Wall clock time and date at job start Wed Apr 1 2020 04:19:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86800 * 119.99804 * 2 1 4 4 H 1.48503 * 109.47073 * 269.99615 * 3 2 1 5 5 H 1.48495 * 109.47200 * 29.99879 * 3 2 1 6 6 H 1.48498 * 109.47092 * 149.99993 * 3 2 1 7 7 C 1.38811 * 120.00398 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99808 * 0.02562 * 7 2 1 9 9 N 1.36937 * 120.00253 * 180.02562 * 7 2 1 10 10 C 1.46500 * 119.99784 * 180.02562 * 9 7 2 11 11 C 1.53007 * 109.47031 * 180.02562 * 10 9 7 12 12 H 1.08989 * 109.46878 * 295.00216 * 11 10 9 13 13 N 1.46505 * 109.46805 * 54.99909 * 11 10 9 14 14 C 1.34777 * 119.99553 * 205.00234 * 13 11 10 15 15 O 1.21552 * 120.00298 * 0.02562 * 14 13 11 16 16 C 1.47845 * 120.00012 * 179.97438 * 14 13 11 17 17 C 1.39571 * 120.14594 * 179.97438 * 16 14 13 18 18 C 1.37956 * 119.85308 * 180.02562 * 17 16 14 19 19 C 1.38361 * 120.14496 * 0.02562 * 18 17 16 20 20 C 1.50706 * 119.85111 * 179.97438 * 19 18 17 21 21 N 1.46505 * 109.47014 * 90.00243 * 20 19 18 22 22 C 1.34770 * 119.99664 * 179.97438 * 21 20 19 23 23 N 1.34781 * 119.99516 * 180.02562 * 22 21 20 24 24 O 1.21586 * 120.00557 * 0.02562 * 22 21 20 25 25 C 1.38356 * 120.29417 * 0.23278 * 19 18 17 26 26 C 1.37960 * 120.14290 * 359.48864 * 25 19 18 27 27 C 1.52994 * 109.47330 * 174.99754 * 11 10 9 28 28 C 1.52997 * 117.49881 * 248.74838 * 27 11 10 29 29 C 1.52998 * 117.49834 * 180.08623 * 27 11 10 30 30 H 0.96999 * 120.00626 * 359.97438 * 1 2 3 31 31 H 0.96997 * 119.99796 * 359.97438 * 9 7 2 32 32 H 1.08995 * 109.47656 * 59.99843 * 10 9 7 33 33 H 1.09008 * 109.46992 * 299.99450 * 10 9 7 34 34 H 0.96997 * 120.00523 * 24.99694 * 13 11 10 35 35 H 1.08003 * 120.07690 * 0.02562 * 17 16 14 36 36 H 1.08001 * 119.92660 * 180.02562 * 18 17 16 37 37 H 1.09000 * 109.46646 * 209.99569 * 20 19 18 38 38 H 1.09000 * 109.47248 * 330.00286 * 20 19 18 39 39 H 0.97000 * 120.00105 * 359.97438 * 21 20 19 40 40 H 0.97000 * 120.00253 * 359.97438 * 23 22 21 41 41 H 0.97008 * 119.99749 * 180.02562 * 23 22 21 42 42 H 1.07994 * 119.92715 * 179.74290 * 25 19 18 43 43 H 1.07998 * 120.07313 * 180.24959 * 26 25 19 44 44 H 1.09002 * 115.55072 * 34.41585 * 27 11 10 45 45 H 1.08997 * 117.50031 * 359.97438 * 28 27 11 46 46 H 1.09009 * 117.49963 * 145.02226 * 28 27 11 47 47 H 1.08997 * 117.49698 * 214.97598 * 29 27 11 48 48 H 1.08999 * 117.49917 * 0.02562 * 29 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5476 1.4402 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0005 9 7 3.3797 -1.2021 0.0011 10 6 4.1122 -2.4708 0.0011 11 6 5.6165 -2.1912 0.0024 12 1 5.8950 -1.6974 -0.9285 13 7 5.9509 -1.3235 1.1345 14 6 7.0488 -0.5435 1.0843 15 8 7.7613 -0.5595 0.0996 16 6 7.3860 0.3326 2.2265 17 6 8.5226 1.1412 2.1779 18 6 8.8319 1.9560 3.2474 19 6 8.0185 1.9723 4.3665 20 6 8.3629 2.8644 5.5313 21 7 7.7263 4.1715 5.3502 22 6 7.8953 5.1372 6.2750 23 7 7.3093 6.3394 6.1086 24 8 8.5765 4.9239 7.2593 25 6 6.8933 1.1692 4.4233 26 6 6.5695 0.3540 3.3584 27 6 6.3804 -3.5108 0.1281 28 6 7.1381 -3.7669 1.4324 29 6 7.9087 -3.4430 0.1500 30 1 -0.4851 0.8400 0.0004 31 1 3.8646 -0.3620 0.0007 32 1 3.8492 -3.0422 -0.8891 33 1 3.8485 -3.0425 0.8909 34 1 5.3821 -1.3104 1.9201 35 1 9.1586 1.1292 1.3051 36 1 9.7108 2.5825 3.2109 37 1 8.0042 2.4105 6.4551 38 1 9.4442 2.9912 5.5846 39 1 7.1832 4.3418 4.5647 40 1 6.7662 6.5097 5.3231 41 1 7.4312 7.0347 6.7740 42 1 6.2649 1.1835 5.3014 43 1 5.6887 -0.2694 3.4022 44 1 5.9216 -4.3684 -0.3641 45 1 7.0927 -2.9951 2.2007 46 1 7.1783 -4.7930 1.7981 47 1 8.4554 -4.2561 -0.3274 48 1 8.3699 -2.4582 0.0752 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323110607.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:29 Heat of formation + Delta-G solvation = 2.698968 kcal Electronic energy + Delta-G solvation = -29956.270446 eV Core-core repulsion = 25819.426269 eV Total energy + Delta-G solvation = -4136.844176 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.179 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.68155 -40.13777 -39.04180 -37.19245 -35.21160 -35.11615 -33.99650 -33.54987 -31.83070 -31.32494 -31.05000 -28.72931 -26.70301 -24.12174 -22.99121 -22.89037 -22.30111 -21.49127 -21.37468 -20.71251 -19.82748 -18.73931 -18.29904 -17.78881 -17.45592 -16.43939 -16.14588 -15.75871 -15.51187 -15.23690 -15.15353 -14.91044 -14.65811 -14.45585 -14.20397 -13.89274 -13.83917 -13.46443 -13.39154 -13.01404 -12.84008 -12.64328 -12.26093 -11.95084 -11.86732 -11.59709 -11.38994 -11.33264 -11.10615 -10.94889 -10.71563 -10.30568 -10.26155 -10.07068 -9.86905 -9.76912 -9.65230 -9.41923 -9.27580 -9.19613 -9.01782 -8.85574 -7.34597 -5.85396 -3.22001 0.48428 1.08707 2.46109 2.87217 2.89344 3.17302 3.28084 3.33541 3.37893 3.66479 3.95281 4.17009 4.22184 4.46365 4.50473 4.60502 4.69413 4.77130 4.94519 5.05052 5.07317 5.09759 5.26731 5.34695 5.36283 5.43387 5.49676 5.57676 5.70387 5.73035 5.78206 5.81652 5.96984 6.02148 6.03517 6.10052 6.17409 6.17556 6.32017 6.32954 6.41141 6.51858 6.54928 6.55421 6.72630 7.57336 7.57973 7.89678 8.23775 8.26257 8.33077 9.11397 9.83480 10.02664 11.32698 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.008339 B = 0.003221 C = 0.002472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3357.015061 B = 8692.108324 C =11325.023581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.007 3.993 3 Si 0.883 3.117 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.278 1.278 7 C -0.246 4.246 8 H 0.092 0.908 9 N -0.755 5.755 10 C 0.152 3.848 11 C 0.164 3.836 12 H 0.093 0.907 13 N -0.706 5.706 14 C 0.555 3.445 15 O -0.536 6.536 16 C -0.121 4.121 17 C -0.063 4.063 18 C -0.109 4.109 19 C -0.092 4.092 20 C 0.179 3.821 21 N -0.741 5.741 22 C 0.706 3.294 23 N -0.868 5.868 24 O -0.597 6.597 25 C -0.105 4.105 26 C -0.085 4.085 27 C -0.160 4.160 28 C -0.177 4.177 29 C -0.186 4.186 30 H 0.260 0.740 31 H 0.362 0.638 32 H 0.045 0.955 33 H 0.035 0.965 34 H 0.404 0.596 35 H 0.138 0.862 36 H 0.130 0.870 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.400 0.600 40 H 0.398 0.602 41 H 0.415 0.585 42 H 0.132 0.868 43 H 0.132 0.868 44 H 0.112 0.888 45 H 0.090 0.910 46 H 0.088 0.912 47 H 0.085 0.915 48 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.105 4.308 9.390 20.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.189 4.189 3 Si 0.713 3.287 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.376 4.376 8 H 0.109 0.891 9 N -0.401 5.401 10 C 0.024 3.976 11 C 0.059 3.941 12 H 0.111 0.889 13 N -0.357 5.357 14 C 0.343 3.657 15 O -0.415 6.415 16 C -0.124 4.124 17 C -0.081 4.081 18 C -0.127 4.127 19 C -0.093 4.093 20 C 0.055 3.945 21 N -0.398 5.398 22 C 0.404 3.596 23 N -0.436 5.436 24 O -0.475 6.475 25 C -0.123 4.123 26 C -0.104 4.104 27 C -0.180 4.180 28 C -0.214 4.214 29 C -0.223 4.223 30 H 0.070 0.930 31 H 0.195 0.805 32 H 0.063 0.937 33 H 0.053 0.947 34 H 0.241 0.759 35 H 0.156 0.844 36 H 0.148 0.852 37 H 0.097 0.903 38 H 0.096 0.904 39 H 0.234 0.766 40 H 0.226 0.774 41 H 0.247 0.753 42 H 0.150 0.850 43 H 0.150 0.850 44 H 0.130 0.870 45 H 0.109 0.891 46 H 0.107 0.893 47 H 0.104 0.896 48 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 18.954 3.837 9.467 21.532 hybrid contribution -0.418 1.615 -0.177 1.677 sum 18.537 5.452 9.289 21.439 Atomic orbital electron populations 1.69692 1.05067 1.25877 1.57262 1.24657 0.95187 0.97117 1.01906 0.86583 0.79021 0.85134 0.77960 1.21060 1.21718 1.20448 1.19037 0.80434 0.94781 1.43356 0.89068 1.42698 1.04111 1.02055 1.91284 1.20908 0.86838 0.89872 0.99947 1.20864 0.95268 0.88263 0.89657 0.88890 1.46001 1.26315 1.42375 1.21052 1.18250 0.81084 0.79663 0.86729 1.90697 1.50552 1.67069 1.33161 1.20117 0.97449 0.99818 0.95002 1.21278 0.95206 0.93180 0.98486 1.21058 0.99838 0.99137 0.92703 1.20030 0.95826 0.97871 0.95531 1.20074 0.98200 0.80545 0.95677 1.45156 1.56089 1.13106 1.25466 1.15950 0.80078 0.80642 0.82919 1.43000 1.56931 1.14421 1.29234 1.90978 1.44538 1.81291 1.30698 1.21050 0.96441 0.95944 0.98898 1.21435 0.98483 0.97990 0.92446 1.22662 0.94052 0.99057 1.02226 1.22895 1.05086 1.01856 0.91551 1.23336 0.93929 1.04268 1.00788 0.92983 0.80471 0.93745 0.94681 0.75908 0.84388 0.85170 0.90346 0.90401 0.76584 0.77399 0.75313 0.85032 0.85006 0.86965 0.89113 0.89338 0.89608 0.86664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.47 13.97 55.49 0.78 -27.69 16 2 C 0.01 0.21 5.50 -17.43 -0.10 0.11 16 3 Si 0.88 21.51 27.74 -169.99 -4.71 16.79 16 4 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.28 -6.32 6.52 56.52 0.37 -5.95 16 7 C -0.25 -6.67 10.47 -15.06 -0.16 -6.83 16 8 H 0.09 2.64 8.06 -52.49 -0.42 2.22 16 9 N -0.76 -16.86 5.24 -59.90 -0.31 -17.17 16 10 C 0.15 2.69 5.80 -4.04 -0.02 2.67 16 11 C 0.16 2.49 2.59 -67.93 -0.18 2.31 16 12 H 0.09 1.59 7.58 -51.93 -0.39 1.19 16 13 N -0.71 -10.05 3.01 -54.75 -0.16 -10.21 16 14 C 0.56 8.12 6.61 -12.33 -0.08 8.04 16 15 O -0.54 -9.08 13.38 5.32 0.07 -9.01 16 16 C -0.12 -1.48 5.87 -104.97 -0.62 -2.10 16 17 C -0.06 -0.68 9.60 -39.19 -0.38 -1.06 16 18 C -0.11 -0.94 9.68 -39.64 -0.38 -1.33 16 19 C -0.09 -0.77 5.25 -104.53 -0.55 -1.32 16 20 C 0.18 1.44 5.79 -5.19 -0.03 1.41 16 21 N -0.74 -5.75 5.55 -66.41 -0.37 -6.12 16 22 C 0.71 6.84 8.84 -86.92 -0.77 6.07 16 23 N -0.87 -5.02 8.88 27.63 0.25 -4.77 16 24 O -0.60 -8.45 17.18 5.29 0.09 -8.36 16 25 C -0.10 -0.95 9.68 -39.64 -0.38 -1.33 16 26 C -0.08 -0.91 9.54 -39.18 -0.37 -1.28 16 27 C -0.16 -2.08 5.70 -90.63 -0.52 -2.59 16 28 C -0.18 -2.09 9.74 -26.69 -0.26 -2.35 16 29 C -0.19 -2.38 9.83 -26.69 -0.26 -2.65 16 30 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 31 H 0.36 8.09 5.20 -40.82 -0.21 7.88 16 32 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.04 0.61 8.14 -51.92 -0.42 0.19 16 34 H 0.40 5.39 6.64 -40.82 -0.27 5.12 16 35 H 0.14 1.50 7.65 -52.48 -0.40 1.09 16 36 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 37 H 0.08 0.66 8.08 -51.93 -0.42 0.24 16 38 H 0.08 0.64 8.08 -51.93 -0.42 0.22 16 39 H 0.40 2.44 8.48 -40.82 -0.35 2.09 16 40 H 0.40 1.27 8.84 -40.82 -0.36 0.90 16 41 H 0.41 2.01 8.93 -40.82 -0.36 1.65 16 42 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 43 H 0.13 1.31 6.41 -52.49 -0.34 0.98 16 44 H 0.11 1.34 8.11 -51.93 -0.42 0.92 16 45 H 0.09 1.09 6.67 -51.93 -0.35 0.74 16 46 H 0.09 0.93 8.14 -51.92 -0.42 0.51 16 47 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 48 H 0.12 1.71 5.01 -51.93 -0.26 1.45 16 LS Contribution 396.89 15.07 5.98 5.98 Total: -1.00 -35.36 396.89 -10.13 -45.49 By element: Atomic # 1 Polarization: 23.96 SS G_CDS: -6.68 Total: 17.28 kcal Atomic # 6 Polarization: 2.85 SS G_CDS: -5.06 Total: -2.21 kcal Atomic # 7 Polarization: -66.15 SS G_CDS: 0.17 Total: -65.98 kcal Atomic # 8 Polarization: -17.53 SS G_CDS: 0.16 Total: -17.36 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.71 Total: 16.79 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -35.36 -10.13 -45.49 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323110607.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.193 kcal (2) G-P(sol) polarization free energy of solvation -35.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds