Wall clock time and date at job start Wed Apr 1 2020 03:53:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86794 * 119.99868 * 2 1 4 4 H 1.48505 * 109.46931 * 269.99834 * 3 2 1 5 5 H 1.48495 * 109.47458 * 29.99619 * 3 2 1 6 6 H 1.48503 * 109.47251 * 149.99913 * 3 2 1 7 7 C 1.38812 * 119.99836 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00272 * 0.02562 * 7 2 1 9 9 N 1.36939 * 119.99639 * 180.02562 * 7 2 1 10 10 C 1.46508 * 119.99528 * 180.02562 * 9 7 2 11 11 H 1.09001 * 109.47213 * 35.00171 * 10 9 7 12 12 C 1.53000 * 109.47047 * 274.99856 * 10 9 7 13 13 C 1.52997 * 109.46977 * 180.02562 * 12 10 9 14 14 C 1.53005 * 109.47302 * 60.00009 * 13 12 10 15 15 C 1.53000 * 109.46939 * 300.00277 * 14 13 12 16 16 C 1.52997 * 109.47350 * 59.99752 * 15 14 13 17 17 H 1.09001 * 109.46979 * 59.99905 * 16 15 14 18 18 N 1.46504 * 109.46930 * 180.02562 * 16 15 14 19 19 C 1.34777 * 119.99854 * 274.99613 * 18 16 15 20 20 O 1.21593 * 119.99953 * 0.02562 * 19 18 16 21 21 C 1.47537 * 120.00133 * 180.27865 * 19 18 16 22 22 C 1.39802 * 120.97627 * 359.44411 * 21 19 18 23 23 N 1.32197 * 118.98028 * 179.71679 * 22 21 19 24 24 C 1.31940 * 121.13553 * 0.57748 * 23 22 21 25 25 C 1.50697 * 118.90261 * 179.67852 * 24 23 22 26 26 C 1.53004 * 117.49668 * 8.76533 * 25 24 23 27 27 C 1.52998 * 117.50010 * 300.10914 * 25 24 23 28 28 N 1.31728 * 122.19428 * 359.69619 * 24 23 22 29 29 C 1.32768 * 120.87888 * 0.02562 * 28 24 23 30 30 O 1.35275 * 120.61806 * 179.97438 * 29 28 24 31 31 H 0.96997 * 119.99907 * 0.02562 * 1 2 3 32 32 H 0.96998 * 120.00152 * 0.02562 * 9 7 2 33 33 H 1.08994 * 109.46751 * 300.00348 * 12 10 9 34 34 H 1.08996 * 109.47150 * 60.00521 * 12 10 9 35 35 H 1.08998 * 109.47338 * 180.02562 * 13 12 10 36 36 H 1.09001 * 109.46979 * 300.00130 * 13 12 10 37 37 H 1.08993 * 109.46833 * 59.99888 * 14 13 12 38 38 H 1.08998 * 109.47292 * 180.02562 * 14 13 12 39 39 H 1.09001 * 109.47157 * 299.99766 * 15 14 13 40 40 H 1.09000 * 109.46923 * 180.02562 * 15 14 13 41 41 H 0.97000 * 120.00410 * 95.00338 * 18 16 15 42 42 H 1.08001 * 120.51457 * 359.97438 * 22 21 19 43 43 H 1.08999 * 115.54959 * 154.43319 * 25 24 23 44 44 H 1.09000 * 117.50011 * 0.02562 * 26 25 24 45 45 H 1.09005 * 117.49615 * 145.01966 * 26 25 24 46 46 H 1.08996 * 117.50327 * 214.98319 * 27 25 24 47 47 H 1.09002 * 117.49562 * 359.97022 * 27 25 24 48 48 H 0.96710 * 113.99933 * 270.02156 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 1.4703 -2.1375 0.0005 9 7 3.3796 -1.2021 0.0011 10 6 4.1121 -2.4710 0.0011 11 1 3.5650 -3.2064 -0.5888 12 6 4.2577 -2.9758 1.4380 13 6 5.0232 -4.3005 1.4381 14 6 6.4106 -4.0878 0.8292 15 6 6.2650 -3.5829 -0.6077 16 6 5.4996 -2.2582 -0.6078 17 1 6.0464 -1.5226 -0.0178 18 7 5.3597 -1.7752 -1.9838 19 6 6.3488 -1.0549 -2.5489 20 8 7.3574 -0.8065 -1.9169 21 6 6.2053 -0.5632 -3.9325 22 6 5.0573 -0.8421 -4.6799 23 7 4.9678 -0.3770 -5.9141 24 6 5.9443 0.3311 -6.4488 25 6 5.7923 0.8302 -7.8626 26 6 4.4252 0.6610 -8.5284 27 6 5.6028 -0.2145 -8.9641 28 7 7.0478 0.6159 -5.7882 29 6 7.2232 0.1953 -4.5412 30 8 8.3587 0.4905 -3.8678 31 1 -0.4850 0.8400 -0.0004 32 1 3.8646 -0.3621 0.0014 33 1 4.8048 -2.2403 2.0277 34 1 3.2693 -3.1269 1.8719 35 1 5.1265 -4.6604 2.4617 36 1 4.4764 -5.0361 0.8481 37 1 6.9574 -3.3523 1.4191 38 1 6.9558 -5.0317 0.8288 39 1 5.7182 -4.3185 -1.1977 40 1 7.2535 -3.4319 -1.0416 41 1 4.5552 -1.9735 -2.4881 42 1 4.2539 -1.4250 -4.2541 43 1 6.3653 1.7240 -8.1097 44 1 3.6356 0.1889 -7.9437 45 1 4.0990 1.4432 -9.2139 46 1 6.0508 -0.0081 -9.9361 47 1 5.5885 -1.2629 -8.6663 48 1 9.0613 -0.1655 -3.9749 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085355673.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:53:49 Heat of formation + Delta-G solvation = 6.311274 kcal Electronic energy + Delta-G solvation = -30924.011598 eV Core-core repulsion = 26787.324063 eV Total energy + Delta-G solvation = -4136.687535 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.179 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.63516 -39.80418 -38.38476 -37.66468 -36.91477 -34.27111 -34.10333 -33.49443 -31.75007 -31.39444 -29.41788 -28.19765 -26.03842 -24.53246 -23.54655 -22.74412 -22.63489 -21.68462 -21.06666 -20.49178 -19.83349 -18.89316 -18.38096 -18.02090 -17.28449 -16.71198 -15.94146 -15.59830 -15.20004 -15.08220 -14.73374 -14.55112 -14.42769 -14.06526 -14.02340 -13.60681 -13.54308 -13.22967 -12.71556 -12.56388 -12.41045 -12.33668 -12.30073 -11.80223 -11.49831 -11.41777 -11.21646 -11.06567 -10.99879 -10.92426 -10.80120 -10.74397 -10.66320 -10.42522 -10.17401 -9.92022 -9.71870 -9.65835 -9.62531 -9.47414 -9.01099 -8.83053 -7.36194 -5.84892 -3.21150 0.15181 0.69566 2.70575 2.92217 3.15869 3.33145 3.36138 3.38773 3.42840 3.50511 3.81309 4.01114 4.48334 4.52847 4.54307 4.60990 4.69577 4.72490 4.84206 4.96956 5.05976 5.14561 5.26758 5.34960 5.35459 5.41309 5.52428 5.53881 5.60461 5.69344 5.75204 5.79365 5.84074 5.87699 5.97244 5.98092 6.14829 6.28471 6.31776 6.35433 6.39128 6.57599 6.65002 6.75212 6.90896 7.19338 7.57475 7.74291 7.89884 8.23938 8.33957 9.11712 9.84747 10.03718 11.32955 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.008984 B = 0.003779 C = 0.003039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3115.758926 B = 7407.117367 C = 9210.965566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.011 3.989 3 Si 0.878 3.122 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.246 4.246 8 H 0.092 0.908 9 N -0.747 5.747 10 C 0.178 3.822 11 H 0.061 0.939 12 C -0.133 4.133 13 C -0.120 4.120 14 C -0.114 4.114 15 C -0.123 4.123 16 C 0.138 3.862 17 H 0.086 0.914 18 N -0.704 5.704 19 C 0.568 3.432 20 O -0.526 6.526 21 C -0.264 4.264 22 C 0.206 3.794 23 N -0.523 5.523 24 C 0.391 3.609 25 C -0.110 4.110 26 C -0.150 4.150 27 C -0.152 4.152 28 N -0.541 5.541 29 C 0.421 3.579 30 O -0.452 6.452 31 H 0.260 0.740 32 H 0.362 0.638 33 H 0.056 0.944 34 H 0.071 0.929 35 H 0.057 0.943 36 H 0.060 0.940 37 H 0.062 0.938 38 H 0.059 0.941 39 H 0.064 0.936 40 H 0.063 0.937 41 H 0.402 0.598 42 H 0.181 0.819 43 H 0.132 0.868 44 H 0.114 0.886 45 H 0.103 0.897 46 H 0.104 0.896 47 H 0.098 0.902 48 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.443 -6.518 -13.089 20.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.185 4.185 3 Si 0.708 3.292 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.376 4.376 8 H 0.110 0.890 9 N -0.389 5.389 10 C 0.068 3.932 11 H 0.079 0.921 12 C -0.174 4.174 13 C -0.158 4.158 14 C -0.152 4.152 15 C -0.162 4.162 16 C 0.033 3.967 17 H 0.104 0.896 18 N -0.355 5.355 19 C 0.352 3.648 20 O -0.403 6.403 21 C -0.274 4.274 22 C 0.040 3.960 23 N -0.239 5.239 24 C 0.125 3.875 25 C -0.130 4.130 26 C -0.187 4.187 27 C -0.190 4.190 28 N -0.265 5.265 29 C 0.232 3.768 30 O -0.259 6.259 31 H 0.070 0.930 32 H 0.195 0.805 33 H 0.075 0.925 34 H 0.090 0.910 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.238 0.762 42 H 0.198 0.802 43 H 0.150 0.850 44 H 0.132 0.868 45 H 0.121 0.879 46 H 0.123 0.877 47 H 0.116 0.884 48 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges 14.572 -5.564 -13.285 20.489 hybrid contribution 0.550 0.701 0.760 1.171 sum 15.122 -4.863 -12.525 20.229 Atomic orbital electron populations 1.69688 1.05047 1.25888 1.57111 1.24618 0.95107 0.96983 1.01791 0.86669 0.79353 0.85340 0.77841 1.21237 1.21652 1.20335 1.19025 0.80368 0.94633 1.43544 0.89039 1.42815 1.04046 1.01805 1.90278 1.20453 0.89022 0.89589 0.94160 0.92110 1.22185 1.00601 0.95527 0.99098 1.21581 0.95549 0.98420 1.00250 1.21482 0.97567 1.00621 0.95567 1.21860 1.00309 0.96553 0.97467 1.21422 0.98146 0.95668 0.81417 0.89559 1.45873 1.19867 1.53964 1.15750 1.17529 0.83951 0.78438 0.84843 1.90797 1.29202 1.57246 1.63054 1.22065 0.99811 1.06550 0.98933 1.23576 0.94044 0.90293 0.88120 1.68139 1.29621 1.13148 1.12953 1.22136 0.83049 0.87495 0.94792 1.20724 1.03946 1.02292 0.86032 1.23099 0.91183 1.02451 1.01990 1.23012 1.02288 0.96522 0.97202 1.67779 1.26053 1.24418 1.08284 1.19390 0.87588 0.84472 0.85363 1.84671 1.22902 1.50856 1.67515 0.92989 0.80542 0.92513 0.90997 0.92456 0.92135 0.91946 0.92195 0.91744 0.91840 0.76190 0.80229 0.85020 0.86757 0.87900 0.87746 0.88372 0.72764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.28 13.97 55.49 0.78 -27.50 16 2 C 0.01 0.32 5.50 -17.43 -0.10 0.23 16 3 Si 0.88 22.15 27.74 -169.99 -4.71 17.44 16 4 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 5 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 6 H -0.28 -6.79 6.52 56.52 0.37 -6.42 16 7 C -0.25 -6.46 10.41 -15.06 -0.16 -6.62 16 8 H 0.09 2.56 8.06 -52.49 -0.42 2.14 16 9 N -0.75 -16.34 4.76 -53.42 -0.25 -16.59 16 10 C 0.18 3.05 2.29 -67.93 -0.16 2.89 16 11 H 0.06 1.04 8.08 -51.93 -0.42 0.62 16 12 C -0.13 -2.13 5.50 -26.73 -0.15 -2.27 16 13 C -0.12 -1.49 5.92 -26.73 -0.16 -1.65 16 14 C -0.11 -1.32 5.92 -26.73 -0.16 -1.48 16 15 C -0.12 -1.52 5.49 -26.73 -0.15 -1.67 16 16 C 0.14 2.09 1.98 -67.93 -0.13 1.95 16 17 H 0.09 1.49 7.58 -51.93 -0.39 1.10 16 18 N -0.70 -10.20 4.86 -54.84 -0.27 -10.46 16 19 C 0.57 8.77 7.74 -12.47 -0.10 8.67 16 20 O -0.53 -9.35 14.98 -15.86 -0.24 -9.59 16 21 C -0.26 -3.73 5.92 -104.56 -0.62 -4.35 16 22 C 0.21 2.64 10.80 -16.81 -0.18 2.45 16 23 N -0.52 -6.84 9.31 -10.44 -0.10 -6.93 16 24 C 0.39 5.04 7.31 -157.13 -1.15 3.89 16 25 C -0.11 -1.07 6.23 -91.77 -0.57 -1.65 16 26 C -0.15 -1.24 10.01 -26.69 -0.27 -1.51 16 27 C -0.15 -1.15 10.24 -26.70 -0.27 -1.42 16 28 N -0.54 -7.55 10.34 -10.47 -0.11 -7.66 16 29 C 0.42 6.00 7.85 -16.19 -0.13 5.88 16 30 O -0.45 -6.08 11.81 -38.66 -0.46 -6.54 16 31 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 32 H 0.36 8.27 5.66 -40.82 -0.23 8.04 16 33 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 34 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.40 5.33 6.73 -40.82 -0.27 5.06 16 42 H 0.18 1.90 6.53 -52.49 -0.34 1.56 16 43 H 0.13 1.16 8.14 -51.93 -0.42 0.74 16 44 H 0.11 1.10 7.53 -51.93 -0.39 0.71 16 45 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 46 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 48 H 0.41 3.51 9.06 45.56 0.41 3.92 16 LS Contribution 392.85 15.07 5.92 5.92 Total: -1.00 -33.71 392.85 -10.18 -43.89 By element: Atomic # 1 Polarization: 20.98 SS G_CDS: -6.30 Total: 14.68 kcal Atomic # 6 Polarization: 7.79 SS G_CDS: -4.44 Total: 3.35 kcal Atomic # 7 Polarization: -69.20 SS G_CDS: 0.05 Total: -69.15 kcal Atomic # 8 Polarization: -15.43 SS G_CDS: -0.69 Total: -16.12 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -4.71 Total: 17.44 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -33.71 -10.18 -43.89 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085355673.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.198 kcal (2) G-P(sol) polarization free energy of solvation -33.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.887 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds