Wall clock time and date at job start Wed Apr 1 2020 03:53:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86794 * 119.99868 * 2 1 4 4 H 1.48505 * 109.46931 * 269.99834 * 3 2 1 5 5 H 1.48495 * 109.47458 * 29.99619 * 3 2 1 6 6 H 1.48503 * 109.47251 * 149.99913 * 3 2 1 7 7 C 1.38812 * 119.99836 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00272 * 0.02562 * 7 2 1 9 9 N 1.36939 * 119.99639 * 180.02562 * 7 2 1 10 10 C 1.46508 * 119.99528 * 180.02562 * 9 7 2 11 11 H 1.09001 * 109.47213 * 35.00171 * 10 9 7 12 12 C 1.53000 * 109.47047 * 274.99856 * 10 9 7 13 13 C 1.52997 * 109.46977 * 180.02562 * 12 10 9 14 14 C 1.53005 * 109.47302 * 60.00009 * 13 12 10 15 15 C 1.53000 * 109.46939 * 300.00277 * 14 13 12 16 16 C 1.52997 * 109.47350 * 59.99752 * 15 14 13 17 17 H 1.09001 * 109.46979 * 59.99905 * 16 15 14 18 18 N 1.46504 * 109.46930 * 180.02562 * 16 15 14 19 19 C 1.34777 * 119.99854 * 274.99613 * 18 16 15 20 20 O 1.21593 * 119.99953 * 0.02562 * 19 18 16 21 21 C 1.47537 * 120.00133 * 180.27865 * 19 18 16 22 22 C 1.39802 * 120.97627 * 359.44411 * 21 19 18 23 23 N 1.32197 * 118.98028 * 179.71679 * 22 21 19 24 24 C 1.31940 * 121.13553 * 0.57748 * 23 22 21 25 25 C 1.50697 * 118.90261 * 179.67852 * 24 23 22 26 26 C 1.53004 * 117.49668 * 8.76533 * 25 24 23 27 27 C 1.52998 * 117.50010 * 300.10914 * 25 24 23 28 28 N 1.31728 * 122.19428 * 359.69619 * 24 23 22 29 29 C 1.32768 * 120.87888 * 0.02562 * 28 24 23 30 30 O 1.35275 * 120.61806 * 179.97438 * 29 28 24 31 31 H 0.96997 * 119.99907 * 0.02562 * 1 2 3 32 32 H 0.96998 * 120.00152 * 0.02562 * 9 7 2 33 33 H 1.08994 * 109.46751 * 300.00348 * 12 10 9 34 34 H 1.08996 * 109.47150 * 60.00521 * 12 10 9 35 35 H 1.08998 * 109.47338 * 180.02562 * 13 12 10 36 36 H 1.09001 * 109.46979 * 300.00130 * 13 12 10 37 37 H 1.08993 * 109.46833 * 59.99888 * 14 13 12 38 38 H 1.08998 * 109.47292 * 180.02562 * 14 13 12 39 39 H 1.09001 * 109.47157 * 299.99766 * 15 14 13 40 40 H 1.09000 * 109.46923 * 180.02562 * 15 14 13 41 41 H 0.97000 * 120.00410 * 95.00338 * 18 16 15 42 42 H 1.08001 * 120.51457 * 359.97438 * 22 21 19 43 43 H 1.08999 * 115.54959 * 154.43319 * 25 24 23 44 44 H 1.09000 * 117.50011 * 0.02562 * 26 25 24 45 45 H 1.09005 * 117.49615 * 145.01966 * 26 25 24 46 46 H 1.08996 * 117.50327 * 214.98319 * 27 25 24 47 47 H 1.09002 * 117.49562 * 359.97022 * 27 25 24 48 48 H 0.96710 * 113.99933 * 270.02156 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 1.4703 -2.1375 0.0005 9 7 3.3796 -1.2021 0.0011 10 6 4.1121 -2.4710 0.0011 11 1 3.5650 -3.2064 -0.5888 12 6 4.2577 -2.9758 1.4380 13 6 5.0232 -4.3005 1.4381 14 6 6.4106 -4.0878 0.8292 15 6 6.2650 -3.5829 -0.6077 16 6 5.4996 -2.2582 -0.6078 17 1 6.0464 -1.5226 -0.0178 18 7 5.3597 -1.7752 -1.9838 19 6 6.3488 -1.0549 -2.5489 20 8 7.3574 -0.8065 -1.9169 21 6 6.2053 -0.5632 -3.9325 22 6 5.0573 -0.8421 -4.6799 23 7 4.9678 -0.3770 -5.9141 24 6 5.9443 0.3311 -6.4488 25 6 5.7923 0.8302 -7.8626 26 6 4.4252 0.6610 -8.5284 27 6 5.6028 -0.2145 -8.9641 28 7 7.0478 0.6159 -5.7882 29 6 7.2232 0.1953 -4.5412 30 8 8.3587 0.4905 -3.8678 31 1 -0.4850 0.8400 -0.0004 32 1 3.8646 -0.3621 0.0014 33 1 4.8048 -2.2403 2.0277 34 1 3.2693 -3.1269 1.8719 35 1 5.1265 -4.6604 2.4617 36 1 4.4764 -5.0361 0.8481 37 1 6.9574 -3.3523 1.4191 38 1 6.9558 -5.0317 0.8288 39 1 5.7182 -4.3185 -1.1977 40 1 7.2535 -3.4319 -1.0416 41 1 4.5552 -1.9735 -2.4881 42 1 4.2539 -1.4250 -4.2541 43 1 6.3653 1.7240 -8.1097 44 1 3.6356 0.1889 -7.9437 45 1 4.0990 1.4432 -9.2139 46 1 6.0508 -0.0081 -9.9361 47 1 5.5885 -1.2629 -8.6663 48 1 9.0613 -0.1655 -3.9749 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085355673.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:53:48 Heat of formation + Delta-G solvation = -18.128826 kcal Electronic energy + Delta-G solvation = -30925.071401 eV Core-core repulsion = 26787.324063 eV Total energy + Delta-G solvation = -4137.747337 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.179 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.65690 -41.00499 -39.46788 -38.80297 -37.69906 -35.94244 -35.34865 -34.54737 -33.34830 -32.75613 -30.62500 -29.64440 -27.03008 -25.56340 -25.32051 -23.84384 -23.24287 -22.64250 -22.48383 -21.67469 -21.01876 -19.99566 -19.73743 -19.28994 -18.67695 -17.67108 -17.15015 -16.79819 -16.58587 -16.17904 -15.95140 -15.75121 -15.58008 -15.18957 -15.05999 -14.94370 -14.73099 -14.68405 -14.46618 -13.73838 -13.70492 -13.43845 -13.24855 -13.08720 -12.99730 -12.57984 -12.42803 -12.33107 -12.16680 -12.10918 -12.05761 -11.85343 -11.72312 -11.69992 -11.47720 -11.43025 -11.17481 -11.05813 -10.84307 -10.63603 -10.47437 -10.03775 -9.32105 -8.03573 -5.34558 -0.87702 -0.31981 1.30238 1.34038 1.38179 1.60478 1.88761 2.08906 2.37952 2.42959 2.59965 2.97658 3.10022 3.28708 3.42752 3.48814 3.61989 3.72366 3.81590 3.84392 4.05566 4.10751 4.18552 4.23139 4.27325 4.34429 4.41552 4.47092 4.58253 4.67421 4.79701 4.85134 4.94741 4.98959 5.00207 5.10951 5.15600 5.24060 5.29112 5.30614 5.31695 5.44436 5.51088 5.56477 5.63227 5.79328 6.21045 6.33832 6.40454 6.73978 7.04788 7.06605 7.82720 7.99887 9.17776 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.008984 B = 0.003779 C = 0.003039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3115.758926 B = 7407.117367 C = 9210.965566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.977 5.977 2 C -0.049 4.049 3 Si 0.933 3.067 4 H -0.287 1.287 5 H -0.299 1.299 6 H -0.267 1.267 7 C -0.213 4.213 8 H 0.071 0.929 9 N -0.750 5.750 10 C 0.175 3.825 11 H 0.066 0.934 12 C -0.130 4.130 13 C -0.111 4.111 14 C -0.110 4.110 15 C -0.114 4.114 16 C 0.146 3.854 17 H 0.065 0.935 18 N -0.701 5.701 19 C 0.571 3.429 20 O -0.553 6.553 21 C -0.279 4.279 22 C 0.210 3.790 23 N -0.531 5.531 24 C 0.386 3.614 25 C -0.131 4.131 26 C -0.146 4.146 27 C -0.133 4.133 28 N -0.554 5.554 29 C 0.417 3.583 30 O -0.464 6.464 31 H 0.256 0.744 32 H 0.358 0.642 33 H 0.048 0.952 34 H 0.048 0.952 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.057 0.943 38 H 0.086 0.914 39 H 0.080 0.920 40 H 0.063 0.937 41 H 0.408 0.592 42 H 0.199 0.801 43 H 0.141 0.859 44 H 0.098 0.902 45 H 0.124 0.876 46 H 0.130 0.870 47 H 0.092 0.908 48 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.090 -7.621 -14.325 22.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.628 5.628 2 C -0.241 4.241 3 Si 0.763 3.237 4 H -0.214 1.214 5 H -0.226 1.226 6 H -0.192 1.192 7 C -0.344 4.344 8 H 0.089 0.911 9 N -0.392 5.392 10 C 0.067 3.933 11 H 0.084 0.916 12 C -0.170 4.170 13 C -0.149 4.149 14 C -0.148 4.148 15 C -0.153 4.153 16 C 0.041 3.959 17 H 0.083 0.917 18 N -0.351 5.351 19 C 0.357 3.643 20 O -0.432 6.432 21 C -0.288 4.288 22 C 0.044 3.956 23 N -0.247 5.247 24 C 0.122 3.878 25 C -0.151 4.151 26 C -0.184 4.184 27 C -0.171 4.171 28 N -0.279 5.279 29 C 0.228 3.772 30 O -0.275 6.275 31 H 0.065 0.935 32 H 0.190 0.810 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.075 0.925 38 H 0.105 0.895 39 H 0.099 0.901 40 H 0.082 0.918 41 H 0.245 0.755 42 H 0.215 0.785 43 H 0.159 0.841 44 H 0.117 0.883 45 H 0.142 0.858 46 H 0.149 0.851 47 H 0.110 0.890 48 H 0.293 0.707 Dipole moment (debyes) X Y Z Total from point charges 16.277 -6.718 -14.525 22.826 hybrid contribution 0.068 0.954 1.113 1.468 sum 16.346 -5.764 -13.412 21.915 Atomic orbital electron populations 1.69821 1.06594 1.26178 1.60235 1.25170 0.95643 0.99814 1.03500 0.85752 0.78437 0.81941 0.77542 1.21371 1.22557 1.19246 1.19009 0.82136 0.93399 1.39825 0.91125 1.42867 1.02616 1.03555 1.90143 1.20691 0.89785 0.87531 0.95327 0.91600 1.22072 0.99908 0.97601 0.97460 1.21520 0.95598 0.96164 1.01648 1.21480 0.97052 1.01790 0.94511 1.21809 0.99927 0.95039 0.98550 1.21291 0.96534 0.96794 0.81239 0.91680 1.45843 1.20010 1.53754 1.15505 1.17657 0.83560 0.77964 0.85169 1.90776 1.30250 1.58331 1.63840 1.21950 1.00599 1.07807 0.98446 1.23883 0.93964 0.89785 0.88009 1.68244 1.29766 1.13660 1.13007 1.22803 0.82505 0.86650 0.95879 1.20933 1.05529 1.03633 0.84996 1.23156 0.90305 1.03133 1.01773 1.23119 1.01163 0.95630 0.97229 1.67872 1.26689 1.25056 1.08266 1.19556 0.87824 0.84254 0.85586 1.84616 1.23384 1.51886 1.67627 0.93525 0.80963 0.93334 0.93308 0.90942 0.91095 0.92459 0.89504 0.90144 0.91803 0.75473 0.78485 0.84132 0.88309 0.85798 0.85148 0.88965 0.70705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -60.71 13.97 21.65 0.30 -60.41 16 2 C -0.05 -2.80 5.50 84.86 0.47 -2.34 16 3 Si 0.93 46.33 27.74 68.60 1.90 48.23 16 4 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 5 H -0.30 -15.15 7.11 99.48 0.71 -14.44 16 6 H -0.27 -12.60 6.52 99.48 0.65 -11.96 16 7 C -0.21 -11.22 10.41 84.03 0.87 -10.34 16 8 H 0.07 4.01 8.06 -2.91 -0.02 3.99 16 9 N -0.75 -32.43 4.76 -322.92 -1.54 -33.96 16 10 C 0.17 5.80 2.29 44.99 0.10 5.90 16 11 H 0.07 2.16 8.08 -2.39 -0.02 2.14 16 12 C -0.13 -4.00 5.50 30.59 0.17 -3.83 16 13 C -0.11 -2.46 5.92 30.59 0.18 -2.28 16 14 C -0.11 -2.20 5.92 30.60 0.18 -2.02 16 15 C -0.11 -2.54 5.49 30.59 0.17 -2.37 16 16 C 0.15 4.22 1.98 44.99 0.09 4.31 16 17 H 0.07 2.20 7.58 -2.39 -0.02 2.18 16 18 N -0.70 -19.50 4.86 -445.69 -2.17 -21.67 16 19 C 0.57 17.22 7.74 86.70 0.67 17.89 16 20 O -0.55 -19.39 14.98 16.21 0.24 -19.14 16 21 C -0.28 -7.70 5.92 -19.83 -0.12 -7.82 16 22 C 0.21 5.20 10.80 85.02 0.92 6.12 16 23 N -0.53 -13.44 9.31 -186.93 -1.74 -15.18 16 24 C 0.39 9.62 7.31 138.73 1.01 10.63 16 25 C -0.13 -2.36 6.23 -11.54 -0.07 -2.43 16 26 C -0.15 -2.15 10.01 30.62 0.31 -1.84 16 27 C -0.13 -1.71 10.24 30.62 0.31 -1.39 16 28 N -0.55 -15.13 10.34 -299.86 -3.10 -18.23 16 29 C 0.42 11.72 7.85 85.17 0.67 12.39 16 30 O -0.46 -12.35 11.81 -65.39 -0.77 -13.12 16 31 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 32 H 0.36 16.12 5.66 -92.71 -0.52 15.59 16 33 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.41 10.30 6.73 -92.71 -0.62 9.67 16 42 H 0.20 3.94 6.53 -2.91 -0.02 3.92 16 43 H 0.14 2.24 8.14 -2.39 -0.02 2.22 16 44 H 0.10 1.79 7.53 -2.39 -0.02 1.78 16 45 H 0.12 1.28 8.14 -2.38 -0.02 1.27 16 46 H 0.13 1.01 8.14 -2.39 -0.02 0.99 16 47 H 0.09 1.31 8.14 -2.39 -0.02 1.30 16 48 H 0.43 7.16 9.06 -74.05 -0.67 6.49 16 Total: -1.00 -73.23 392.85 -1.79 -75.02 By element: Atomic # 1 Polarization: 38.75 SS G_CDS: -0.86 Total: 37.89 kcal Atomic # 6 Polarization: 14.65 SS G_CDS: 5.94 Total: 20.58 kcal Atomic # 7 Polarization: -141.22 SS G_CDS: -8.24 Total: -149.46 kcal Atomic # 8 Polarization: -31.74 SS G_CDS: -0.53 Total: -32.27 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 1.90 Total: 48.23 kcal Total: -73.23 -1.79 -75.02 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085355673.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.896 kcal (2) G-P(sol) polarization free energy of solvation -73.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds