Wall clock time and date at job start Wed Apr 1 2020 03:19:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86798 * 119.99833 * 2 1 4 4 H 1.48503 * 109.47559 * 275.00473 * 3 2 1 5 5 H 1.48501 * 109.47163 * 35.00507 * 3 2 1 6 6 H 1.48499 * 109.47298 * 155.00328 * 3 2 1 7 7 C 1.38803 * 120.00442 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00424 * 185.06031 * 7 2 1 9 9 N 1.36946 * 119.99804 * 5.06039 * 7 2 1 10 10 C 1.47019 * 125.64948 * 354.98234 * 9 7 2 11 11 C 1.54318 * 107.40408 * 181.10549 * 10 9 7 12 12 C 1.55151 * 102.94157 * 22.11624 * 11 10 9 13 13 H 1.08999 * 111.00440 * 82.57501 * 12 11 10 14 14 C 1.53006 * 111.00770 * 206.42514 * 12 11 10 15 15 N 1.46496 * 109.47296 * 185.00203 * 14 12 11 16 16 C 1.34778 * 119.99811 * 180.02562 * 15 14 12 17 17 O 1.21285 * 119.99829 * 359.97438 * 16 15 14 18 18 C 1.50693 * 120.00246 * 179.97438 * 16 15 14 19 19 N 1.46501 * 109.47684 * 179.97438 * 18 16 15 20 20 C 1.34770 * 120.00422 * 179.97438 * 19 18 16 21 21 O 1.21591 * 120.00142 * 0.02562 * 20 19 18 22 22 N 1.34775 * 120.00074 * 179.97438 * 20 19 18 23 23 C 1.39951 * 119.99776 * 175.39411 * 22 20 19 24 24 C 1.38866 * 120.06585 * 214.81910 * 23 22 20 25 25 C 1.38111 * 119.92725 * 179.77044 * 24 23 22 26 26 C 1.38285 * 120.07241 * 0.50906 * 25 24 23 27 27 C 1.38287 * 120.13449 * 359.73990 * 26 25 24 28 28 C 1.38112 * 120.07118 * 0.02562 * 27 26 25 29 29 C 1.47748 * 125.82220 * 174.89306 * 9 7 2 30 30 H 0.96999 * 120.00319 * 359.97438 * 1 2 3 31 31 H 1.09003 * 109.88238 * 61.60744 * 10 9 7 32 32 H 1.09000 * 109.88197 * 300.60256 * 10 9 7 33 33 H 1.09000 * 110.72254 * 140.47971 * 11 10 9 34 34 H 1.09001 * 110.72047 * 263.57388 * 11 10 9 35 35 H 1.09001 * 109.46459 * 305.00357 * 14 12 11 36 36 H 1.09000 * 109.46747 * 64.99747 * 14 12 11 37 37 H 0.96998 * 120.00294 * 359.97438 * 15 14 12 38 38 H 1.08999 * 109.47112 * 300.00037 * 18 16 15 39 39 H 1.09005 * 109.47200 * 59.99095 * 18 16 15 40 40 H 0.97004 * 119.99276 * 359.97438 * 19 18 16 41 41 H 0.96994 * 120.00467 * 355.39596 * 22 20 19 42 42 H 1.07997 * 120.03804 * 359.97438 * 24 23 22 43 43 H 1.08001 * 119.96620 * 180.25089 * 25 24 23 44 44 H 1.07995 * 119.93171 * 179.72809 * 26 25 24 45 45 H 1.08003 * 119.96064 * 180.02562 * 27 26 25 46 46 H 1.07997 * 120.03241 * 180.02562 * 28 27 26 47 47 H 1.09003 * 110.28960 * 37.02448 * 29 9 7 48 48 H 1.08996 * 110.52614 * 274.75470 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.3919 2.1076 -1.3947 5 1 1.5044 2.6198 0.8032 6 1 3.5966 1.4120 0.5916 7 6 2.0103 -1.2020 -0.0005 8 1 3.0871 -1.2039 0.0820 9 7 1.3296 -2.3857 -0.1057 10 6 -0.1329 -2.5348 -0.1196 11 6 -0.4422 -4.0430 -0.2248 12 6 0.8592 -4.7022 0.3034 13 1 0.8648 -4.7377 1.3928 14 6 1.0456 -6.1003 -0.2896 15 7 2.2156 -6.7372 0.3199 16 6 2.5754 -7.9818 -0.0516 17 8 1.9301 -8.5746 -0.8902 18 6 3.7792 -8.6369 0.5748 19 7 3.9576 -9.9756 0.0071 20 6 4.9787 -10.7522 0.4202 21 8 5.7517 -10.3420 1.2644 22 7 5.1425 -11.9839 -0.1018 23 6 6.2562 -12.7526 0.2550 24 6 6.8482 -13.5944 -0.6774 25 6 7.9501 -14.3481 -0.3237 26 6 8.4575 -14.2732 0.9605 27 6 7.8671 -13.4398 1.8928 28 6 6.7679 -12.6799 1.5439 29 6 1.9393 -3.7261 -0.2259 30 1 -0.4850 0.8400 0.0004 31 1 -0.5509 -2.0098 -0.9786 32 1 -0.5553 -2.1331 0.8015 33 1 -1.2916 -4.3074 0.4051 34 1 -0.6288 -4.3271 -1.2604 35 1 0.1588 -6.7013 -0.0886 36 1 1.1946 -6.0212 -1.3664 37 1 2.7319 -6.2630 0.9903 38 1 4.6658 -8.0356 0.3739 39 1 3.6305 -8.7161 1.6518 40 1 3.3407 -10.3030 -0.6661 41 1 4.4885 -12.3377 -0.7246 42 1 6.4494 -13.6570 -1.6791 43 1 8.4134 -14.9999 -1.0495 44 1 9.3166 -14.8669 1.2360 45 1 8.2660 -13.3832 2.8949 46 1 6.3075 -12.0289 2.2723 47 1 2.8394 -3.7882 0.3858 48 1 2.1733 -3.9475 -1.2672 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663608121.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:19:47 Heat of formation + Delta-G solvation = -7.792129 kcal Electronic energy + Delta-G solvation = -28497.781082 eV Core-core repulsion = 24360.481977 eV Total energy + Delta-G solvation = -4137.299105 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.179 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.08118 -39.96597 -38.85239 -37.72120 -35.21605 -34.99965 -34.63140 -32.60346 -31.21335 -30.41758 -29.78774 -28.65891 -27.41215 -25.39715 -23.65997 -23.20453 -22.70094 -21.16658 -20.92556 -20.05958 -19.87812 -19.04945 -18.21391 -16.98381 -16.79873 -16.55818 -16.45213 -16.17444 -15.64181 -15.29518 -14.98858 -14.76535 -14.62279 -14.32800 -14.17186 -13.72497 -13.70765 -13.55064 -13.28659 -13.12238 -12.70497 -12.40217 -12.06293 -12.03542 -11.81534 -11.60613 -11.48516 -10.93958 -10.82795 -10.79577 -10.54280 -10.40065 -10.24473 -10.09532 -9.96559 -9.88010 -9.68327 -9.60210 -9.23879 -9.15462 -8.62262 -8.45412 -6.86689 -5.75333 -3.08511 0.97269 1.10194 2.04372 2.34721 2.72071 3.03988 3.38083 3.43391 3.45257 3.52225 3.76486 4.42388 4.47086 4.57160 4.64303 4.85193 4.99760 5.01852 5.02628 5.09312 5.14985 5.21044 5.26833 5.34189 5.49745 5.61489 5.68125 5.81710 5.86216 5.92806 5.95406 5.97945 6.01761 6.18169 6.24314 6.26841 6.29001 6.44369 6.46986 6.49322 6.61532 6.73163 6.84517 7.28818 7.48360 7.51950 7.59616 7.79235 7.94441 8.08361 8.22321 9.18441 9.78721 10.45084 11.36648 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.022005 B = 0.001495 C = 0.001428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.118697 B =18723.160169 C =19596.815865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.007 4.007 3 Si 0.911 3.089 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.230 4.230 8 H 0.078 0.922 9 N -0.606 5.606 10 C 0.176 3.824 11 C -0.134 4.134 12 C -0.118 4.118 13 H 0.081 0.919 14 C 0.132 3.868 15 N -0.716 5.716 16 C 0.508 3.492 17 O -0.545 6.545 18 C 0.118 3.882 19 N -0.728 5.728 20 C 0.708 3.292 21 O -0.573 6.573 22 N -0.686 5.686 23 C 0.165 3.835 24 C -0.149 4.149 25 C -0.102 4.102 26 C -0.139 4.139 27 C -0.102 4.102 28 C -0.120 4.120 29 C 0.141 3.859 30 H 0.252 0.748 31 H 0.046 0.954 32 H 0.043 0.957 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.068 0.932 36 H 0.071 0.929 37 H 0.406 0.594 38 H 0.102 0.898 39 H 0.101 0.899 40 H 0.410 0.590 41 H 0.409 0.591 42 H 0.124 0.876 43 H 0.125 0.875 44 H 0.121 0.879 45 H 0.125 0.875 46 H 0.141 0.859 47 H 0.036 0.964 48 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.842 -28.959 1.034 30.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.204 4.204 3 Si 0.742 3.258 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.359 4.359 8 H 0.096 0.904 9 N -0.333 5.333 10 C 0.051 3.949 11 C -0.173 4.173 12 C -0.138 4.138 13 H 0.099 0.901 14 C 0.009 3.991 15 N -0.367 5.367 16 C 0.293 3.707 17 O -0.423 6.423 18 C -0.010 4.010 19 N -0.386 5.386 20 C 0.408 3.592 21 O -0.450 6.450 22 N -0.333 5.333 23 C 0.070 3.930 24 C -0.169 4.169 25 C -0.121 4.121 26 C -0.158 4.158 27 C -0.121 4.121 28 C -0.140 4.140 29 C 0.015 3.985 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.241 0.759 38 H 0.120 0.880 39 H 0.119 0.881 40 H 0.247 0.753 41 H 0.244 0.756 42 H 0.142 0.858 43 H 0.143 0.857 44 H 0.139 0.861 45 H 0.143 0.857 46 H 0.159 0.841 47 H 0.054 0.946 48 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 9.950 -28.649 1.199 30.351 hybrid contribution 0.017 0.946 -0.387 1.023 sum 9.967 -27.703 0.812 29.452 Atomic orbital electron populations 1.69969 1.04917 1.25071 1.56821 1.24817 0.95719 0.97702 1.02125 0.86112 0.78650 0.83557 0.77520 1.21613 1.21727 1.20628 1.19061 0.90812 0.82476 1.43516 0.90438 1.44541 1.01662 1.00586 1.86481 1.21154 0.84435 0.88208 1.01087 1.22849 0.95338 0.99198 0.99932 1.22627 0.98746 0.92128 1.00319 0.90083 1.21467 0.86847 0.92863 0.97908 1.45978 1.31406 1.15681 1.43635 1.20411 0.85663 0.82104 0.82557 1.90693 1.54760 1.63641 1.33194 1.20951 0.97501 0.83372 0.99220 1.44704 1.31470 1.16089 1.46353 1.15747 0.81559 0.80247 0.81641 1.90952 1.45945 1.73600 1.34479 1.42523 1.25821 1.15227 1.49765 1.17521 0.88749 0.93475 0.93275 1.20893 0.97528 1.00013 0.98494 1.20924 0.95673 0.98927 0.96581 1.21155 1.00740 1.00056 0.93835 1.21100 0.95588 0.95699 0.99714 1.21370 0.97862 0.99699 0.95117 1.21640 0.93925 0.85951 0.97004 0.93734 0.93604 0.93870 0.91968 0.92167 0.91418 0.91081 0.75895 0.87994 0.88109 0.75270 0.75578 0.85759 0.85736 0.86056 0.85739 0.84086 0.94580 0.96247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.76 10.34 55.49 0.57 -26.18 16 2 C -0.01 -0.20 5.48 -17.43 -0.10 -0.30 16 3 Si 0.91 21.90 29.56 -169.99 -5.02 16.87 16 4 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.23 -6.33 10.28 -15.06 -0.15 -6.48 16 8 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 9 N -0.61 -15.02 3.41 -169.82 -0.58 -15.60 16 10 C 0.18 4.13 5.37 -3.07 -0.02 4.12 16 11 C -0.13 -2.33 6.42 -24.90 -0.16 -2.49 16 12 C -0.12 -1.82 3.05 -88.47 -0.27 -2.09 16 13 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 14 C 0.13 1.70 5.13 -4.04 -0.02 1.68 16 15 N -0.72 -7.64 5.50 -60.29 -0.33 -7.97 16 16 C 0.51 5.54 7.90 -10.99 -0.09 5.46 16 17 O -0.54 -7.56 15.67 5.55 0.09 -7.47 16 18 C 0.12 1.04 6.15 -5.20 -0.03 1.01 16 19 N -0.73 -6.54 5.53 -66.42 -0.37 -6.91 16 20 C 0.71 7.34 8.41 -86.93 -0.73 6.61 16 21 O -0.57 -7.77 13.78 5.29 0.07 -7.69 16 22 N -0.69 -5.48 5.34 -14.23 -0.08 -5.56 16 23 C 0.16 1.49 6.30 -83.69 -0.53 0.96 16 24 C -0.15 -1.09 9.97 -39.40 -0.39 -1.48 16 25 C -0.10 -0.69 10.04 -39.61 -0.40 -1.09 16 26 C -0.14 -0.97 10.04 -39.55 -0.40 -1.37 16 27 C -0.10 -0.83 10.04 -39.61 -0.40 -1.23 16 28 C -0.12 -1.19 8.70 -39.40 -0.34 -1.53 16 29 C 0.14 2.70 6.67 -2.35 -0.02 2.68 16 30 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 31 H 0.05 1.21 7.37 -51.93 -0.38 0.82 16 32 H 0.04 1.12 7.52 -51.93 -0.39 0.73 16 33 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.06 0.99 8.04 -51.93 -0.42 0.57 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.07 1.00 7.96 -51.93 -0.41 0.58 16 37 H 0.41 3.60 8.47 -40.82 -0.35 3.26 16 38 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 39 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.41 3.35 7.46 -40.82 -0.30 3.04 16 41 H 0.41 2.02 8.84 -40.82 -0.36 1.66 16 42 H 0.12 0.65 8.06 -52.49 -0.42 0.23 16 43 H 0.12 0.55 8.06 -52.49 -0.42 0.13 16 44 H 0.12 0.59 8.06 -52.49 -0.42 0.17 16 45 H 0.12 0.79 8.06 -52.48 -0.42 0.37 16 46 H 0.14 1.59 6.22 -52.49 -0.33 1.27 16 47 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 48 H 0.02 0.39 7.90 -51.93 -0.41 -0.03 16 LS Contribution 397.41 15.07 5.99 5.99 Total: -1.00 -34.57 397.41 -10.82 -45.39 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: -7.13 Total: 4.68 kcal Atomic # 6 Polarization: 8.50 SS G_CDS: -4.04 Total: 4.46 kcal Atomic # 7 Polarization: -61.45 SS G_CDS: -0.78 Total: -62.23 kcal Atomic # 8 Polarization: -15.33 SS G_CDS: 0.16 Total: -15.17 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -34.57 -10.82 -45.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663608121.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.595 kcal (2) G-P(sol) polarization free energy of solvation -34.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds