 -12.46971 -12.41104 -12.06911 -11.69071 -11.55184 -11.39393 -11.30562 -11.14742 -11.08198 -11.02121 -10.93880 -10.87719 -10.78244 -10.63981 -10.35796 -9.51880 -9.44922 -9.32161 -9.14612 -9.11422 -8.41655 -7.28463 -7.25889 -6.70902 -4.31140 1.87113 2.52843 2.79957 2.97351 3.09872 3.15350 3.28979 3.29753 3.38032 3.91961 3.96545 4.40779 4.55642 4.68645 4.79750 4.85762 4.87700 4.92650 5.11416 5.13587 5.16841 5.34401 5.44544 5.53668 5.63893 5.73669 5.77841 5.83757 5.88649 5.91799 6.03694 6.09037 6.11563 6.15551 6.30431 6.45028 6.53560 6.76403 6.84019 7.07702 7.11925 7.32496 7.45245 7.65396 7.77553 7.95966 8.02531 8.10405 8.16147 8.34601 8.67877 8.81692 8.94980 9.04686 10.23379 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.014755 B = 0.002554 C = 0.002319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1897.253156 B =10961.900175 C =12068.864934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 O -0.375 6.375 3 C 0.645 3.355 4 O -0.570 6.570 5 N -0.704 5.704 6 C 0.163 3.837 7 C -0.140 4.140 8 C 0.117 3.883 9 N -0.628 5.628 10 C 0.520 3.480 11 O -0.519 6.519 12 C -0.069 4.069 13 C -0.182 4.182 14 C -0.081 4.081 15 C -0.240 4.240 16 C -0.107 4.107 17 C -0.159 4.159 18 C 0.129 3.871 19 C -0.455 4.455 20 H 0.074 0.926 21 C 0.077 3.923 22 N -0.795 5.795 23 Si 0.902 3.098 24 H -0.261 1.261 25 H -0.275 1.275 26 H -0.272 1.272 27 C 0.113 3.887 28 C -0.147 4.147 29 H 0.063 0.937 30 H 0.102 0.898 31 H 0.063 0.937 32 H 0.406 0.594 33 H 0.094 0.906 34 H 0.080 0.920 35 H 0.075 0.925 36 H 0.065 0.935 37 H 0.099 0.901 38 H 0.075 0.925 39 H 0.096 0.904 40 H 0.083 0.917 41 H 0.085 0.915 42 H 0.086 0.914 43 H 0.116 0.884 44 H 0.279 0.721 45 H 0.095 0.905 46 H 0.070 0.930 47 H 0.080 0.920 48 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.590 -15.012 -5.329 21.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 O -0.289 6.289 3 C 0.398 3.602 4 O -0.459 6.459 5 N -0.363 5.363 6 C 0.060 3.940 7 C -0.179 4.179 8 C -0.007 4.007 9 N -0.365 5.365 10 C 0.310 3.690 11 O -0.392 6.392 12 C -0.109 4.109 13 C -0.184 4.184 14 C -0.099 4.099 15 C -0.259 4.259 16 C -0.125 4.125 17 C -0.178 4.178 18 C 0.126 3.874 19 C -0.485 4.485 20 H 0.092 0.908 21 C -0.141 4.141 22 N -0.421 5.421 23 Si 0.727 3.273 24 H -0.185 1.185 25 H -0.200 1.200 26 H -0.198 1.198 27 C -0.011 4.011 28 C -0.186 4.186 29 H 0.082 0.918 30 H 0.120 0.880 31 H 0.082 0.918 32 H 0.241 0.759 33 H 0.112 0.888 34 H 0.099 0.901 35 H 0.094 0.906 36 H 0.084 0.916 37 H 0.117 0.883 38 H 0.093 0.907 39 H 0.115 0.885 40 H 0.101 0.899 41 H 0.103 0.897 42 H 0.104 0.896 43 H 0.134 0.866 44 H 0.090 0.910 45 H 0.113 0.887 46 H 0.088 0.912 47 H 0.099 0.901 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -14.320 -14.337 -5.556 21.011 hybrid contribution -0.325 0.190 -0.488 0.616 sum -14.645 -14.147 -6.043 21.240 Atomic orbital electron populations 1.23192 0.74330 1.03438 1.02814 1.86239 1.24290 1.31270 1.87120 1.18202 0.83574 0.82175 0.76278 1.91018 1.64584 1.34811 1.55477 1.44854 1.02856 1.10631 1.77914 1.21046 0.92926 0.82741 0.97329 1.22231 0.94450 0.99346 1.01854 1.21388 1.02704 0.92102 0.84510 1.48283 1.07738 1.64455 1.16012 1.21266 0.82302 0.76484 0.88967 1.90669 1.30029 1.53731 1.64811 1.20295 0.98667 1.00498 0.91419 1.19066 0.94190 0.97868 1.07248 1.20281 0.94409 0.96586 0.98650 1.20300 0.97022 0.98067 1.10560 1.20671 0.97871 0.94503 0.99499 1.21290 0.94336 0.99538 1.02671 1.17346 0.91130 0.90224 0.88683 1.19495 1.15723 0.90323 1.22930 0.90766 1.25879 0.93899 0.99378 0.94909 1.69827 1.31085 1.15056 1.26125 0.86356 0.79496 0.79943 0.81515 1.18492 1.20039 1.19753 1.21546 0.84799 0.96011 0.98737 1.22306 1.01883 0.97870 0.96581 0.91842 0.88012 0.91774 0.75892 0.88757 0.90105 0.90608 0.91635 0.88297 0.90694 0.88544 0.89850 0.89707 0.89618 0.86568 0.91045 0.88699 0.91196 0.90140 0.90967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.36 10.56 101.05 1.07 1.43 16 2 O -0.38 -3.45 10.61 -40.31 -0.43 -3.88 16 3 C 0.65 6.99 8.71 54.05 0.47 7.46 16 4 O -0.57 -7.91 15.80 -19.28 -0.30 -8.22 16 5 N -0.70 -6.10 5.08 -58.69 -0.30 -6.40 16 6 C 0.16 1.52 2.42 -67.89 -0.16 1.36 16 7 C -0.14 -1.25 5.55 -26.61 -0.15 -1.40 16 8 C 0.12 1.42 6.44 -3.71 -0.02 1.40 16 9 N -0.63 -9.07 2.98 -173.03 -0.52 -9.58 16 10 C 0.52 9.98 7.35 -10.98 -0.08 9.90 16 11 O -0.52 -12.18 15.45 5.56 0.09 -12.10 16 12 C -0.07 -1.34 3.53 -29.03 -0.10 -1.45 16 13 C -0.18 -4.37 4.43 -103.91 -0.46 -4.83 16 14 C -0.08 -1.87 9.66 -39.66 -0.38 -2.25 16 15 C -0.24 -5.61 10.05 -39.29 -0.39 -6.01 16 16 C -0.11 -2.62 10.02 -39.66 -0.40 -3.02 16 17 C -0.16 -4.27 8.68 -38.87 -0.34 -4.61 16 18 C 0.13 3.44 5.56 -106.82 -0.59 2.85 16 19 C -0.45 -11.97 8.15 -37.74 -0.31 -12.28 16 20 H 0.07 1.91 6.68 -52.48 -0.35 1.56 16 21 C 0.08 1.93 5.16 -17.34 -0.09 1.84 16 22 N -0.80 -20.59 10.97 55.55 0.61 -19.98 16 23 Si 0.90 18.98 29.59 -169.99 -5.03 13.95 16 24 H -0.26 -5.50 7.11 56.52 0.40 -5.10 16 25 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 26 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 27 C 0.11 1.30 6.31 -3.93 -0.02 1.27 16 28 C -0.15 -1.45 5.63 -26.83 -0.15 -1.60 16 29 H 0.06 0.41 8.14 -51.92 -0.42 -0.01 16 30 H 0.10 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.41 2.64 8.71 -40.82 -0.36 2.28 16 33 H 0.09 1.01 7.58 -51.93 -0.39 0.61 16 34 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.10 1.40 7.00 -51.93 -0.36 1.03 16 38 H 0.07 1.22 7.59 -51.92 -0.39 0.83 16 39 H 0.10 1.86 6.86 -51.93 -0.36 1.50 16 40 H 0.08 1.69 8.06 -52.49 -0.42 1.26 16 41 H 0.08 1.76 8.06 -52.49 -0.42 1.33 16 42 H 0.09 1.88 8.06 -52.48 -0.42 1.46 16 43 H 0.12 3.21 6.22 -52.49 -0.33 2.88 16 44 H 0.28 6.57 8.30 -40.82 -0.34 6.23 16 45 H 0.09 1.06 5.93 -51.93 -0.31 0.75 16 46 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 47 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 48 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 LS Contribution 392.32 15.07 5.91 5.91 Total: -1.00 -33.27 392.32 -9.14 -42.42 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: -7.06 Total: 7.81 kcal Atomic # 6 Polarization: -7.80 SS G_CDS: -2.12 Total: -9.93 kcal Atomic # 7 Polarization: -35.76 SS G_CDS: -0.20 Total: -35.97 kcal Atomic # 8 Polarization: -23.55 SS G_CDS: -0.65 Total: -24.19 kcal Atomic # 14 Polarization: 18.98 SS G_CDS: -5.03 Total: 13.95 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -33.27 -9.14 -42.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000856448578.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.451 kcal (2) G-P(sol) polarization free energy of solvation -33.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds