Wall clock time and date at job start Wed Apr 1 2020 03:19:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86793 * 120.00329 * 2 1 4 4 H 1.48499 * 109.47023 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47026 * 299.99936 * 3 2 1 6 6 H 1.48493 * 109.47532 * 60.00015 * 3 2 1 7 7 C 1.38810 * 119.99416 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99839 * 179.97438 * 7 2 1 9 9 N 1.36933 * 120.00334 * 0.02562 * 7 2 1 10 10 C 1.47290 * 125.79201 * 359.97438 * 9 7 2 11 11 C 1.54325 * 107.30820 * 178.93107 * 10 9 7 12 12 C 1.55162 * 102.94263 * 337.81956 * 11 10 9 13 13 H 1.09003 * 111.00530 * 277.42932 * 12 11 10 14 14 C 1.52997 * 111.03991 * 153.59097 * 12 11 10 15 15 N 1.46502 * 109.47283 * 181.33174 * 14 12 11 16 16 C 1.34767 * 119.99902 * 179.97438 * 15 14 12 17 17 O 1.21286 * 120.00275 * 0.02562 * 16 15 14 18 18 C 1.50704 * 119.99782 * 180.02562 * 16 15 14 19 19 N 1.46508 * 109.47009 * 179.97438 * 18 16 15 20 20 C 1.34778 * 119.99857 * 179.97438 * 19 18 16 21 21 O 1.21587 * 119.99969 * 0.02562 * 20 19 18 22 22 N 1.34772 * 119.99767 * 179.97438 * 20 19 18 23 23 C 1.39949 * 119.99945 * 175.37954 * 22 20 19 24 24 C 1.38863 * 120.07188 * 214.81886 * 23 22 20 25 25 C 1.38112 * 119.92997 * 179.77114 * 24 23 22 26 26 C 1.38279 * 120.06687 * 0.50199 * 25 24 23 27 27 C 1.38272 * 120.14174 * 359.75027 * 26 25 24 28 28 C 1.38108 * 120.07343 * 359.97438 * 27 26 25 29 29 C 1.47425 * 125.65302 * 179.97438 * 9 7 2 30 30 H 0.97004 * 119.99536 * 0.02562 * 1 2 3 31 31 H 1.09004 * 109.85405 * 59.50912 * 10 9 7 32 32 H 1.08993 * 109.87699 * 298.36559 * 10 9 7 33 33 H 1.08998 * 110.72266 * 219.45935 * 11 10 9 34 34 H 1.08994 * 110.87472 * 96.25525 * 11 10 9 35 35 H 1.09003 * 109.46796 * 301.33481 * 14 12 11 36 36 H 1.09001 * 109.46710 * 61.33051 * 14 12 11 37 37 H 0.96996 * 119.99800 * 0.02562 * 15 14 12 38 38 H 1.09001 * 109.46891 * 299.99705 * 18 16 15 39 39 H 1.08995 * 109.47119 * 60.00314 * 18 16 15 40 40 H 0.96994 * 119.99779 * 0.02562 * 19 18 16 41 41 H 0.97001 * 120.00221 * 355.38659 * 22 20 19 42 42 H 1.08004 * 120.03161 * 359.97438 * 24 23 22 43 43 H 1.08002 * 119.96500 * 180.25388 * 25 24 23 44 44 H 1.08008 * 119.92611 * 179.76856 * 26 25 24 45 45 H 1.08007 * 119.96636 * 180.02562 * 27 26 25 46 46 H 1.08004 * 120.03832 * 180.02562 * 28 27 26 47 47 H 1.09002 * 110.36970 * 85.25674 * 29 9 7 48 48 H 1.08997 * 110.36591 * 323.04703 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.7102 1.3462 -0.0006 5 1 1.8915 2.3963 -1.2125 6 1 1.8916 2.3964 1.2124 7 6 2.0101 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0001 9 7 1.3254 -2.3880 0.0005 10 6 -0.1400 -2.5366 0.0005 11 6 -0.4482 -4.0485 -0.0269 12 6 0.8534 -4.6580 -0.6117 13 1 0.8585 -4.5976 -1.7000 14 6 1.0416 -6.1027 -0.1446 15 7 2.2938 -6.6330 -0.6897 16 6 2.6696 -7.8963 -0.4085 17 8 1.9708 -8.5944 0.2954 18 6 3.9580 -8.4416 -0.9687 19 7 4.1387 -9.8246 -0.5205 20 6 5.2291 -10.5193 -0.9012 21 8 6.0630 -9.9981 -1.6163 22 7 5.3956 -11.7915 -0.4885 23 6 6.4765 -12.5445 -0.9608 24 6 6.3318 -13.9082 -1.1795 25 6 7.3992 -14.6477 -1.6501 26 6 8.6139 -14.0334 -1.8935 27 6 8.7627 -12.6767 -1.6718 28 6 7.6976 -11.9306 -1.2067 29 6 1.9331 -3.7312 0.0005 30 1 -0.4850 0.8401 -0.0004 31 1 -0.5608 -2.0564 -0.8829 32 1 -0.5578 -2.0895 0.9025 33 1 -1.2977 -4.2572 -0.6772 34 1 -0.6326 -4.4257 0.9789 35 1 1.0787 -6.1305 0.9444 36 1 0.2068 -6.7095 -0.4953 37 1 2.8528 -6.0745 -1.2523 38 1 3.9210 -8.4140 -2.0577 39 1 4.7924 -7.8344 -0.6179 40 1 3.4733 -10.2405 0.0496 41 1 4.7661 -12.1852 0.1358 42 1 5.3847 -14.3893 -0.9849 43 1 7.2861 -15.7075 -1.8243 44 1 9.4481 -14.6146 -2.2580 45 1 9.7126 -12.1997 -1.8633 46 1 7.8143 -10.8708 -1.0340 47 1 2.1665 -4.0420 1.0189 48 1 2.8334 -3.7402 -0.6138 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663608120.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:19:44 Heat of formation + Delta-G solvation = -8.077568 kcal Electronic energy + Delta-G solvation = -28530.859836 eV Core-core repulsion = 24393.548354 eV Total energy + Delta-G solvation = -4137.311482 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.179 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.07705 -39.96418 -38.85100 -37.73073 -35.21100 -34.99275 -34.62414 -32.59710 -31.21046 -30.41587 -29.79485 -28.66561 -27.39383 -25.41800 -23.65896 -23.20393 -22.69998 -21.16341 -20.92700 -20.01994 -19.88110 -19.05489 -18.21284 -16.99465 -16.80112 -16.52662 -16.40208 -16.25153 -15.53952 -15.28370 -15.17192 -14.67781 -14.50667 -14.43255 -14.21200 -13.73091 -13.70786 -13.49934 -13.31080 -13.11431 -12.70890 -12.40625 -12.05745 -12.04119 -11.80218 -11.60215 -11.46157 -10.93685 -10.84313 -10.79385 -10.56082 -10.39528 -10.23637 -10.07478 -9.95920 -9.87444 -9.69953 -9.59672 -9.23639 -9.15254 -8.64437 -8.45085 -6.87388 -5.75134 -3.08692 0.97521 1.10453 2.04948 2.35309 2.72547 3.04520 3.37466 3.43128 3.45497 3.52482 3.77011 4.42619 4.47263 4.57245 4.64422 4.85370 5.00699 5.01706 5.03170 5.09604 5.16153 5.21300 5.27302 5.34566 5.49360 5.60695 5.68403 5.81482 5.86701 5.93156 5.95966 5.97695 6.02142 6.18409 6.25722 6.27399 6.27848 6.43588 6.46912 6.49774 6.60758 6.73512 6.84260 7.29597 7.48869 7.52194 7.58096 7.78690 7.95020 8.08865 8.21646 9.17929 9.78548 10.44400 11.36898 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.021942 B = 0.001519 C = 0.001432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.810658 B =18423.807954 C =19553.881145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.008 4.008 3 Si 0.912 3.088 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.229 4.229 8 H 0.078 0.922 9 N -0.606 5.606 10 C 0.176 3.824 11 C -0.134 4.134 12 C -0.119 4.119 13 H 0.081 0.919 14 C 0.133 3.867 15 N -0.716 5.716 16 C 0.508 3.492 17 O -0.545 6.545 18 C 0.117 3.883 19 N -0.728 5.728 20 C 0.708 3.292 21 O -0.573 6.573 22 N -0.686 5.686 23 C 0.165 3.835 24 C -0.149 4.149 25 C -0.103 4.103 26 C -0.139 4.139 27 C -0.102 4.102 28 C -0.120 4.120 29 C 0.142 3.858 30 H 0.252 0.748 31 H 0.047 0.953 32 H 0.043 0.957 33 H 0.062 0.938 34 H 0.059 0.941 35 H 0.070 0.930 36 H 0.067 0.933 37 H 0.406 0.594 38 H 0.101 0.899 39 H 0.102 0.898 40 H 0.410 0.590 41 H 0.409 0.591 42 H 0.124 0.876 43 H 0.125 0.875 44 H 0.121 0.879 45 H 0.125 0.875 46 H 0.142 0.858 47 H 0.019 0.981 48 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.427 -28.385 -2.556 30.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.205 4.205 3 Si 0.742 3.258 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.358 4.358 8 H 0.096 0.904 9 N -0.333 5.333 10 C 0.052 3.948 11 C -0.173 4.173 12 C -0.139 4.139 13 H 0.099 0.901 14 C 0.010 3.990 15 N -0.367 5.367 16 C 0.293 3.707 17 O -0.423 6.423 18 C -0.011 4.011 19 N -0.386 5.386 20 C 0.408 3.592 21 O -0.450 6.450 22 N -0.333 5.333 23 C 0.070 3.930 24 C -0.170 4.170 25 C -0.121 4.121 26 C -0.158 4.158 27 C -0.121 4.121 28 C -0.140 4.140 29 C 0.015 3.985 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.089 0.911 36 H 0.086 0.914 37 H 0.241 0.759 38 H 0.119 0.881 39 H 0.120 0.880 40 H 0.247 0.753 41 H 0.244 0.756 42 H 0.142 0.858 43 H 0.143 0.857 44 H 0.139 0.861 45 H 0.143 0.857 46 H 0.159 0.841 47 H 0.036 0.964 48 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 10.543 -28.063 -2.692 30.099 hybrid contribution -0.059 0.872 0.295 0.923 sum 10.484 -27.191 -2.397 29.240 Atomic orbital electron populations 1.69971 1.04899 1.24956 1.57074 1.24807 0.95732 0.97713 1.02216 0.86043 0.78715 0.83740 0.77255 1.20501 1.21745 1.21742 1.19101 0.90450 0.82400 1.43804 0.90380 1.44536 1.01689 0.99834 1.87196 1.21197 0.84331 0.88131 1.01165 1.22854 0.95363 0.99412 0.99685 1.22634 0.98762 0.91849 1.00647 0.90086 1.21455 0.84691 0.93994 0.98903 1.45968 1.25067 1.13272 1.52364 1.20410 0.87073 0.82336 0.80905 1.90692 1.54944 1.58210 1.38485 1.20955 0.96390 0.82581 1.01124 1.44706 1.24246 1.13821 1.55845 1.15748 0.82238 0.80803 0.80409 1.90951 1.43718 1.68965 1.41327 1.42524 1.29350 1.12415 1.49048 1.17522 0.86622 0.90369 0.98508 1.20888 0.99895 0.92691 1.03477 1.20920 0.92724 0.99693 0.98790 1.21152 0.97759 0.95030 1.01851 1.21100 0.98630 0.93908 0.98446 1.21382 0.90752 1.01575 1.00324 1.21564 0.93948 0.86239 0.96732 0.93783 0.93488 0.93856 0.91945 0.92193 0.91128 0.91448 0.75856 0.88101 0.87985 0.75277 0.75576 0.85777 0.85747 0.86060 0.85726 0.84054 0.96357 0.94598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.76 10.34 55.49 0.57 -26.19 16 2 C -0.01 -0.24 5.49 -17.43 -0.10 -0.33 16 3 Si 0.91 21.87 29.55 -169.99 -5.02 16.85 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 6 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 7 C -0.23 -6.28 10.28 -15.06 -0.15 -6.43 16 8 H 0.08 2.06 7.83 -52.48 -0.41 1.65 16 9 N -0.61 -14.98 3.40 -169.86 -0.58 -15.56 16 10 C 0.18 4.14 5.38 -2.92 -0.02 4.12 16 11 C -0.13 -2.32 6.42 -24.89 -0.16 -2.48 16 12 C -0.12 -1.83 3.10 -88.47 -0.27 -2.11 16 13 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 14 C 0.13 1.71 5.13 -4.04 -0.02 1.69 16 15 N -0.72 -7.73 5.41 -60.29 -0.33 -8.05 16 16 C 0.51 5.59 7.90 -10.99 -0.09 5.50 16 17 O -0.55 -7.59 15.67 5.55 0.09 -7.50 16 18 C 0.12 1.05 6.15 -5.19 -0.03 1.02 16 19 N -0.73 -6.59 5.53 -66.41 -0.37 -6.96 16 20 C 0.71 7.39 8.41 -86.92 -0.73 6.65 16 21 O -0.57 -7.81 13.77 5.29 0.07 -7.73 16 22 N -0.69 -5.51 5.34 -14.22 -0.08 -5.59 16 23 C 0.16 1.49 6.30 -83.69 -0.53 0.97 16 24 C -0.15 -1.08 9.97 -39.40 -0.39 -1.47 16 25 C -0.10 -0.69 10.04 -39.61 -0.40 -1.08 16 26 C -0.14 -0.98 10.04 -39.55 -0.40 -1.38 16 27 C -0.10 -0.84 10.04 -39.62 -0.40 -1.24 16 28 C -0.12 -1.20 8.70 -39.40 -0.34 -1.55 16 29 C 0.14 2.69 6.40 -2.53 -0.02 2.68 16 30 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 31 H 0.05 1.22 7.39 -51.93 -0.38 0.84 16 32 H 0.04 1.14 7.52 -51.93 -0.39 0.75 16 33 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.06 0.98 8.04 -51.93 -0.42 0.56 16 35 H 0.07 0.99 8.10 -51.93 -0.42 0.57 16 36 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.41 3.70 8.34 -40.82 -0.34 3.36 16 38 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.41 3.37 7.46 -40.82 -0.30 3.06 16 41 H 0.41 2.04 8.84 -40.82 -0.36 1.68 16 42 H 0.12 0.64 8.06 -52.48 -0.42 0.21 16 43 H 0.12 0.54 8.06 -52.49 -0.42 0.12 16 44 H 0.12 0.59 8.06 -52.48 -0.42 0.17 16 45 H 0.12 0.81 8.06 -52.48 -0.42 0.38 16 46 H 0.14 1.63 6.22 -52.48 -0.33 1.30 16 47 H 0.02 0.36 8.00 -51.93 -0.42 -0.05 16 48 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 397.20 15.07 5.99 5.99 Total: -1.00 -34.49 397.20 -10.83 -45.32 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: -7.13 Total: 4.87 kcal Atomic # 6 Polarization: 8.60 SS G_CDS: -4.04 Total: 4.56 kcal Atomic # 7 Polarization: -61.57 SS G_CDS: -0.77 Total: -62.35 kcal Atomic # 8 Polarization: -15.39 SS G_CDS: 0.16 Total: -15.23 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -34.49 -10.83 -45.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663608120.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.242 kcal (2) G-P(sol) polarization free energy of solvation -34.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds