Wall clock time and date at job start Wed Apr 1 2020 03:25:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42901 * 114.00049 * 2 1 4 4 H 1.09000 * 110.43610 * 27.45917 * 3 2 1 5 5 C 1.54887 * 110.48537 * 264.77900 * 3 2 1 6 6 C 1.54894 * 102.74564 * 203.37886 * 5 3 2 7 7 C 1.54266 * 104.19827 * 37.94400 * 6 5 3 8 8 H 1.08995 * 110.07640 * 95.69386 * 7 6 5 9 9 N 1.46500 * 110.03113 * 217.10522 * 7 6 5 10 10 C 1.34773 * 120.00319 * 272.16417 * 9 7 6 11 11 O 1.21361 * 119.99640 * 359.97438 * 10 9 7 12 12 C 1.49343 * 120.00236 * 179.97438 * 10 9 7 13 13 O 1.21371 * 120.00118 * 0.02562 * 12 10 9 14 14 N 1.34781 * 119.99831 * 179.72022 * 12 10 9 15 15 C 1.39725 * 119.99831 * 175.65791 * 14 12 10 16 16 C 1.38936 * 120.07703 * 214.82667 * 15 14 12 17 17 C 1.38091 * 119.92151 * 179.74782 * 16 15 14 18 18 C 1.38296 * 120.08030 * 0.52875 * 17 16 15 19 19 C 1.50697 * 119.92576 * 179.76789 * 18 17 16 20 20 C 1.50703 * 109.47059 * 269.97751 * 19 18 17 21 21 H 1.08008 * 119.99788 * 359.97438 * 20 19 18 22 22 C 1.37871 * 120.00058 * 179.97438 * 20 19 18 23 23 N 1.31517 * 120.00068 * 179.97438 * 22 20 19 24 24 Si 1.86802 * 120.00154 * 359.97438 * 22 20 19 25 25 H 1.48504 * 109.47211 * 89.99549 * 24 22 20 26 26 H 1.48500 * 109.47533 * 209.99968 * 24 22 20 27 27 H 1.48498 * 109.46981 * 330.00418 * 24 22 20 28 28 C 1.38290 * 120.15034 * 359.74292 * 18 17 16 29 29 C 1.38100 * 120.07651 * 359.97438 * 28 18 17 30 30 C 1.53877 * 106.59451 * 336.38983 * 7 6 5 31 31 H 1.09003 * 109.47028 * 299.99694 * 1 2 3 32 32 H 1.08998 * 109.47318 * 59.99588 * 1 2 3 33 33 H 1.09002 * 109.46979 * 180.02562 * 1 2 3 34 34 H 1.09000 * 110.75613 * 321.69004 * 5 3 2 35 35 H 1.08999 * 110.75633 * 84.87929 * 5 3 2 36 36 H 1.08998 * 110.48603 * 279.26009 * 6 5 3 37 37 H 1.09002 * 110.48350 * 156.62071 * 6 5 3 38 38 H 0.96999 * 119.99994 * 92.16211 * 9 7 6 39 39 H 0.96996 * 119.99915 * 355.66338 * 14 12 10 40 40 H 1.08003 * 120.03522 * 359.97438 * 16 15 14 41 41 H 1.08005 * 119.95827 * 180.27404 * 17 16 15 42 42 H 1.09006 * 109.47382 * 29.97436 * 19 18 17 43 43 H 1.08999 * 109.47049 * 149.97373 * 19 18 17 44 44 H 0.97007 * 119.99933 * 180.02562 * 23 22 20 45 45 H 1.07993 * 119.96355 * 180.02562 * 28 18 17 46 46 H 1.07997 * 120.03703 * 179.97438 * 29 28 18 47 47 H 1.09002 * 110.03287 * 119.28781 * 30 7 6 48 48 H 1.09000 * 110.02891 * 240.66786 * 30 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3371 2.0218 0.4710 5 6 2.3514 1.7470 -1.4449 6 6 3.4600 2.8062 -1.2258 7 6 4.2950 2.2439 -0.0569 8 1 5.1573 1.6990 -0.4412 9 7 4.7388 3.3355 0.8135 10 6 5.8922 3.9810 0.5502 11 8 6.5634 3.6577 -0.4078 12 6 6.3442 5.0942 1.4372 13 8 5.6732 5.4173 2.3956 14 7 7.5005 5.7360 1.1771 15 6 7.8788 6.8355 1.9518 16 6 8.5610 7.8963 1.3690 17 6 8.9288 8.9837 2.1365 18 6 8.6285 9.0128 3.4862 19 6 9.0361 10.1989 4.3217 20 6 10.4119 9.9639 4.8901 21 1 10.9383 9.0471 4.6688 22 6 10.9986 10.9193 5.6926 23 7 12.1991 10.7140 6.1890 24 14 10.0886 12.5052 6.0747 25 1 9.2775 12.3263 7.3058 26 1 11.0691 13.6009 6.2827 27 1 9.1953 12.8492 4.9393 28 6 7.9546 7.9562 4.0708 29 6 7.5786 6.8681 3.3079 30 6 3.3732 1.2896 0.7225 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 2.7298 0.9063 -2.0265 35 1 1.4808 2.1892 -1.9293 36 1 3.0218 3.7666 -0.9543 37 1 4.0747 2.9057 -2.1205 38 1 4.2025 3.5937 1.5794 39 1 8.0700 5.4346 0.4520 40 1 8.8001 7.8720 0.3160 41 1 9.4552 9.8107 1.6831 42 1 9.0479 11.0944 3.7001 43 1 8.3241 10.3314 5.1363 44 1 12.6117 11.3860 6.7540 45 1 7.7213 7.9822 5.1249 46 1 7.0527 6.0431 3.7652 47 1 3.7877 0.2815 0.7157 48 1 3.2567 1.6383 1.7486 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001120965226.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:25:02 Heat of formation + Delta-G solvation = -92.711508 kcal Electronic energy + Delta-G solvation = -28754.553373 eV Core-core repulsion = 24581.279137 eV Total energy + Delta-G solvation = -4173.274236 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.19893 -39.96177 -39.01348 -38.07960 -36.89079 -35.25344 -33.67857 -32.96748 -30.92250 -30.44903 -29.39083 -28.46869 -27.39022 -26.48867 -24.80572 -22.75474 -22.48051 -21.41304 -20.97512 -20.77146 -20.10049 -18.87569 -17.59388 -17.31054 -16.78765 -16.66937 -16.55265 -16.10278 -15.72738 -15.44346 -15.03746 -14.68038 -14.55945 -14.17067 -14.13364 -13.95304 -13.69918 -13.35010 -13.24901 -12.99799 -12.59791 -12.49682 -12.43477 -12.32242 -11.93554 -11.92307 -11.84473 -11.71165 -11.50276 -11.32035 -11.16055 -10.89948 -10.54457 -10.25638 -10.13853 -10.09062 -9.85062 -9.64824 -9.56138 -9.35619 -8.59896 -8.42349 -7.55451 -6.08821 -4.08278 1.02876 1.86782 1.93049 2.13395 2.98818 3.19269 3.27922 3.35845 3.37718 3.38376 3.92444 3.99268 4.18288 4.36422 4.40258 4.49862 4.67368 4.74288 4.77449 4.84073 4.89889 4.97591 5.00509 5.18687 5.22326 5.26056 5.32349 5.43426 5.44309 5.49331 5.60819 5.63742 5.74267 5.84014 5.90103 5.94225 6.04038 6.46776 6.51422 6.65835 6.67424 6.78636 6.90165 6.98558 7.00202 7.21063 7.45083 7.53373 7.55286 7.68231 7.81873 8.47619 8.96311 9.51305 11.04022 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.029430 B = 0.001597 C = 0.001562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.188684 B =17525.554340 C =17921.306962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.382 6.382 3 C 0.082 3.918 4 H 0.072 0.928 5 C -0.143 4.143 6 C -0.135 4.135 7 C 0.141 3.859 8 H 0.102 0.898 9 N -0.697 5.697 10 C 0.513 3.487 11 O -0.517 6.517 12 C 0.501 3.499 13 O -0.504 6.504 14 N -0.633 5.633 15 C 0.096 3.904 16 C -0.134 4.134 17 C -0.106 4.106 18 C -0.032 4.032 19 C 0.013 3.987 20 C -0.514 4.514 21 H 0.074 0.926 22 C 0.070 3.930 23 N -0.899 5.899 24 Si 0.878 3.122 25 H -0.276 1.276 26 H -0.287 1.287 27 H -0.265 1.265 28 C -0.107 4.107 29 C -0.113 4.113 30 C -0.130 4.130 31 H 0.042 0.958 32 H 0.042 0.958 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.071 0.929 36 H 0.075 0.925 37 H 0.079 0.921 38 H 0.413 0.587 39 H 0.418 0.582 40 H 0.119 0.881 41 H 0.126 0.874 42 H 0.029 0.971 43 H 0.025 0.975 44 H 0.264 0.736 45 H 0.124 0.876 46 H 0.130 0.870 47 H 0.092 0.908 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.606 -19.516 -15.478 33.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.301 6.301 3 C 0.024 3.976 4 H 0.090 0.910 5 C -0.181 4.181 6 C -0.173 4.173 7 C 0.037 3.963 8 H 0.120 0.880 9 N -0.351 5.351 10 C 0.294 3.706 11 O -0.392 6.392 12 C 0.283 3.717 13 O -0.378 6.378 14 N -0.279 5.279 15 C 0.004 3.996 16 C -0.154 4.154 17 C -0.124 4.124 18 C -0.033 4.033 19 C -0.024 4.024 20 C -0.552 4.552 21 H 0.092 0.908 22 C -0.132 4.132 23 N -0.538 5.538 24 Si 0.705 3.295 25 H -0.202 1.202 26 H -0.212 1.212 27 H -0.189 1.189 28 C -0.126 4.126 29 C -0.133 4.133 30 C -0.168 4.168 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.104 0.896 34 H 0.100 0.900 35 H 0.090 0.910 36 H 0.094 0.906 37 H 0.098 0.902 38 H 0.250 0.750 39 H 0.255 0.745 40 H 0.137 0.863 41 H 0.143 0.857 42 H 0.047 0.953 43 H 0.043 0.957 44 H 0.074 0.926 45 H 0.142 0.858 46 H 0.148 0.852 47 H 0.111 0.889 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -22.367 -19.642 -15.393 33.512 hybrid contribution -0.463 1.035 0.280 1.168 sum -22.831 -18.607 -15.113 33.104 Atomic orbital electron populations 1.22803 0.80883 1.02890 1.00059 1.87921 1.19805 1.27390 1.94934 1.23019 0.94359 0.84721 0.95503 0.91032 1.22962 0.98820 0.99200 0.97157 1.22752 0.97006 0.98853 0.98718 1.21692 0.97843 0.86788 0.89969 0.87989 1.45962 1.22879 1.34907 1.31302 1.20085 0.81985 0.83224 0.85323 1.90776 1.54488 1.65213 1.28725 1.20100 0.82040 0.83772 0.85818 1.90781 1.54573 1.64662 1.27819 1.43005 1.20889 1.29331 1.34707 1.17546 1.03247 0.88075 0.90694 1.20795 1.02061 0.93050 0.99460 1.20880 0.99949 0.97793 0.93811 1.20371 0.92422 0.96782 0.93686 1.18827 0.97595 0.91485 0.94459 1.20932 0.98824 1.05549 1.29902 0.90770 1.24994 0.94737 0.98194 0.95269 1.69902 1.14725 1.35322 1.33823 0.86808 0.79877 0.83526 0.79315 1.20157 1.21248 1.18916 1.20994 0.98613 0.93169 0.99796 1.21120 1.00969 0.99593 0.91602 1.22488 0.94054 1.00989 0.99307 0.93907 0.93974 0.89553 0.89988 0.90996 0.90623 0.90200 0.74959 0.74450 0.86296 0.85651 0.95302 0.95726 0.92586 0.85772 0.85172 0.88918 0.90017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 10.85 101.05 1.10 1.23 16 2 O -0.38 -2.67 10.41 -35.23 -0.37 -3.04 16 3 C 0.08 0.46 3.35 -25.07 -0.08 0.38 16 4 H 0.07 0.34 7.82 -51.93 -0.41 -0.07 16 5 C -0.14 -0.76 6.62 -24.74 -0.16 -0.93 16 6 C -0.13 -0.84 6.53 -25.07 -0.16 -1.00 16 7 C 0.14 0.96 3.25 -66.81 -0.22 0.74 16 8 H 0.10 0.80 7.56 -51.93 -0.39 0.41 16 9 N -0.70 -5.64 5.03 -53.19 -0.27 -5.91 16 10 C 0.51 5.58 7.88 -11.64 -0.09 5.49 16 11 O -0.52 -6.48 16.14 5.49 0.09 -6.40 16 12 C 0.50 6.41 7.73 -11.63 -0.09 6.32 16 13 O -0.50 -7.40 13.91 5.48 0.08 -7.33 16 14 N -0.63 -8.24 5.32 -10.30 -0.05 -8.30 16 15 C 0.10 1.53 6.30 -83.74 -0.53 1.00 16 16 C -0.13 -2.10 9.97 -39.38 -0.39 -2.49 16 17 C -0.11 -1.93 9.69 -39.61 -0.38 -2.32 16 18 C -0.03 -0.66 5.07 -104.58 -0.53 -1.20 16 19 C 0.01 0.32 4.17 -29.03 -0.12 0.20 16 20 C -0.51 -14.42 9.65 -34.44 -0.33 -14.75 16 21 H 0.07 2.28 7.98 -52.48 -0.42 1.86 16 22 C 0.07 1.99 5.47 -17.82 -0.10 1.90 16 23 N -0.90 -27.35 13.96 55.43 0.77 -26.58 16 24 Si 0.88 21.18 27.47 -169.99 -4.67 16.51 16 25 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 26 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 27 H -0.26 -6.10 6.54 56.52 0.37 -5.73 16 28 C -0.11 -2.06 9.69 -39.61 -0.38 -2.44 16 29 C -0.11 -1.97 8.70 -39.37 -0.34 -2.31 16 30 C -0.13 -0.73 6.33 -25.61 -0.16 -0.90 16 31 H 0.04 0.16 8.11 -51.93 -0.42 -0.26 16 32 H 0.04 0.15 8.14 -51.93 -0.42 -0.27 16 33 H 0.09 0.30 8.14 -51.93 -0.42 -0.13 16 34 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.08 0.48 8.05 -51.93 -0.42 0.06 16 37 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.41 2.92 7.79 -40.82 -0.32 2.60 16 39 H 0.42 4.59 8.30 -40.82 -0.34 4.25 16 40 H 0.12 1.51 8.06 -52.48 -0.42 1.08 16 41 H 0.13 2.16 8.06 -52.48 -0.42 1.74 16 42 H 0.03 0.67 7.14 -51.93 -0.37 0.30 16 43 H 0.02 0.57 7.51 -51.93 -0.39 0.18 16 44 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 45 H 0.12 2.29 8.06 -52.49 -0.42 1.87 16 46 H 0.13 2.19 6.22 -52.49 -0.33 1.87 16 47 H 0.09 0.55 8.07 -51.93 -0.42 0.13 16 48 H 0.08 0.40 7.62 -51.93 -0.40 0.01 16 LS Contribution 399.58 15.07 6.02 6.02 Total: -1.00 -33.01 399.58 -8.55 -41.56 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -7.16 Total: 4.53 kcal Atomic # 6 Polarization: -8.08 SS G_CDS: -2.99 Total: -11.07 kcal Atomic # 7 Polarization: -41.24 SS G_CDS: 0.45 Total: -40.78 kcal Atomic # 8 Polarization: -16.56 SS G_CDS: -0.20 Total: -16.76 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -4.67 Total: 16.51 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -33.01 -8.55 -41.56 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120965226.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.153 kcal (2) G-P(sol) polarization free energy of solvation -33.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds