Wall clock time and date at job start Wed Apr 1 2020 04:23:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.31886 * 119.93432 * 2 1 4 4 N 1.28277 * 122.62500 * 180.02562 * 3 2 1 5 5 C 1.32487 * 122.22097 * 359.72139 * 4 3 2 6 6 O 1.35445 * 120.25794 * 180.29854 * 5 4 3 7 7 C 1.40452 * 119.49163 * 0.53133 * 5 4 3 8 8 C 1.47829 * 121.17757 * 179.76368 * 7 5 4 9 9 O 1.21549 * 119.99858 * 269.71632 * 8 7 5 10 10 N 1.34773 * 119.99753 * 89.72190 * 8 7 5 11 11 C 1.47350 * 125.70439 * 0.04217 * 10 8 7 12 12 C 1.54660 * 105.13082 * 204.80268 * 11 10 8 13 13 H 1.08999 * 113.79427 * 200.27717 * 12 11 10 14 14 C 1.54453 * 108.63910 * 71.45289 * 12 11 10 15 15 C 1.54111 * 104.72729 * 216.46035 * 14 12 11 16 16 C 1.55562 * 106.87850 * 23.43992 * 15 14 12 17 17 H 1.09004 * 110.77311 * 239.78653 * 16 15 14 18 18 N 1.46501 * 109.95434 * 117.91226 * 16 15 14 19 19 C 1.36939 * 119.99690 * 157.88487 * 18 16 15 20 20 H 1.07996 * 120.00441 * 0.02562 * 19 18 16 21 21 C 1.38809 * 119.99608 * 180.02562 * 19 18 16 22 22 N 1.31624 * 120.00181 * 180.02562 * 21 19 18 23 23 Si 1.86800 * 120.00069 * 0.02562 * 21 19 18 24 24 H 1.48499 * 109.47092 * 89.99965 * 23 21 19 25 25 H 1.48505 * 109.47432 * 209.99963 * 23 21 19 26 26 H 1.48496 * 109.47303 * 330.00010 * 23 21 19 27 27 C 1.53916 * 106.16092 * 359.06842 * 16 15 14 28 28 H 1.09004 * 112.92515 * 214.55688 * 27 16 15 29 29 C 1.47036 * 125.69825 * 179.97438 * 10 8 7 30 30 C 1.38487 * 119.93557 * 180.02562 * 2 1 3 31 31 C 1.50700 * 121.05141 * 359.95754 * 30 2 1 32 32 H 1.09005 * 109.46853 * 269.97884 * 1 2 3 33 33 H 1.09001 * 109.46989 * 29.97986 * 1 2 3 34 34 H 1.08996 * 109.47461 * 149.98217 * 1 2 3 35 35 H 0.96703 * 113.99998 * 270.24290 * 6 5 4 36 36 H 1.08995 * 110.31028 * 323.71538 * 11 10 8 37 37 H 1.08999 * 110.31268 * 85.78945 * 11 10 8 38 38 H 1.08994 * 110.38910 * 335.27051 * 14 12 11 39 39 H 1.09001 * 110.38413 * 97.53686 * 14 12 11 40 40 H 1.09002 * 110.01823 * 142.71248 * 15 14 12 41 41 H 1.08999 * 110.01990 * 264.05787 * 15 14 12 42 42 H 0.96998 * 119.99783 * 337.89152 * 18 16 15 43 43 H 0.96994 * 119.99903 * 179.97438 * 22 21 19 44 44 H 1.08997 * 109.82995 * 58.23245 * 29 10 8 45 45 H 1.09001 * 109.90011 * 297.30600 * 29 10 8 46 46 H 1.08999 * 109.46859 * 270.01540 * 31 30 2 47 47 H 1.08994 * 109.47738 * 30.02198 * 31 30 2 48 48 H 1.09003 * 109.46859 * 150.02300 * 31 30 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1650 1.1429 0.0000 4 7 3.4464 1.2031 -0.0005 5 6 4.2046 0.1167 0.0044 6 8 5.5546 0.2266 0.0098 7 6 3.5979 -1.1500 -0.0009 8 6 4.4079 -2.3866 -0.0010 9 8 4.7405 -2.8952 -1.0536 10 7 4.7775 -2.9500 1.1662 11 6 4.4450 -2.4430 2.5092 12 6 5.5551 -2.9934 3.4348 13 1 5.2806 -3.0090 4.4895 14 6 6.8708 -2.2454 3.1265 15 6 7.9727 -3.3122 3.2778 16 6 7.2939 -4.6958 3.0662 17 1 7.4093 -5.3223 3.9507 18 7 7.8735 -5.3636 1.8982 19 6 7.7839 -6.7244 1.7731 20 1 7.2856 -7.3051 2.5351 21 6 8.3335 -7.3572 0.6666 22 7 8.2470 -8.6650 0.5460 23 14 9.1959 -6.3527 -0.6512 24 1 10.6374 -6.2299 -0.3159 25 1 9.0493 -7.0296 -1.9649 26 1 8.5869 -5.0002 -0.7206 27 6 5.8022 -4.4079 2.8189 28 1 5.1475 -5.1755 3.2315 29 6 5.5789 -4.1741 1.3123 30 6 2.1980 -1.2001 -0.0005 31 6 1.4671 -2.5180 -0.0002 32 1 -0.3633 -0.0004 1.0277 33 1 -0.3633 0.8902 -0.5135 34 1 -0.3634 -0.8898 -0.5141 35 1 5.9500 0.2608 -0.8721 36 1 4.4535 -1.3531 2.5150 37 1 3.4697 -2.8148 2.8232 38 1 6.8566 -1.8559 2.1086 39 1 7.0233 -1.4356 3.8400 40 1 8.7458 -3.1594 2.5248 41 1 8.4084 -3.2597 4.2755 42 1 8.3207 -4.8420 1.2136 43 1 8.6307 -9.1071 -0.2274 44 1 6.5388 -4.0496 0.8113 45 1 5.0444 -5.0210 0.8818 46 1 1.2913 -2.8356 1.0276 47 1 0.5125 -2.4043 -0.5137 48 1 2.0691 -3.2674 -0.5141 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026328521.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:39 Heat of formation + Delta-G solvation = 10.000186 kcal Electronic energy + Delta-G solvation = -32027.617939 eV Core-core repulsion = 27891.090367 eV Total energy + Delta-G solvation = -4136.527572 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.179 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.82101 -40.39493 -38.56784 -38.00613 -35.31438 -35.19020 -33.41123 -32.90929 -31.22233 -29.65625 -28.86676 -28.77410 -28.28199 -25.88314 -24.93268 -23.19207 -22.93674 -22.66827 -20.07114 -19.77947 -19.24661 -18.93454 -18.32407 -17.79794 -17.50525 -16.34602 -15.92458 -15.85888 -15.16741 -14.86424 -14.72432 -14.56609 -14.06379 -13.83337 -13.66008 -13.58936 -13.44845 -13.32492 -13.06005 -12.85386 -12.71219 -12.55086 -12.48576 -12.37032 -12.30270 -11.95708 -11.50931 -11.29483 -10.88757 -10.85266 -10.69829 -10.58209 -10.44094 -10.37248 -10.31269 -10.15724 -10.02645 -9.77772 -9.61876 -9.61209 -8.95690 -8.56965 -7.32336 -5.81975 -3.18578 0.15376 0.36020 2.31887 2.74694 2.87517 3.16799 3.36923 3.40767 3.45881 3.70843 3.97536 4.02265 4.29148 4.42470 4.51903 4.56037 4.68340 4.81413 4.87622 4.91507 5.02457 5.15805 5.27295 5.30554 5.31747 5.32514 5.40794 5.41887 5.45266 5.48545 5.57136 5.59660 5.74822 5.78689 5.81938 5.88016 5.97274 6.06744 6.16698 6.27841 6.43088 6.48663 6.58743 6.63275 6.78283 6.97251 7.44924 7.93406 7.97295 8.27498 8.37261 9.14402 9.87376 10.05363 11.35947 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.014728 B = 0.003462 C = 0.003315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.666186 B = 8086.114520 C = 8443.813247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.059 3.941 3 N -0.208 5.208 4 N -0.254 5.254 5 C 0.287 3.713 6 O -0.467 6.467 7 C -0.133 4.133 8 C 0.581 3.419 9 O -0.523 6.523 10 N -0.597 5.597 11 C 0.104 3.896 12 C -0.103 4.103 13 H 0.104 0.896 14 C -0.114 4.114 15 C -0.131 4.131 16 C 0.187 3.813 17 H 0.065 0.935 18 N -0.743 5.743 19 C -0.248 4.248 20 H 0.091 0.909 21 C 0.010 3.990 22 N -0.931 5.931 23 Si 0.879 3.121 24 H -0.284 1.284 25 H -0.290 1.290 26 H -0.276 1.276 27 C -0.116 4.116 28 H 0.088 0.912 29 C 0.127 3.873 30 C -0.033 4.033 31 C -0.127 4.127 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.411 0.589 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.067 0.933 39 H 0.061 0.939 40 H 0.064 0.936 41 H 0.065 0.935 42 H 0.362 0.638 43 H 0.260 0.740 44 H 0.086 0.914 45 H 0.070 0.930 46 H 0.091 0.909 47 H 0.089 0.911 48 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.968 17.744 3.798 23.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.086 4.086 3 N -0.053 5.053 4 N -0.106 5.106 5 C 0.101 3.899 6 O -0.273 6.273 7 C -0.149 4.149 8 C 0.366 3.634 9 O -0.399 6.399 10 N -0.330 5.330 11 C -0.019 4.019 12 C -0.122 4.122 13 H 0.122 0.878 14 C -0.152 4.152 15 C -0.170 4.170 16 C 0.076 3.924 17 H 0.083 0.917 18 N -0.385 5.385 19 C -0.378 4.378 20 H 0.109 0.891 21 C -0.186 4.186 22 N -0.578 5.578 23 Si 0.709 3.291 24 H -0.211 1.211 25 H -0.217 1.217 26 H -0.202 1.202 27 C -0.138 4.138 28 H 0.106 0.894 29 C 0.006 3.994 30 C -0.044 4.044 31 C -0.184 4.184 32 H 0.106 0.894 33 H 0.104 0.896 34 H 0.103 0.897 35 H 0.271 0.729 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.086 0.914 39 H 0.080 0.920 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.196 0.804 43 H 0.070 0.930 44 H 0.104 0.896 45 H 0.088 0.912 46 H 0.109 0.891 47 H 0.108 0.892 48 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -14.793 18.813 3.758 24.226 hybrid contribution 0.937 -0.872 -1.562 2.019 sum -13.856 17.942 2.196 22.775 Atomic orbital electron populations 1.20752 0.86701 1.04470 1.04011 1.22762 0.99388 0.89220 0.97280 1.72833 1.00147 1.24310 1.08057 1.73044 0.99527 1.26347 1.11694 1.20844 0.86377 0.88075 0.94642 1.84708 1.12789 1.95143 1.34628 1.21434 0.94723 0.95514 1.03197 1.17206 0.79982 0.82795 0.83459 1.90884 1.55673 1.63054 1.30328 1.48529 1.52147 1.27492 1.04808 1.22291 0.98543 0.98702 0.82412 1.23190 0.94346 0.96152 0.98550 0.87805 1.22224 0.93953 0.97374 1.01631 1.22716 0.97835 0.94821 1.01579 1.21029 0.88749 0.91401 0.91171 0.91674 1.43002 1.67880 1.05192 1.22420 1.19039 1.31486 0.81296 1.05953 0.89075 1.24648 1.00560 0.95273 0.98105 1.69691 1.50220 1.07176 1.30676 0.86649 0.79994 0.79926 0.82557 1.21080 1.21662 1.20193 1.23575 1.01585 0.95245 0.93377 0.89377 1.22057 0.95834 0.84205 0.97328 1.21104 0.91562 0.97977 0.93777 1.21030 1.00972 0.92199 1.04150 0.89412 0.89596 0.89719 0.72920 0.91416 0.91554 0.91410 0.92016 0.91708 0.91654 0.80416 0.92998 0.89602 0.91196 0.89055 0.89214 0.89885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.57 9.81 36.00 0.35 -0.22 16 2 C 0.06 0.58 6.86 -82.48 -0.57 0.01 16 3 N -0.21 -2.58 11.40 33.56 0.38 -2.20 16 4 N -0.25 -3.48 11.52 30.73 0.35 -3.13 16 5 C 0.29 3.78 7.88 -16.44 -0.13 3.65 16 6 O -0.47 -5.72 13.09 -18.03 -0.24 -5.95 16 7 C -0.13 -1.75 4.57 -104.45 -0.48 -2.23 16 8 C 0.58 9.15 5.65 -12.34 -0.07 9.08 16 9 O -0.52 -10.32 17.44 5.32 0.09 -10.23 16 10 N -0.60 -8.86 2.84 -171.99 -0.49 -9.35 16 11 C 0.10 1.21 5.92 -2.70 -0.02 1.20 16 12 C -0.10 -1.21 4.28 -87.25 -0.37 -1.59 16 13 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 14 C -0.11 -1.45 5.85 -25.39 -0.15 -1.59 16 15 C -0.13 -1.89 6.60 -24.79 -0.16 -2.05 16 16 C 0.19 3.23 3.38 -66.09 -0.22 3.01 16 17 H 0.07 1.15 8.10 -51.93 -0.42 0.73 16 18 N -0.74 -16.39 3.36 -51.65 -0.17 -16.56 16 19 C -0.25 -6.62 10.44 -15.06 -0.16 -6.78 16 20 H 0.09 2.60 8.06 -52.49 -0.42 2.17 16 21 C 0.01 0.30 5.50 -17.43 -0.10 0.20 16 22 N -0.93 -28.68 13.97 55.49 0.78 -27.91 16 23 Si 0.88 22.18 27.74 -169.99 -4.71 17.46 16 24 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 25 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 26 H -0.28 -6.71 6.52 56.52 0.37 -6.34 16 27 C -0.12 -1.76 3.92 -87.83 -0.34 -2.10 16 28 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 29 C 0.13 2.22 5.39 -3.18 -0.02 2.20 16 30 C -0.03 -0.35 5.96 -103.84 -0.62 -0.97 16 31 C -0.13 -1.04 9.32 36.01 0.34 -0.70 16 32 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.08 0.33 6.05 -51.93 -0.31 0.01 16 35 H 0.41 3.44 9.06 45.56 0.41 3.86 16 36 H 0.07 0.79 7.63 -51.93 -0.40 0.39 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.07 0.98 7.29 -51.93 -0.38 0.60 16 39 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.06 1.01 7.62 -51.93 -0.40 0.61 16 41 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.36 8.15 4.68 -40.82 -0.19 7.96 16 43 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 44 H 0.09 1.76 6.13 -51.93 -0.32 1.45 16 45 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 46 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.09 0.49 6.07 -51.93 -0.32 0.18 16 48 H 0.08 0.88 7.25 -51.93 -0.38 0.50 16 LS Contribution 382.93 15.07 5.77 5.77 Total: -1.00 -34.77 382.93 -7.04 -41.81 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: -6.09 Total: 9.16 kcal Atomic # 6 Polarization: 3.85 SS G_CDS: -2.71 Total: 1.13 kcal Atomic # 7 Polarization: -60.00 SS G_CDS: 0.85 Total: -59.15 kcal Atomic # 8 Polarization: -16.04 SS G_CDS: -0.14 Total: -16.18 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -4.71 Total: 17.46 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.77 -7.04 -41.81 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026328521.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.810 kcal (2) G-P(sol) polarization free energy of solvation -34.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.810 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds