Wall clock time and date at job start Wed Apr 1 2020 04:10:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 110.91403 * 2 1 4 4 C 1.54909 * 111.00118 * 236.09740 * 2 1 3 5 5 N 1.47419 * 104.83510 * 278.93416 * 4 2 1 6 6 C 1.36939 * 125.64946 * 155.90953 * 5 4 2 7 7 H 1.08000 * 119.99926 * 353.89680 * 6 5 4 8 8 C 1.38817 * 119.99995 * 173.90184 * 6 5 4 9 9 N 1.31609 * 120.00052 * 6.83281 * 8 6 5 10 10 Si 1.86803 * 119.99683 * 186.82750 * 8 6 5 11 11 H 1.48500 * 109.46897 * 94.98730 * 10 8 6 12 12 H 1.48500 * 109.46971 * 214.98613 * 10 8 6 13 13 H 1.48498 * 109.47392 * 334.98472 * 10 8 6 14 14 C 1.47023 * 108.70245 * 335.87398 * 5 4 2 15 15 C 1.54316 * 107.27234 * 1.05705 * 14 5 4 16 16 H 1.09001 * 110.87488 * 140.62257 * 15 14 5 17 17 N 1.46500 * 110.72275 * 263.83037 * 15 14 5 18 18 C 1.34778 * 119.99764 * 268.52001 * 17 15 14 19 19 O 1.21481 * 120.00147 * 0.02562 * 18 17 15 20 20 C 1.48452 * 119.99457 * 179.97438 * 18 17 15 21 21 C 1.39190 * 120.51265 * 180.02562 * 20 18 17 22 22 C 1.39604 * 118.20190 * 179.97438 * 21 20 18 23 23 O 1.35510 * 120.48578 * 180.02562 * 22 21 20 24 24 N 1.32659 * 119.02052 * 359.97438 * 22 21 20 25 25 C 1.31861 * 120.93924 * 0.02562 * 24 22 21 26 26 C 1.50701 * 119.00773 * 180.02562 * 25 24 22 27 27 C 1.52996 * 117.49977 * 8.74086 * 26 25 24 28 28 C 1.53007 * 117.49599 * 300.08014 * 26 25 24 29 29 N 1.31560 * 121.99187 * 0.02562 * 25 24 22 30 30 H 1.08998 * 109.47157 * 296.09341 * 1 2 3 31 31 H 1.08996 * 109.47316 * 56.09689 * 1 2 3 32 32 H 1.09003 * 109.47181 * 176.09604 * 1 2 3 33 33 H 1.09003 * 109.47240 * 183.90323 * 3 2 1 34 34 H 1.08998 * 109.47419 * 303.90532 * 3 2 1 35 35 H 1.09007 * 109.47252 * 63.90689 * 3 2 1 36 36 H 1.09003 * 110.36956 * 37.77404 * 4 2 1 37 37 H 1.09000 * 110.36336 * 160.09435 * 4 2 1 38 38 H 0.97004 * 120.00197 * 180.02562 * 9 8 6 39 39 H 1.09005 * 109.88230 * 241.64023 * 14 5 4 40 40 H 1.09008 * 109.88184 * 120.47737 * 14 5 4 41 41 H 0.96996 * 119.99919 * 88.51993 * 17 15 14 42 42 H 1.08000 * 120.89496 * 0.25119 * 21 20 18 43 43 H 0.96706 * 113.99576 * 90.00182 * 23 22 21 44 44 H 1.09004 * 115.55250 * 154.41698 * 26 25 24 45 45 H 1.09001 * 117.49693 * 359.97438 * 27 26 25 46 46 H 1.08997 * 117.50502 * 145.02558 * 27 26 25 47 47 H 1.08993 * 117.49709 * 214.97896 * 28 26 25 48 48 H 1.09000 * 117.49726 * 359.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0762 1.4292 0.0000 4 6 2.0852 -0.8067 -1.2003 5 7 2.0139 -2.2159 -0.7734 6 6 1.9460 -3.3000 -1.6073 7 1 1.8423 -3.1561 -2.6726 8 6 2.0104 -4.5838 -1.0832 9 7 2.0011 -4.7637 0.2205 10 14 2.1102 -6.0561 -2.2286 11 1 3.5319 -6.4425 -2.4153 12 1 1.3613 -7.1944 -1.6380 13 1 1.5168 -5.7020 -3.5430 14 6 2.0285 -2.2646 0.6960 15 6 2.0862 -0.8080 1.2022 16 1 1.4541 -0.6767 2.0805 17 7 3.4667 -0.4156 1.4962 18 6 3.9655 -0.5841 2.7369 19 8 3.2704 -1.0617 3.6113 20 6 5.3646 -0.1870 3.0345 21 6 5.8908 -0.3567 4.3119 22 6 7.2122 0.0328 4.5381 23 8 7.7713 -0.1121 5.7640 24 7 7.9126 0.5458 3.5351 25 6 7.3775 0.6903 2.3387 26 6 8.2131 1.2775 1.2305 27 6 9.7039 1.4856 1.5041 28 6 8.7629 2.6909 1.4334 29 7 6.1362 0.3373 2.0831 30 1 -0.3633 0.4520 0.9229 31 1 -0.3634 0.5732 -0.8529 32 1 -0.3634 -1.0253 -0.0700 33 1 3.1636 1.4026 -0.0700 34 1 1.6704 1.9732 -0.8529 35 1 1.7836 1.9300 0.9230 36 1 1.4671 -0.6462 -2.0837 37 1 3.1181 -0.5233 -1.4025 38 1 2.0465 -5.6608 0.5867 39 1 2.9064 -2.8117 1.0400 40 1 1.1218 -2.7480 1.0599 41 1 4.0218 -0.0346 0.7979 42 1 5.2944 -0.7823 5.1053 43 1 8.2101 -0.9635 5.8979 44 1 7.9220 0.9910 0.2199 45 1 10.0803 1.1981 2.4858 46 1 10.3937 1.3363 0.6735 47 1 8.8340 3.3339 0.5562 48 1 8.5199 3.1960 2.3682 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000974714607.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:10:35 Heat of formation + Delta-G solvation = 32.723198 kcal Electronic energy + Delta-G solvation = -31021.628079 eV Core-core repulsion = 26886.085851 eV Total energy + Delta-G solvation = -4135.542228 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.179 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.60382 -39.75746 -38.23208 -38.03933 -36.86851 -34.00300 -33.52261 -32.88501 -31.56101 -30.70844 -28.28570 -26.95579 -25.73338 -25.57376 -25.06765 -23.42344 -22.61210 -22.09855 -20.56102 -20.01744 -19.30380 -18.72366 -18.25234 -16.95315 -16.70944 -16.16836 -15.91335 -15.73433 -15.57815 -14.96693 -14.72994 -14.48765 -14.21001 -13.93716 -13.85879 -13.64925 -13.25148 -12.59661 -12.55862 -12.46263 -12.10978 -11.97829 -11.77263 -11.69609 -11.40993 -11.13976 -11.07714 -11.00515 -10.98132 -10.79079 -10.77479 -10.72045 -10.45757 -10.30479 -10.15866 -10.03696 -9.88898 -9.65185 -9.56620 -9.43784 -8.64753 -8.51122 -6.82545 -5.71225 -3.04485 0.31654 0.53302 2.66488 2.88013 3.18098 3.40203 3.43529 3.45354 3.47236 3.47702 3.86143 4.24373 4.49992 4.53809 4.62003 4.66238 4.73680 4.86164 4.92661 5.18361 5.27088 5.32566 5.34633 5.39420 5.51678 5.56718 5.63049 5.79771 5.82028 5.86295 5.93459 5.95202 6.02203 6.14644 6.17963 6.25592 6.36727 6.52851 6.57754 6.62061 6.65227 6.69293 6.92807 6.99538 7.49066 7.62022 7.67313 7.79920 7.86954 8.24333 8.37401 9.21096 9.82266 10.48061 11.40169 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.010476 B = 0.003132 C = 0.003014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2672.255677 B = 8938.441794 C = 9288.725315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.089 4.089 3 C -0.132 4.132 4 C 0.143 3.857 5 N -0.602 5.602 6 C -0.230 4.230 7 H 0.078 0.922 8 C -0.005 4.005 9 N -0.917 5.917 10 Si 0.909 3.091 11 H -0.290 1.290 12 H -0.292 1.292 13 H -0.281 1.281 14 C 0.175 3.825 15 C 0.119 3.881 16 H 0.093 0.907 17 N -0.679 5.679 18 C 0.566 3.434 19 O -0.524 6.524 20 C 0.162 3.838 21 C -0.193 4.193 22 C 0.365 3.635 23 O -0.472 6.472 24 N -0.528 5.528 25 C 0.374 3.626 26 C -0.103 4.103 27 C -0.152 4.152 28 C -0.154 4.154 29 N -0.494 5.494 30 H 0.048 0.952 31 H 0.053 0.947 32 H 0.069 0.931 33 H 0.053 0.947 34 H 0.055 0.945 35 H 0.052 0.948 36 H 0.042 0.958 37 H 0.018 0.982 38 H 0.252 0.748 39 H 0.051 0.949 40 H 0.053 0.947 41 H 0.408 0.592 42 H 0.167 0.833 43 H 0.410 0.590 44 H 0.136 0.864 45 H 0.109 0.891 46 H 0.102 0.898 47 H 0.105 0.895 48 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.231 14.709 5.290 19.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.091 4.091 3 C -0.190 4.190 4 C 0.017 3.983 5 N -0.329 5.329 6 C -0.358 4.358 7 H 0.096 0.904 8 C -0.202 4.202 9 N -0.564 5.564 10 Si 0.739 3.261 11 H -0.217 1.217 12 H -0.218 1.218 13 H -0.206 1.206 14 C 0.050 3.950 15 C 0.015 3.985 16 H 0.111 0.889 17 N -0.329 5.329 18 C 0.348 3.652 19 O -0.399 6.399 20 C 0.015 3.985 21 C -0.217 4.217 22 C 0.176 3.824 23 O -0.280 6.280 24 N -0.253 5.253 25 C 0.107 3.893 26 C -0.123 4.123 27 C -0.190 4.190 28 C -0.192 4.192 29 N -0.212 5.212 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.088 0.912 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.060 0.940 37 H 0.035 0.965 38 H 0.063 0.937 39 H 0.069 0.931 40 H 0.071 0.929 41 H 0.245 0.755 42 H 0.184 0.816 43 H 0.270 0.730 44 H 0.154 0.846 45 H 0.127 0.873 46 H 0.120 0.880 47 H 0.123 0.877 48 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 10.956 14.992 5.379 19.332 hybrid contribution 0.115 -1.615 -0.106 1.623 sum 11.071 13.376 5.273 18.147 Atomic orbital electron populations 1.21601 0.93161 1.02963 1.00602 1.22027 0.96397 0.94231 0.96416 1.21688 1.00538 0.95433 1.01335 1.21646 0.96720 0.85663 0.94281 1.44423 1.86929 0.99835 1.01682 1.19034 1.43557 0.83794 0.89421 0.90405 1.24816 1.02103 0.97359 0.95927 1.69963 1.56390 1.20628 1.09440 0.86150 0.77529 0.82692 0.79704 1.21740 1.21807 1.20639 1.21534 1.01684 0.88206 0.83614 1.22637 0.80418 0.97929 0.97510 0.88936 1.45865 1.14980 1.61494 1.10597 1.17613 0.84373 0.79553 0.83677 1.90807 1.58501 1.44189 1.46409 1.21750 0.95126 0.92299 0.89366 1.22989 0.96983 1.02450 0.99277 1.19277 0.88166 0.90391 0.84551 1.84719 1.74964 1.42754 1.25557 1.67531 1.40614 1.16640 1.00524 1.21851 0.87352 0.90855 0.89254 1.20702 0.94959 1.00634 0.96039 1.23048 0.90559 1.01085 1.04309 1.23012 1.02683 0.89747 1.03775 1.68099 1.05806 1.11854 1.35417 0.93300 0.92790 0.91169 0.92785 0.92554 0.92934 0.94015 0.96469 0.93720 0.93093 0.92920 0.75464 0.81567 0.72984 0.84617 0.87254 0.87955 0.87672 0.88579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.96 8.57 37.16 0.32 -1.65 16 2 C -0.09 -1.47 0.83 -152.36 -0.13 -1.60 16 3 C -0.13 -1.75 8.22 37.16 0.31 -1.44 16 4 C 0.14 2.82 6.12 -2.53 -0.02 2.80 16 5 N -0.60 -14.88 3.38 -170.07 -0.57 -15.45 16 6 C -0.23 -6.30 10.26 -15.06 -0.15 -6.45 16 7 H 0.08 2.06 7.84 -52.49 -0.41 1.65 16 8 C -0.01 -0.15 5.48 -17.43 -0.10 -0.25 16 9 N -0.92 -27.08 10.36 55.49 0.58 -26.51 16 10 Si 0.91 22.10 29.56 -169.99 -5.02 17.08 16 11 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 12 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 13 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 14 C 0.18 4.25 4.80 -3.07 -0.01 4.23 16 15 C 0.12 2.26 2.59 -66.10 -0.17 2.09 16 16 H 0.09 1.78 7.45 -51.93 -0.39 1.40 16 17 N -0.68 -11.81 4.45 -52.78 -0.23 -12.04 16 18 C 0.57 10.05 7.83 -12.05 -0.09 9.96 16 19 O -0.52 -10.63 16.06 5.38 0.09 -10.54 16 20 C 0.16 2.47 6.79 -82.69 -0.56 1.91 16 21 C -0.19 -2.56 9.68 -38.72 -0.37 -2.94 16 22 C 0.37 4.40 7.84 -16.69 -0.13 4.27 16 23 O -0.47 -4.43 13.58 -18.22 -0.25 -4.67 16 24 N -0.53 -6.65 9.35 -10.79 -0.10 -6.75 16 25 C 0.37 4.82 7.31 -157.34 -1.15 3.67 16 26 C -0.10 -1.03 6.23 -91.77 -0.57 -1.60 16 27 C -0.15 -1.23 10.01 -26.69 -0.27 -1.50 16 28 C -0.15 -1.24 10.24 -26.69 -0.27 -1.51 16 29 N -0.49 -7.12 9.59 -7.38 -0.07 -7.19 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.07 1.29 7.91 -51.93 -0.41 0.88 16 33 H 0.05 0.70 6.48 -51.93 -0.34 0.36 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.04 0.81 8.05 -51.93 -0.42 0.39 16 37 H 0.02 0.34 7.98 -51.93 -0.41 -0.07 16 38 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 39 H 0.05 1.42 7.27 -51.93 -0.38 1.05 16 40 H 0.05 1.43 7.55 -51.92 -0.39 1.04 16 41 H 0.41 6.64 6.50 -40.82 -0.27 6.37 16 42 H 0.17 2.07 7.73 -52.49 -0.41 1.66 16 43 H 0.41 1.73 9.06 45.56 0.41 2.14 16 44 H 0.14 1.27 8.14 -51.93 -0.42 0.84 16 45 H 0.11 0.98 7.53 -51.93 -0.39 0.59 16 46 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 47 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 48 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 LS Contribution 395.24 15.07 5.96 5.96 Total: -1.00 -33.29 395.24 -9.33 -42.62 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: -6.31 Total: 7.51 kcal Atomic # 6 Polarization: 13.37 SS G_CDS: -3.38 Total: 10.00 kcal Atomic # 7 Polarization: -67.54 SS G_CDS: -0.41 Total: -67.94 kcal Atomic # 8 Polarization: -15.06 SS G_CDS: -0.16 Total: -15.22 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -33.29 -9.33 -42.62 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974714607.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.343 kcal (2) G-P(sol) polarization free energy of solvation -33.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.620 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds