Wall clock time and date at job start Wed Apr 1 2020 04:11:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86806 * 120.00092 * 2 1 4 4 H 1.48504 * 109.46859 * 268.42314 * 3 2 1 5 5 H 1.48503 * 109.47133 * 28.41896 * 3 2 1 6 6 H 1.48500 * 109.47052 * 148.42423 * 3 2 1 7 7 C 1.38808 * 119.99880 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99858 * 339.85729 * 7 2 1 9 9 N 1.36941 * 119.99997 * 159.86251 * 7 2 1 10 10 C 1.47088 * 121.00749 * 155.19664 * 9 7 2 11 11 C 1.53262 * 109.22510 * 116.43417 * 10 9 7 12 12 N 1.46552 * 109.24350 * 45.97717 * 11 10 9 13 13 N 1.39750 * 127.32004 * 161.47726 * 12 11 10 14 14 C 1.31012 * 108.17377 * 179.16410 * 13 12 11 15 15 C 1.40072 * 108.25487 * 0.52986 * 14 13 12 16 16 C 1.50704 * 126.12344 * 179.97438 * 15 14 13 17 17 N 1.46498 * 109.47021 * 259.69079 * 16 15 14 18 18 C 1.34779 * 119.99463 * 179.72431 * 17 16 15 19 19 O 1.21274 * 120.00462 * 0.28081 * 18 17 16 20 20 C 1.50704 * 119.99387 * 180.27789 * 18 17 16 21 21 H 1.08997 * 115.56797 * 34.39157 * 20 18 17 22 22 C 1.53186 * 117.52035 * 248.60407 * 20 18 17 23 23 C 1.52105 * 59.77049 * 252.58658 * 22 20 18 24 24 C 1.53705 * 121.73973 * 111.10705 * 23 22 20 25 25 C 1.54694 * 103.69830 * 143.46509 * 24 23 22 26 26 O 1.44499 * 104.86556 * 23.84384 * 25 24 23 27 27 C 1.44634 * 105.46708 * 320.02236 * 26 25 24 28 28 C 1.34645 * 107.74954 * 359.67938 * 15 14 13 29 29 C 1.47491 * 121.00894 * 335.17116 * 9 7 2 30 30 H 0.97005 * 119.99744 * 359.97438 * 1 2 3 31 31 H 1.09001 * 109.51126 * 356.51031 * 10 9 7 32 32 H 1.08997 * 109.54938 * 236.38142 * 10 9 7 33 33 H 1.08999 * 109.50836 * 286.04630 * 11 10 9 34 34 H 1.08993 * 109.54335 * 165.93091 * 11 10 9 35 35 H 1.07997 * 125.87253 * 180.38936 * 14 13 12 36 36 H 1.09001 * 109.46928 * 139.69347 * 16 15 14 37 37 H 1.08991 * 109.47040 * 19.69661 * 16 15 14 38 38 H 0.96995 * 120.00437 * 0.02562 * 17 16 15 39 39 H 1.08995 * 117.52380 * 0.02562 * 22 20 18 40 40 H 1.09003 * 117.51660 * 145.16110 * 22 20 18 41 41 H 1.09002 * 110.57902 * 262.02113 * 24 23 22 42 42 H 1.09004 * 110.57800 * 24.91167 * 24 23 22 43 43 H 1.08999 * 110.36088 * 142.68813 * 25 24 23 44 44 H 1.08997 * 110.36153 * 264.99718 * 25 24 23 45 45 H 1.08998 * 110.41450 * 280.88194 * 27 26 25 46 46 H 1.09002 * 110.41973 * 158.42253 * 27 26 25 47 47 H 1.09000 * 109.94514 * 103.62325 * 29 9 7 48 48 H 1.09004 * 109.95109 * 342.36953 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.5311 2.0271 -1.3996 5 1 1.4314 2.6622 0.6663 6 1 3.5307 1.4500 0.7331 7 6 2.0102 -1.2021 -0.0005 8 1 1.5197 -2.1090 0.3211 9 7 3.3168 -1.2382 -0.4088 10 6 4.2278 -2.2944 0.0583 11 6 4.6813 -3.1359 -1.1397 12 7 5.0680 -2.2448 -2.2371 13 7 5.8562 -2.5605 -3.3471 14 6 5.9495 -1.4918 -4.0992 15 6 5.2322 -0.4580 -3.4836 16 6 5.0746 0.9470 -4.0052 17 7 6.0047 1.8354 -3.3039 18 6 6.0449 3.1471 -3.6113 19 8 5.3076 3.5928 -4.4648 20 6 7.0062 4.0598 -2.8943 21 1 7.9625 3.6143 -2.6205 22 6 6.4143 5.1053 -1.9440 23 6 7.0001 5.5309 -3.2817 24 6 6.1146 6.0633 -4.4196 25 6 6.9834 7.1617 -5.0766 26 8 8.3440 6.8067 -4.7437 27 6 8.2985 6.3481 -3.3727 28 6 4.7034 -0.9464 -2.3457 29 6 3.8532 -0.2196 -1.3308 30 1 -0.4850 0.8401 0.0004 31 1 3.7095 -2.9312 0.7752 32 1 5.0970 -1.8416 0.5352 33 1 3.8629 -3.7786 -1.4637 34 1 5.5344 -3.7501 -0.8517 35 1 6.4888 -1.4196 -5.0321 36 1 4.0522 1.2848 -3.8360 37 1 5.2909 0.9645 -5.0733 38 1 6.5947 1.4790 -2.6215 39 1 5.3299 5.1325 -1.8373 40 1 6.9818 5.3479 -1.0455 41 1 5.8926 5.2713 -5.1349 42 1 5.1941 6.4901 -4.0211 43 1 6.8445 7.1590 -6.1577 44 1 6.7347 8.1394 -4.6639 45 1 8.2628 7.1962 -2.6891 46 1 9.1606 5.7180 -3.1537 47 1 4.4627 0.4966 -0.7797 48 1 3.0343 0.2960 -1.8326 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001069880068.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:11:37 Heat of formation + Delta-G solvation = 62.091815 kcal Electronic energy + Delta-G solvation = -30962.477218 eV Core-core repulsion = 26828.208509 eV Total energy + Delta-G solvation = -4134.268709 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.179 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.27751 -40.63065 -38.86794 -36.69065 -36.05309 -34.92460 -33.09249 -31.78331 -30.60826 -30.43389 -29.37894 -27.73264 -26.35482 -25.43150 -24.11837 -23.30359 -22.85335 -21.85823 -20.58619 -20.28918 -19.59509 -18.86648 -17.35491 -16.90705 -16.50748 -16.23197 -16.02682 -15.79107 -15.49083 -15.30001 -15.07194 -14.83389 -14.43143 -14.14246 -14.01967 -13.64504 -13.50280 -13.27801 -12.95144 -12.92738 -12.73452 -12.56315 -12.41856 -12.24157 -11.94482 -11.69661 -11.64257 -11.47295 -11.13266 -10.85529 -10.69395 -10.57427 -10.50253 -10.35263 -10.30148 -9.95468 -9.75046 -9.50075 -8.97288 -8.93661 -8.88638 -8.20725 -7.40086 -6.16850 -3.58135 2.14126 2.46454 2.69232 2.78035 3.15977 3.28253 3.33853 3.34421 3.53656 3.79482 4.25221 4.30295 4.37981 4.50597 4.56621 4.70001 4.73522 4.91494 4.92997 5.01133 5.15859 5.21116 5.22455 5.28725 5.34335 5.35525 5.39797 5.41736 5.50159 5.51114 5.58818 5.61095 5.71862 5.84239 5.88022 5.91966 5.97369 6.09853 6.16569 6.21972 6.29641 6.39310 6.54211 6.58225 6.85573 7.28050 7.55006 7.58043 7.99333 8.07097 8.27513 8.59544 9.43057 9.72664 10.98087 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.011871 B = 0.003332 C = 0.002815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2358.066612 B = 8402.174209 C = 9945.920453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.031 3.969 3 Si 0.874 3.126 4 H -0.281 1.281 5 H -0.297 1.297 6 H -0.271 1.271 7 C -0.273 4.273 8 H 0.094 0.906 9 N -0.606 5.606 10 C 0.132 3.868 11 C 0.112 3.888 12 N -0.353 5.353 13 N -0.308 5.308 14 C 0.059 3.941 15 C -0.282 4.282 16 C 0.206 3.794 17 N -0.718 5.718 18 C 0.541 3.459 19 O -0.537 6.537 20 C -0.174 4.174 21 H 0.125 0.875 22 C -0.135 4.135 23 C -0.129 4.129 24 C -0.129 4.129 25 C 0.045 3.955 26 O -0.375 6.375 27 C 0.083 3.917 28 C 0.121 3.879 29 C 0.177 3.823 30 H 0.267 0.733 31 H 0.095 0.905 32 H 0.041 0.959 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.179 0.821 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.400 0.600 39 H 0.105 0.895 40 H 0.109 0.891 41 H 0.115 0.885 42 H 0.077 0.923 43 H 0.091 0.909 44 H 0.056 0.944 45 H 0.068 0.932 46 H 0.092 0.908 47 H 0.055 0.945 48 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.082 7.650 -4.388 18.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.169 4.169 3 Si 0.703 3.297 4 H -0.208 1.208 5 H -0.224 1.224 6 H -0.196 1.196 7 C -0.401 4.401 8 H 0.111 0.889 9 N -0.329 5.329 10 C 0.004 3.996 11 C -0.011 4.011 12 N -0.133 5.133 13 N -0.128 5.128 14 C -0.127 4.127 15 C -0.294 4.294 16 C 0.082 3.918 17 N -0.368 5.368 18 C 0.328 3.672 19 O -0.415 6.415 20 C -0.195 4.195 21 H 0.143 0.857 22 C -0.172 4.172 23 C -0.130 4.130 24 C -0.166 4.166 25 C -0.032 4.032 26 O -0.294 6.294 27 C 0.006 3.994 28 C -0.011 4.011 29 C 0.050 3.950 30 H 0.077 0.923 31 H 0.113 0.887 32 H 0.059 0.941 33 H 0.100 0.900 34 H 0.104 0.896 35 H 0.196 0.804 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.234 0.766 39 H 0.123 0.877 40 H 0.127 0.873 41 H 0.133 0.867 42 H 0.095 0.905 43 H 0.109 0.891 44 H 0.075 0.925 45 H 0.086 0.914 46 H 0.110 0.890 47 H 0.072 0.928 48 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 15.812 6.677 -4.856 17.838 hybrid contribution 0.269 1.340 0.431 1.433 sum 16.081 8.017 -4.425 18.506 Atomic orbital electron populations 1.69807 1.05632 1.27002 1.51418 1.25211 0.95255 0.97557 0.98914 0.87146 0.79811 0.84851 0.77850 1.20775 1.22426 1.19604 1.18868 0.83949 0.95321 1.41922 0.88882 1.44497 1.09023 1.28942 1.50448 1.21333 0.94105 0.91450 0.92700 1.22570 1.00250 0.92706 0.85588 1.48523 1.38079 1.08454 1.18293 1.77233 1.14901 1.23584 0.97063 1.23703 0.99313 0.90260 0.99469 1.19442 1.12979 0.97474 0.99514 1.19373 0.93187 0.83733 0.95498 1.46218 1.41332 1.07807 1.41470 1.19595 0.82962 0.82174 0.82495 1.90590 1.42678 1.75057 1.33189 1.22223 1.01202 0.91004 1.05058 0.85674 1.22946 1.01900 0.99383 0.93006 1.22130 0.98752 0.94325 0.97768 1.22730 0.97240 0.99267 0.97407 1.23523 0.81547 0.97150 1.00970 1.89150 1.27280 1.85053 1.27887 1.22795 0.95602 0.96474 0.84549 1.21817 0.96146 0.86095 0.97019 1.20521 0.95132 0.91175 0.88175 0.92295 0.88708 0.94140 0.89966 0.89638 0.80391 0.90991 0.90741 0.76565 0.87658 0.87301 0.86653 0.90465 0.89083 0.92546 0.91384 0.88996 0.92781 0.88169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.18 13.97 55.49 0.78 -25.41 16 2 C 0.03 0.85 5.26 -17.43 -0.09 0.75 16 3 Si 0.87 20.76 24.15 -169.99 -4.11 16.65 16 4 H -0.28 -6.50 6.47 56.52 0.37 -6.13 16 5 H -0.30 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.27 -6.18 6.61 56.52 0.37 -5.81 16 7 C -0.27 -7.08 10.10 -15.06 -0.15 -7.23 16 8 H 0.09 2.55 8.06 -52.49 -0.42 2.13 16 9 N -0.61 -13.21 2.81 -172.97 -0.49 -13.70 16 10 C 0.13 2.25 6.49 -3.59 -0.02 2.22 16 11 C 0.11 1.75 7.44 -3.88 -0.03 1.72 16 12 N -0.35 -6.26 4.03 -56.94 -0.23 -6.49 16 13 N -0.31 -5.26 12.61 30.70 0.39 -4.87 16 14 C 0.06 0.88 11.97 -17.21 -0.21 0.68 16 15 C -0.28 -4.48 5.46 -105.20 -0.57 -5.06 16 16 C 0.21 3.04 5.95 -5.19 -0.03 3.01 16 17 N -0.72 -9.47 5.55 -61.47 -0.34 -9.81 16 18 C 0.54 7.48 7.61 -10.98 -0.08 7.40 16 19 O -0.54 -8.97 13.34 5.56 0.07 -8.90 16 20 C -0.17 -1.85 6.07 -92.12 -0.56 -2.41 16 21 H 0.13 1.03 8.14 -51.93 -0.42 0.61 16 22 C -0.13 -1.32 10.01 -27.09 -0.27 -1.59 16 23 C -0.13 -1.34 2.50 -154.69 -0.39 -1.73 16 24 C -0.13 -1.48 5.96 -25.47 -0.15 -1.63 16 25 C 0.04 0.45 7.65 38.05 0.29 0.74 16 26 O -0.38 -4.36 11.65 -35.23 -0.41 -4.77 16 27 C 0.08 0.76 7.44 37.51 0.28 1.04 16 28 C 0.12 2.22 6.71 -82.17 -0.55 1.67 16 29 C 0.18 3.62 4.24 -4.49 -0.02 3.60 16 30 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 31 H 0.09 1.50 7.94 -51.93 -0.41 1.09 16 32 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 34 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 35 H 0.18 2.02 8.06 -52.49 -0.42 1.60 16 36 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 37 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.40 4.61 8.46 -40.82 -0.35 4.26 16 39 H 0.11 1.18 8.14 -51.93 -0.42 0.76 16 40 H 0.11 0.81 8.14 -51.93 -0.42 0.38 16 41 H 0.12 1.60 5.48 -51.93 -0.28 1.31 16 42 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.09 0.72 8.12 -51.93 -0.42 0.29 16 47 H 0.05 1.09 6.41 -51.93 -0.33 0.75 16 48 H 0.10 2.28 5.12 -51.93 -0.27 2.02 16 LS Contribution 382.84 15.07 5.77 5.77 Total: -1.00 -32.34 382.84 -8.31 -40.64 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: -7.18 Total: 7.69 kcal Atomic # 6 Polarization: 5.75 SS G_CDS: -2.56 Total: 3.19 kcal Atomic # 7 Polarization: -60.38 SS G_CDS: 0.11 Total: -60.28 kcal Atomic # 8 Polarization: -13.33 SS G_CDS: -0.34 Total: -13.67 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -4.11 Total: 16.65 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.34 -8.31 -40.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001069880068.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.736 kcal (2) G-P(sol) polarization free energy of solvation -32.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.645 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds