Wall clock time and date at job start Wed Apr 1 2020 03:25:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42901 * 114.00049 * 2 1 4 4 H 1.09000 * 110.43610 * 27.45917 * 3 2 1 5 5 C 1.54887 * 110.48537 * 264.77900 * 3 2 1 6 6 C 1.54894 * 102.74564 * 203.37886 * 5 3 2 7 7 C 1.54266 * 104.19827 * 37.94400 * 6 5 3 8 8 H 1.08995 * 110.07640 * 95.69386 * 7 6 5 9 9 N 1.46500 * 110.03113 * 217.10522 * 7 6 5 10 10 C 1.34773 * 120.00319 * 272.16417 * 9 7 6 11 11 O 1.21361 * 119.99640 * 359.97438 * 10 9 7 12 12 C 1.49343 * 120.00236 * 179.97438 * 10 9 7 13 13 O 1.21371 * 120.00118 * 0.02562 * 12 10 9 14 14 N 1.34781 * 119.99831 * 179.72022 * 12 10 9 15 15 C 1.39725 * 119.99831 * 175.65791 * 14 12 10 16 16 C 1.38936 * 120.07703 * 214.82667 * 15 14 12 17 17 C 1.38091 * 119.92151 * 179.74782 * 16 15 14 18 18 C 1.38296 * 120.08030 * 0.52875 * 17 16 15 19 19 C 1.50697 * 119.92576 * 179.76789 * 18 17 16 20 20 C 1.50703 * 109.47059 * 269.97751 * 19 18 17 21 21 H 1.08008 * 119.99788 * 359.97438 * 20 19 18 22 22 C 1.37871 * 120.00058 * 179.97438 * 20 19 18 23 23 N 1.31517 * 120.00068 * 179.97438 * 22 20 19 24 24 Si 1.86802 * 120.00154 * 359.97438 * 22 20 19 25 25 H 1.48504 * 109.47211 * 89.99549 * 24 22 20 26 26 H 1.48500 * 109.47533 * 209.99968 * 24 22 20 27 27 H 1.48498 * 109.46981 * 330.00418 * 24 22 20 28 28 C 1.38290 * 120.15034 * 359.74292 * 18 17 16 29 29 C 1.38100 * 120.07651 * 359.97438 * 28 18 17 30 30 C 1.53877 * 106.59451 * 336.38983 * 7 6 5 31 31 H 1.09003 * 109.47028 * 299.99694 * 1 2 3 32 32 H 1.08998 * 109.47318 * 59.99588 * 1 2 3 33 33 H 1.09002 * 109.46979 * 180.02562 * 1 2 3 34 34 H 1.09000 * 110.75613 * 321.69004 * 5 3 2 35 35 H 1.08999 * 110.75633 * 84.87929 * 5 3 2 36 36 H 1.08998 * 110.48603 * 279.26009 * 6 5 3 37 37 H 1.09002 * 110.48350 * 156.62071 * 6 5 3 38 38 H 0.96999 * 119.99994 * 92.16211 * 9 7 6 39 39 H 0.96996 * 119.99915 * 355.66338 * 14 12 10 40 40 H 1.08003 * 120.03522 * 359.97438 * 16 15 14 41 41 H 1.08005 * 119.95827 * 180.27404 * 17 16 15 42 42 H 1.09006 * 109.47382 * 29.97436 * 19 18 17 43 43 H 1.08999 * 109.47049 * 149.97373 * 19 18 17 44 44 H 0.97007 * 119.99933 * 180.02562 * 23 22 20 45 45 H 1.07993 * 119.96355 * 180.02562 * 28 18 17 46 46 H 1.07997 * 120.03703 * 179.97438 * 29 28 18 47 47 H 1.09002 * 110.03287 * 119.28781 * 30 7 6 48 48 H 1.09000 * 110.02891 * 240.66786 * 30 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3371 2.0218 0.4710 5 6 2.3514 1.7470 -1.4449 6 6 3.4600 2.8062 -1.2258 7 6 4.2950 2.2439 -0.0569 8 1 5.1573 1.6990 -0.4412 9 7 4.7388 3.3355 0.8135 10 6 5.8922 3.9810 0.5502 11 8 6.5634 3.6577 -0.4078 12 6 6.3442 5.0942 1.4372 13 8 5.6732 5.4173 2.3956 14 7 7.5005 5.7360 1.1771 15 6 7.8788 6.8355 1.9518 16 6 8.5610 7.8963 1.3690 17 6 8.9288 8.9837 2.1365 18 6 8.6285 9.0128 3.4862 19 6 9.0361 10.1989 4.3217 20 6 10.4119 9.9639 4.8901 21 1 10.9383 9.0471 4.6688 22 6 10.9986 10.9193 5.6926 23 7 12.1991 10.7140 6.1890 24 14 10.0886 12.5052 6.0747 25 1 9.2775 12.3263 7.3058 26 1 11.0691 13.6009 6.2827 27 1 9.1953 12.8492 4.9393 28 6 7.9546 7.9562 4.0708 29 6 7.5786 6.8681 3.3079 30 6 3.3732 1.2896 0.7225 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 2.7298 0.9063 -2.0265 35 1 1.4808 2.1892 -1.9293 36 1 3.0218 3.7666 -0.9543 37 1 4.0747 2.9057 -2.1205 38 1 4.2025 3.5937 1.5794 39 1 8.0700 5.4346 0.4520 40 1 8.8001 7.8720 0.3160 41 1 9.4552 9.8107 1.6831 42 1 9.0479 11.0944 3.7001 43 1 8.3241 10.3314 5.1363 44 1 12.6117 11.3860 6.7540 45 1 7.7213 7.9822 5.1249 46 1 7.0527 6.0431 3.7652 47 1 3.7877 0.2815 0.7157 48 1 3.2567 1.6383 1.7486 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001120965226.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:25:01 Heat of formation + Delta-G solvation = -114.992523 kcal Electronic energy + Delta-G solvation = -28755.519550 eV Core-core repulsion = 24581.279137 eV Total energy + Delta-G solvation = -4174.240414 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.18698 -40.82830 -39.83673 -39.20310 -37.49529 -36.49590 -34.98228 -34.33508 -32.63729 -31.83311 -29.85986 -29.37469 -28.64153 -26.95312 -25.95847 -24.28495 -23.87831 -22.15547 -21.80835 -21.52668 -21.34450 -19.84987 -18.95213 -18.50434 -18.06628 -17.49020 -17.20791 -17.10264 -16.66683 -16.41285 -15.97444 -15.89405 -15.82650 -15.40564 -14.99712 -14.88200 -14.62294 -14.40158 -14.34085 -14.31388 -13.92804 -13.75293 -13.52299 -13.28553 -13.11946 -12.93117 -12.72087 -12.48557 -12.36246 -12.26542 -12.24310 -11.85655 -11.84867 -11.78071 -11.59117 -11.57510 -11.15789 -10.77615 -10.73972 -10.54131 -10.31388 -9.80689 -8.96592 -8.28350 -6.33538 -0.02709 0.53266 0.61967 1.16707 1.38572 1.39808 1.51794 2.01132 2.36824 2.48090 2.79900 2.91501 3.06233 3.26099 3.47682 3.52740 4.00949 4.05957 4.10068 4.22102 4.28777 4.29032 4.31049 4.44043 4.50832 4.51901 4.56573 4.58786 4.59940 4.61604 4.79246 4.91000 4.93886 5.02063 5.03354 5.07308 5.12278 5.17117 5.22256 5.27762 5.32700 5.34051 5.52037 5.58355 5.84123 5.98138 6.09754 6.24151 6.28874 6.29333 6.63579 6.72932 6.81726 7.30091 8.88045 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.029430 B = 0.001597 C = 0.001562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.188684 B =17525.554340 C =17921.306962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.403 6.403 3 C 0.081 3.919 4 H 0.083 0.917 5 C -0.137 4.137 6 C -0.131 4.131 7 C 0.141 3.859 8 H 0.093 0.907 9 N -0.681 5.681 10 C 0.520 3.480 11 O -0.534 6.534 12 C 0.504 3.496 13 O -0.522 6.522 14 N -0.628 5.628 15 C 0.108 3.892 16 C -0.124 4.124 17 C -0.112 4.112 18 C -0.067 4.067 19 C 0.020 3.980 20 C -0.520 4.520 21 H 0.029 0.971 22 C 0.009 3.991 23 N -0.949 5.949 24 Si 0.950 3.050 25 H -0.267 1.267 26 H -0.283 1.283 27 H -0.244 1.244 28 C -0.118 4.118 29 C -0.120 4.120 30 C -0.126 4.126 31 H 0.050 0.950 32 H 0.050 0.950 33 H 0.093 0.907 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.073 0.927 38 H 0.420 0.580 39 H 0.430 0.570 40 H 0.156 0.844 41 H 0.133 0.867 42 H 0.035 0.965 43 H 0.029 0.971 44 H 0.267 0.733 45 H 0.121 0.879 46 H 0.135 0.865 47 H 0.089 0.911 48 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.991 -19.609 -16.930 35.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.323 6.323 3 C 0.023 3.977 4 H 0.101 0.899 5 C -0.176 4.176 6 C -0.169 4.169 7 C 0.037 3.963 8 H 0.111 0.889 9 N -0.334 5.334 10 C 0.300 3.700 11 O -0.411 6.411 12 C 0.286 3.714 13 O -0.397 6.397 14 N -0.275 5.275 15 C 0.015 3.985 16 C -0.144 4.144 17 C -0.131 4.131 18 C -0.068 4.068 19 C -0.017 4.017 20 C -0.558 4.558 21 H 0.047 0.953 22 C -0.188 4.188 23 N -0.590 5.590 24 Si 0.773 3.227 25 H -0.192 1.192 26 H -0.209 1.209 27 H -0.167 1.167 28 C -0.137 4.137 29 C -0.140 4.140 30 C -0.164 4.164 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.111 0.889 34 H 0.095 0.905 35 H 0.100 0.900 36 H 0.096 0.904 37 H 0.091 0.909 38 H 0.259 0.741 39 H 0.270 0.730 40 H 0.174 0.826 41 H 0.151 0.849 42 H 0.054 0.946 43 H 0.047 0.953 44 H 0.076 0.924 45 H 0.139 0.861 46 H 0.153 0.847 47 H 0.107 0.893 48 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -24.792 -19.772 -16.867 35.917 hybrid contribution 0.246 0.870 0.668 1.124 sum -24.546 -18.902 -16.199 34.959 Atomic orbital electron populations 1.22954 0.79719 1.03691 1.00814 1.87890 1.21203 1.28105 1.95054 1.23074 0.94381 0.84652 0.95593 0.89882 1.22916 0.98788 0.98694 0.97153 1.22698 0.97030 0.99193 0.98004 1.21782 0.97855 0.86430 0.90198 0.88930 1.45970 1.21789 1.34352 1.31335 1.19689 0.82612 0.82903 0.84781 1.90781 1.55237 1.65737 1.29353 1.20461 0.81568 0.83784 0.85606 1.90777 1.55065 1.65203 1.28684 1.42958 1.21330 1.28586 1.34665 1.17632 1.01788 0.88718 0.90376 1.21079 1.00666 0.91685 1.00965 1.21033 0.99863 0.99025 0.93132 1.20253 0.95080 0.96694 0.94758 1.18668 0.94878 0.93221 0.94949 1.21177 1.00810 1.03840 1.29976 0.95287 1.25967 0.95533 1.02319 0.95024 1.70063 1.16805 1.36977 1.35127 0.85663 0.78765 0.78360 0.79930 1.19222 1.20884 1.16703 1.21017 0.99045 0.93616 0.99979 1.21178 1.01221 0.99161 0.92410 1.22443 0.93908 1.00376 0.99637 0.93167 0.93176 0.88860 0.90507 0.89951 0.90410 0.90859 0.74147 0.73028 0.82592 0.84944 0.94629 0.95303 0.92399 0.86113 0.84735 0.89265 0.89116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 10.85 113.37 1.23 1.40 16 2 O -0.40 -5.03 10.41 -148.98 -1.55 -6.58 16 3 C 0.08 0.76 3.35 31.67 0.11 0.87 16 4 H 0.08 0.59 7.82 -2.39 -0.02 0.57 16 5 C -0.14 -1.22 6.62 31.89 0.21 -1.01 16 6 C -0.13 -1.41 6.53 31.67 0.21 -1.20 16 7 C 0.14 1.70 3.25 45.72 0.15 1.85 16 8 H 0.09 1.35 7.56 -2.39 -0.02 1.33 16 9 N -0.68 -9.82 5.03 -440.54 -2.22 -12.03 16 10 C 0.52 10.41 7.88 87.24 0.69 11.10 16 11 O -0.53 -12.52 16.14 -3.28 -0.05 -12.57 16 12 C 0.50 11.99 7.73 87.24 0.67 12.66 16 13 O -0.52 -14.52 13.91 -3.31 -0.05 -14.57 16 14 N -0.63 -15.04 5.32 -304.84 -1.62 -16.66 16 15 C 0.11 3.24 6.30 38.22 0.24 3.48 16 16 C -0.12 -3.63 9.97 22.40 0.22 -3.41 16 17 C -0.11 -3.99 9.69 22.25 0.22 -3.78 16 18 C -0.07 -2.80 5.07 -19.84 -0.10 -2.90 16 19 C 0.02 0.95 4.17 29.10 0.12 1.07 16 20 C -0.52 -30.05 9.65 25.60 0.25 -29.80 16 21 H 0.03 1.87 7.98 -2.91 -0.02 1.85 16 22 C 0.01 0.50 5.47 84.65 0.46 0.96 16 23 N -0.95 -59.46 13.96 21.45 0.30 -59.16 16 24 Si 0.95 43.65 27.47 68.60 1.88 45.53 16 25 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 26 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 27 H -0.24 -10.29 6.54 99.48 0.65 -9.64 16 28 C -0.12 -4.57 9.69 22.25 0.22 -4.35 16 29 C -0.12 -4.10 8.70 22.40 0.19 -3.91 16 30 C -0.13 -1.21 6.33 31.32 0.20 -1.01 16 31 H 0.05 0.28 8.11 -2.39 -0.02 0.26 16 32 H 0.05 0.27 8.14 -2.39 -0.02 0.25 16 33 H 0.09 0.50 8.14 -2.39 -0.02 0.49 16 34 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 36 H 0.08 0.82 8.05 -2.39 -0.02 0.80 16 37 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.42 5.08 7.79 -92.71 -0.72 4.36 16 39 H 0.43 8.39 8.30 -92.71 -0.77 7.62 16 40 H 0.16 3.37 8.06 -2.91 -0.02 3.35 16 41 H 0.13 4.43 8.06 -2.91 -0.02 4.41 16 42 H 0.04 1.61 7.14 -2.38 -0.02 1.59 16 43 H 0.03 1.32 7.51 -2.39 -0.02 1.30 16 44 H 0.27 15.56 8.31 -92.70 -0.77 14.79 16 45 H 0.12 4.59 8.06 -2.91 -0.02 4.57 16 46 H 0.13 4.45 6.22 -2.91 -0.02 4.43 16 47 H 0.09 0.95 8.07 -2.39 -0.02 0.93 16 48 H 0.09 0.71 7.62 -2.39 -0.02 0.69 16 Total: -1.00 -72.48 399.58 1.43 -71.06 By element: Atomic # 1 Polarization: 23.52 SS G_CDS: -0.55 Total: 22.97 kcal Atomic # 6 Polarization: -23.26 SS G_CDS: 5.28 Total: -17.97 kcal Atomic # 7 Polarization: -84.32 SS G_CDS: -3.54 Total: -87.86 kcal Atomic # 8 Polarization: -32.08 SS G_CDS: -1.65 Total: -33.73 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 1.88 Total: 45.53 kcal Total: -72.48 1.43 -71.06 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120965226.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.936 kcal (2) G-P(sol) polarization free energy of solvation -72.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds