Wall clock time and date at job start Wed Apr 1 2020 04:11:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86806 * 120.00092 * 2 1 4 4 H 1.48504 * 109.46859 * 268.42314 * 3 2 1 5 5 H 1.48503 * 109.47133 * 28.41896 * 3 2 1 6 6 H 1.48500 * 109.47052 * 148.42423 * 3 2 1 7 7 C 1.38808 * 119.99880 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99858 * 339.85729 * 7 2 1 9 9 N 1.36941 * 119.99997 * 159.86251 * 7 2 1 10 10 C 1.47088 * 121.00749 * 155.19664 * 9 7 2 11 11 C 1.53262 * 109.22510 * 116.43417 * 10 9 7 12 12 N 1.46552 * 109.24350 * 45.97717 * 11 10 9 13 13 N 1.39750 * 127.32004 * 161.47726 * 12 11 10 14 14 C 1.31012 * 108.17377 * 179.16410 * 13 12 11 15 15 C 1.40072 * 108.25487 * 0.52986 * 14 13 12 16 16 C 1.50704 * 126.12344 * 179.97438 * 15 14 13 17 17 N 1.46498 * 109.47021 * 259.69079 * 16 15 14 18 18 C 1.34779 * 119.99463 * 179.72431 * 17 16 15 19 19 O 1.21274 * 120.00462 * 0.28081 * 18 17 16 20 20 C 1.50704 * 119.99387 * 180.27789 * 18 17 16 21 21 H 1.08997 * 115.56797 * 34.39157 * 20 18 17 22 22 C 1.53186 * 117.52035 * 248.60407 * 20 18 17 23 23 C 1.52105 * 59.77049 * 252.58658 * 22 20 18 24 24 C 1.53705 * 121.73973 * 111.10705 * 23 22 20 25 25 C 1.54694 * 103.69830 * 143.46509 * 24 23 22 26 26 O 1.44499 * 104.86556 * 23.84384 * 25 24 23 27 27 C 1.44634 * 105.46708 * 320.02236 * 26 25 24 28 28 C 1.34645 * 107.74954 * 359.67938 * 15 14 13 29 29 C 1.47491 * 121.00894 * 335.17116 * 9 7 2 30 30 H 0.97005 * 119.99744 * 359.97438 * 1 2 3 31 31 H 1.09001 * 109.51126 * 356.51031 * 10 9 7 32 32 H 1.08997 * 109.54938 * 236.38142 * 10 9 7 33 33 H 1.08999 * 109.50836 * 286.04630 * 11 10 9 34 34 H 1.08993 * 109.54335 * 165.93091 * 11 10 9 35 35 H 1.07997 * 125.87253 * 180.38936 * 14 13 12 36 36 H 1.09001 * 109.46928 * 139.69347 * 16 15 14 37 37 H 1.08991 * 109.47040 * 19.69661 * 16 15 14 38 38 H 0.96995 * 120.00437 * 0.02562 * 17 16 15 39 39 H 1.08995 * 117.52380 * 0.02562 * 22 20 18 40 40 H 1.09003 * 117.51660 * 145.16110 * 22 20 18 41 41 H 1.09002 * 110.57902 * 262.02113 * 24 23 22 42 42 H 1.09004 * 110.57800 * 24.91167 * 24 23 22 43 43 H 1.08999 * 110.36088 * 142.68813 * 25 24 23 44 44 H 1.08997 * 110.36153 * 264.99718 * 25 24 23 45 45 H 1.08998 * 110.41450 * 280.88194 * 27 26 25 46 46 H 1.09002 * 110.41973 * 158.42253 * 27 26 25 47 47 H 1.09000 * 109.94514 * 103.62325 * 29 9 7 48 48 H 1.09004 * 109.95109 * 342.36953 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.5311 2.0271 -1.3996 5 1 1.4314 2.6622 0.6663 6 1 3.5307 1.4500 0.7331 7 6 2.0102 -1.2021 -0.0005 8 1 1.5197 -2.1090 0.3211 9 7 3.3168 -1.2382 -0.4088 10 6 4.2278 -2.2944 0.0583 11 6 4.6813 -3.1359 -1.1397 12 7 5.0680 -2.2448 -2.2371 13 7 5.8562 -2.5605 -3.3471 14 6 5.9495 -1.4918 -4.0992 15 6 5.2322 -0.4580 -3.4836 16 6 5.0746 0.9470 -4.0052 17 7 6.0047 1.8354 -3.3039 18 6 6.0449 3.1471 -3.6113 19 8 5.3076 3.5928 -4.4648 20 6 7.0062 4.0598 -2.8943 21 1 7.9625 3.6143 -2.6205 22 6 6.4143 5.1053 -1.9440 23 6 7.0001 5.5309 -3.2817 24 6 6.1146 6.0633 -4.4196 25 6 6.9834 7.1617 -5.0766 26 8 8.3440 6.8067 -4.7437 27 6 8.2985 6.3481 -3.3727 28 6 4.7034 -0.9464 -2.3457 29 6 3.8532 -0.2196 -1.3308 30 1 -0.4850 0.8401 0.0004 31 1 3.7095 -2.9312 0.7752 32 1 5.0970 -1.8416 0.5352 33 1 3.8629 -3.7786 -1.4637 34 1 5.5344 -3.7501 -0.8517 35 1 6.4888 -1.4196 -5.0321 36 1 4.0522 1.2848 -3.8360 37 1 5.2909 0.9645 -5.0733 38 1 6.5947 1.4790 -2.6215 39 1 5.3299 5.1325 -1.8373 40 1 6.9818 5.3479 -1.0455 41 1 5.8926 5.2713 -5.1349 42 1 5.1941 6.4901 -4.0211 43 1 6.8445 7.1590 -6.1577 44 1 6.7347 8.1394 -4.6639 45 1 8.2628 7.1962 -2.6891 46 1 9.1606 5.7180 -3.1537 47 1 4.4627 0.4966 -0.7797 48 1 3.0343 0.2960 -1.8326 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001069880068.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:11:36 Heat of formation + Delta-G solvation = 38.727139 kcal Electronic energy + Delta-G solvation = -30963.490387 eV Core-core repulsion = 26828.208509 eV Total energy + Delta-G solvation = -4135.281878 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.179 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.58471 -41.53774 -39.82276 -38.26080 -36.92634 -36.10470 -34.69491 -33.43316 -32.08322 -31.33406 -30.63599 -28.58056 -27.85534 -26.75804 -25.54524 -24.40991 -23.65192 -23.29814 -21.64601 -21.51632 -20.60156 -20.25045 -18.72040 -18.39420 -17.71992 -17.32346 -16.94190 -16.86797 -16.83327 -16.51700 -16.24101 -15.96948 -15.75438 -15.41685 -15.22258 -15.10166 -14.84334 -14.51222 -14.32488 -14.10368 -13.96061 -13.74900 -13.40676 -13.28288 -13.23547 -13.11749 -13.00251 -12.45175 -12.44074 -12.34686 -12.19274 -11.91197 -11.82078 -11.62369 -11.48506 -11.17630 -10.90816 -10.69596 -10.51958 -10.22213 -10.08516 -9.53531 -9.21328 -8.25895 -5.62843 0.78333 1.24933 1.32923 1.40454 1.45865 1.48527 1.56199 2.31934 2.34548 2.67123 2.83021 3.04008 3.14927 3.44534 3.49958 3.54438 3.59059 3.76930 3.91274 4.01721 4.06856 4.11651 4.14615 4.22105 4.27220 4.35130 4.37437 4.42675 4.47084 4.50886 4.67008 4.69715 4.72685 4.75229 4.82347 4.83610 4.85720 4.94162 4.95538 5.04390 5.08794 5.24157 5.51951 5.64565 5.68484 5.81395 5.93270 6.03180 6.55209 6.65221 6.73225 7.23909 7.42349 7.79267 8.92672 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.011871 B = 0.003332 C = 0.002815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2358.066612 B = 8402.174209 C = 9945.920453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.027 4.027 3 Si 0.934 3.066 4 H -0.279 1.279 5 H -0.308 1.308 6 H -0.250 1.250 7 C -0.255 4.255 8 H 0.067 0.933 9 N -0.621 5.621 10 C 0.130 3.870 11 C 0.115 3.885 12 N -0.362 5.362 13 N -0.319 5.319 14 C 0.069 3.931 15 C -0.268 4.268 16 C 0.211 3.789 17 N -0.711 5.711 18 C 0.533 3.467 19 O -0.573 6.573 20 C -0.177 4.177 21 H 0.156 0.844 22 C -0.127 4.127 23 C -0.134 4.134 24 C -0.133 4.133 25 C 0.047 3.953 26 O -0.397 6.397 27 C 0.084 3.916 28 C 0.097 3.903 29 C 0.182 3.818 30 H 0.264 0.736 31 H 0.103 0.897 32 H 0.062 0.938 33 H 0.074 0.926 34 H 0.120 0.880 35 H 0.217 0.783 36 H 0.043 0.957 37 H 0.087 0.913 38 H 0.411 0.589 39 H 0.085 0.915 40 H 0.140 0.860 41 H 0.087 0.913 42 H 0.072 0.928 43 H 0.094 0.906 44 H 0.073 0.927 45 H 0.087 0.913 46 H 0.109 0.891 47 H 0.063 0.937 48 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.830 8.025 -4.220 21.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.222 4.222 3 Si 0.762 3.238 4 H -0.206 1.206 5 H -0.236 1.236 6 H -0.174 1.174 7 C -0.384 4.384 8 H 0.085 0.915 9 N -0.346 5.346 10 C 0.004 3.996 11 C -0.008 4.008 12 N -0.144 5.144 13 N -0.139 5.139 14 C -0.117 4.117 15 C -0.280 4.280 16 C 0.087 3.913 17 N -0.362 5.362 18 C 0.322 3.678 19 O -0.453 6.453 20 C -0.198 4.198 21 H 0.174 0.826 22 C -0.164 4.164 23 C -0.135 4.135 24 C -0.170 4.170 25 C -0.029 4.029 26 O -0.316 6.316 27 C 0.007 3.993 28 C -0.034 4.034 29 C 0.056 3.944 30 H 0.073 0.927 31 H 0.121 0.879 32 H 0.080 0.920 33 H 0.092 0.908 34 H 0.138 0.862 35 H 0.233 0.767 36 H 0.061 0.939 37 H 0.105 0.895 38 H 0.247 0.753 39 H 0.104 0.896 40 H 0.158 0.842 41 H 0.106 0.894 42 H 0.090 0.910 43 H 0.112 0.888 44 H 0.091 0.909 45 H 0.105 0.895 46 H 0.127 0.873 47 H 0.080 0.920 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 19.632 7.018 -4.668 21.365 hybrid contribution -0.899 1.109 0.299 1.459 sum 18.733 8.128 -4.369 20.883 Atomic orbital electron populations 1.69939 1.07327 1.27430 1.54666 1.25805 0.95765 1.00768 0.99906 0.86177 0.79094 0.80674 0.77859 1.20580 1.23649 1.17445 1.18830 0.85747 0.94160 1.39617 0.91486 1.44592 1.08456 1.30313 1.51204 1.21552 0.93885 0.90506 0.93692 1.22561 1.01421 0.92220 0.84557 1.48698 1.38416 1.08280 1.18977 1.77232 1.15128 1.24368 0.97143 1.24269 0.98427 0.88889 1.00095 1.19536 1.11991 0.97974 0.98499 1.19212 0.92219 0.83482 0.96381 1.46111 1.40960 1.07626 1.41486 1.20229 0.83014 0.82444 0.82156 1.90594 1.44240 1.75646 1.34827 1.22319 1.01617 0.90594 1.05223 0.82615 1.23034 1.01214 0.98282 0.93868 1.22202 0.99311 0.94294 0.97669 1.22648 0.97788 0.99060 0.97548 1.23553 0.80812 0.97287 1.01249 1.89122 1.27788 1.85308 1.29399 1.22976 0.95339 0.97167 0.83771 1.21544 0.97387 0.86858 0.97647 1.20285 0.94549 0.91158 0.88416 0.92732 0.87869 0.92006 0.90789 0.86156 0.76705 0.93853 0.89529 0.75321 0.89607 0.84159 0.89434 0.90975 0.88806 0.90852 0.89505 0.87260 0.91959 0.91151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.60 13.97 21.65 0.30 -57.30 16 2 C -0.03 -1.48 5.26 84.86 0.45 -1.03 16 3 Si 0.93 43.85 24.15 68.60 1.66 45.51 16 4 H -0.28 -12.86 6.47 99.48 0.64 -12.22 16 5 H -0.31 -14.90 7.11 99.48 0.71 -14.20 16 6 H -0.25 -10.76 6.61 99.48 0.66 -10.10 16 7 C -0.25 -13.44 10.10 84.03 0.85 -12.59 16 8 H 0.07 3.81 8.06 -2.91 -0.02 3.79 16 9 N -0.62 -26.74 2.81 -701.15 -1.97 -28.71 16 10 C 0.13 4.17 6.49 86.35 0.56 4.73 16 11 C 0.11 3.33 7.44 86.46 0.64 3.97 16 12 N -0.36 -12.05 4.03 -334.04 -1.35 -13.40 16 13 N -0.32 -9.96 12.61 -56.80 -0.72 -10.68 16 14 C 0.07 1.85 11.97 85.26 1.02 2.87 16 15 C -0.27 -7.98 5.46 -20.24 -0.11 -8.09 16 16 C 0.21 6.03 5.95 85.63 0.51 6.54 16 17 N -0.71 -17.54 5.55 -466.79 -2.59 -20.13 16 18 C 0.53 14.14 7.61 87.66 0.67 14.81 16 19 O -0.57 -19.30 13.34 -3.01 -0.04 -19.34 16 20 C -0.18 -3.32 6.07 -11.77 -0.07 -3.39 16 21 H 0.16 1.93 8.14 -2.39 -0.02 1.91 16 22 C -0.13 -2.16 10.01 30.36 0.30 -1.86 16 23 C -0.13 -2.51 2.50 -52.30 -0.13 -2.64 16 24 C -0.13 -3.00 5.96 31.41 0.19 -2.81 16 25 C 0.05 0.89 7.65 72.56 0.56 1.45 16 26 O -0.40 -8.45 11.65 -148.98 -1.74 -10.18 16 27 C 0.08 1.28 7.44 72.21 0.54 1.82 16 28 C 0.10 3.41 6.71 41.31 0.28 3.68 16 29 C 0.18 7.33 4.24 85.55 0.36 7.70 16 30 H 0.26 15.32 8.31 -92.70 -0.77 14.55 16 31 H 0.10 3.11 7.94 -2.39 -0.02 3.09 16 32 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 34 H 0.12 2.66 8.14 -2.39 -0.02 2.64 16 35 H 0.22 3.95 8.06 -2.91 -0.02 3.92 16 36 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 38 H 0.41 8.36 8.46 -92.71 -0.78 7.58 16 39 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 40 H 0.14 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.09 2.50 5.48 -2.39 -0.01 2.48 16 42 H 0.07 1.63 8.14 -2.38 -0.02 1.61 16 43 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 44 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 45 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 46 H 0.11 1.28 8.12 -2.39 -0.02 1.26 16 47 H 0.06 2.39 6.41 -2.39 -0.02 2.37 16 48 H 0.07 3.25 5.12 -2.39 -0.01 3.24 16 Total: -1.00 -72.69 382.84 0.26 -72.42 By element: Atomic # 1 Polarization: 26.56 SS G_CDS: 0.09 Total: 26.65 kcal Atomic # 6 Polarization: 8.55 SS G_CDS: 6.61 Total: 15.15 kcal Atomic # 7 Polarization: -123.89 SS G_CDS: -6.32 Total: -130.21 kcal Atomic # 8 Polarization: -27.75 SS G_CDS: -1.78 Total: -29.53 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 1.66 Total: 45.51 kcal Total: -72.69 0.26 -72.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001069880068.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.149 kcal (2) G-P(sol) polarization free energy of solvation -72.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.422 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds