Wall clock time and date at job start Wed Apr 1 2020 03:31:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35565 * 125.82354 * 2 1 4 4 N 1.35398 * 107.16154 * 180.02562 * 3 2 1 5 5 H 0.97003 * 126.44063 * 179.97438 * 4 3 2 6 6 C 1.36663 * 107.12061 * 359.97438 * 4 3 2 7 7 C 1.47411 * 125.86734 * 180.02562 * 6 4 3 8 8 O 1.21617 * 119.99772 * 359.97438 * 7 6 4 9 9 N 1.34768 * 120.00501 * 180.02562 * 7 6 4 10 10 C 1.47136 * 125.60568 * 359.68655 * 9 7 6 11 11 C 1.54605 * 107.32259 * 178.91088 * 10 9 7 12 12 C 1.53707 * 102.86721 * 339.50620 * 11 10 9 13 13 C 1.53208 * 111.54621 * 153.75451 * 12 11 10 14 14 C 1.54799 * 101.39196 * 145.81483 * 13 12 11 15 15 N 1.46933 * 105.53923 * 335.83137 * 14 13 12 16 16 C 1.46494 * 124.37537 * 196.72071 * 15 14 13 17 17 C 1.53001 * 109.47332 * 270.00249 * 16 15 14 18 18 C 1.50699 * 109.47220 * 180.02562 * 17 16 15 19 19 H 1.07999 * 119.99905 * 359.97438 * 18 17 16 20 20 C 1.37886 * 119.99859 * 180.02562 * 18 17 16 21 21 N 1.31517 * 119.99733 * 180.02562 * 20 18 17 22 22 Si 1.86794 * 120.00121 * 359.97438 * 20 18 17 23 23 H 1.48499 * 109.47004 * 89.99946 * 22 20 18 24 24 H 1.48492 * 109.47290 * 210.00362 * 22 20 18 25 25 H 1.48507 * 109.47074 * 330.00370 * 22 20 18 26 26 C 1.34887 * 111.24095 * 16.74663 * 15 14 13 27 27 O 1.21289 * 125.21696 * 178.73187 * 26 15 14 28 28 C 1.47710 * 125.61022 * 179.97438 * 9 7 6 29 29 N 1.31611 * 108.27293 * 0.02562 * 6 4 3 30 30 H 1.09001 * 109.46695 * 90.00402 * 1 2 3 31 31 H 1.08994 * 109.46834 * 210.00004 * 1 2 3 32 32 H 1.09001 * 109.46901 * 330.00594 * 1 2 3 33 33 H 1.08002 * 126.41884 * 359.76361 * 3 2 1 34 34 H 1.08998 * 109.87865 * 298.49383 * 10 9 7 35 35 H 1.08998 * 109.87079 * 59.62920 * 10 9 7 36 36 H 1.09003 * 110.90331 * 221.06564 * 11 10 9 37 37 H 1.08998 * 110.67006 * 97.84159 * 11 10 9 38 38 H 1.09003 * 111.04010 * 263.84324 * 13 12 11 39 39 H 1.08996 * 111.04076 * 27.78442 * 13 12 11 40 40 H 1.09001 * 110.23293 * 216.81671 * 14 13 12 41 41 H 1.08999 * 110.30435 * 94.89055 * 14 13 12 42 42 H 1.08999 * 109.47612 * 30.00106 * 16 15 14 43 43 H 1.09000 * 109.47055 * 150.00382 * 16 15 14 44 44 H 1.09004 * 109.47258 * 300.00078 * 17 16 15 45 45 H 1.09004 * 109.47381 * 59.99843 * 17 16 15 46 46 H 0.97002 * 119.99917 * 180.02562 * 21 20 18 47 47 H 1.08995 * 110.39231 * 321.41651 * 28 9 7 48 48 H 1.09005 * 110.38925 * 83.69471 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3005 1.0992 0.0000 4 7 3.5833 0.6659 -0.0006 5 1 4.3789 1.2209 -0.0011 6 6 3.5465 -0.7002 -0.0003 7 6 4.7174 -1.5957 -0.0003 8 8 5.8403 -1.1285 -0.0009 9 7 4.5438 -2.9322 -0.0005 10 6 3.2471 -3.6275 0.0056 11 6 3.5386 -5.1455 -0.0253 12 6 4.9740 -5.2073 -0.5715 13 6 5.6991 -6.4742 -0.1062 14 6 6.5890 -6.7857 -1.3339 15 7 5.9175 -6.1530 -2.4774 16 6 6.1978 -6.4697 -3.8800 17 6 7.3100 -5.5551 -4.3970 18 6 7.5979 -5.8805 -5.8400 19 1 7.0433 -6.6618 -6.3384 20 6 8.5700 -5.1814 -6.5237 21 7 8.8209 -5.4650 -7.7832 22 14 9.5297 -3.8305 -5.6615 23 1 10.7421 -4.4106 -5.0298 24 1 9.9324 -2.8000 -6.6519 25 1 8.6776 -3.2072 -4.6172 26 6 5.0101 -5.2424 -2.0687 27 8 4.3284 -4.5569 -2.8011 28 6 5.6238 -3.9398 -0.0010 29 7 2.2861 -1.0791 -0.0002 30 1 -0.3633 -0.0001 -1.0277 31 1 -0.3633 -0.8899 0.5138 32 1 -0.3633 0.8901 0.5138 33 1 1.9711 2.1277 -0.0036 34 1 2.6941 -3.3725 0.9096 35 1 2.6711 -3.3451 -0.8756 36 1 2.8486 -5.6605 -0.6937 37 1 3.4889 -5.5674 0.9785 38 1 6.3063 -6.2756 0.7770 39 1 4.9928 -7.2831 0.0805 40 1 6.6579 -7.8628 -1.4860 41 1 7.5833 -6.3604 -1.1979 42 1 6.5151 -7.5093 -3.9614 43 1 5.2966 -6.3173 -4.4740 44 1 6.9928 -4.5154 -4.3157 45 1 8.2112 -5.7074 -3.8031 46 1 9.5050 -4.9735 -8.2641 47 1 6.4462 -3.6148 -0.6383 48 1 5.9783 -4.1171 1.0144 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272190071.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:31:47 Heat of formation + Delta-G solvation = -1.375359 kcal Electronic energy + Delta-G solvation = -31032.185545 eV Core-core repulsion = 26895.164693 eV Total energy + Delta-G solvation = -4137.020852 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.179 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.51460 -41.17145 -39.19514 -37.09263 -36.12607 -34.04903 -33.46804 -32.57620 -31.51987 -30.63598 -29.41250 -28.39374 -27.28756 -25.64329 -24.92298 -23.15033 -22.54012 -21.72822 -20.56044 -20.35883 -20.18730 -18.85210 -18.12046 -17.01601 -16.79721 -16.43196 -16.12638 -15.64709 -15.50978 -15.24465 -14.88122 -14.35151 -14.22506 -14.08515 -13.84419 -13.45067 -13.29640 -13.21132 -13.07510 -12.92366 -12.86145 -12.75040 -12.58098 -12.50014 -12.35699 -12.05877 -11.58994 -11.50556 -11.14588 -10.97524 -10.96709 -10.47076 -10.45023 -10.35798 -10.31301 -10.01528 -9.86758 -9.38063 -9.18993 -8.88973 -8.60047 -8.54898 -8.18093 -6.06180 -4.05029 1.14867 2.24362 2.33420 2.82015 3.15416 3.22438 3.30938 3.39246 3.40054 3.47349 3.91168 4.13063 4.26104 4.34725 4.45710 4.59818 4.70950 4.77027 4.87197 4.92631 5.11283 5.17134 5.28336 5.31026 5.40416 5.43898 5.46638 5.51684 5.58942 5.61464 5.68281 5.69007 5.73227 5.79294 5.88177 5.94501 6.03384 6.15807 6.29953 6.36023 6.58937 6.81186 6.86275 7.15624 7.23394 7.35056 7.51677 7.59794 7.75739 7.92325 8.46982 8.55102 8.96746 9.56173 11.06840 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.011172 B = 0.003148 C = 0.002775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2505.762466 B = 8892.865032 C =10088.343323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.004 4.004 3 C -0.025 4.025 4 N -0.524 5.524 5 H 0.430 0.570 6 C 0.156 3.844 7 C 0.621 3.379 8 O -0.544 6.544 9 N -0.589 5.589 10 C 0.116 3.884 11 C -0.108 4.108 12 C -0.116 4.116 13 C -0.116 4.116 14 C 0.099 3.901 15 N -0.616 5.616 16 C 0.138 3.862 17 C -0.025 4.025 18 C -0.521 4.521 19 H 0.074 0.926 20 C 0.071 3.929 21 N -0.901 5.901 22 Si 0.878 3.122 23 H -0.276 1.276 24 H -0.286 1.286 25 H -0.266 1.266 26 C 0.527 3.473 27 O -0.515 6.515 28 C 0.136 3.864 29 N -0.433 5.433 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.186 0.814 34 H 0.078 0.922 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.086 0.914 38 H 0.093 0.907 39 H 0.090 0.910 40 H 0.080 0.920 41 H 0.071 0.929 42 H 0.072 0.928 43 H 0.076 0.924 44 H 0.020 0.980 45 H 0.012 0.988 46 H 0.264 0.736 47 H 0.085 0.915 48 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.321 5.841 24.311 28.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.138 4.138 3 C -0.164 4.164 4 N -0.126 5.126 5 H 0.270 0.730 6 C -0.105 4.105 7 C 0.407 3.593 8 O -0.421 6.421 9 N -0.321 5.321 10 C -0.006 4.006 11 C -0.147 4.147 12 C -0.120 4.120 13 C -0.154 4.154 14 C -0.025 4.025 15 N -0.349 5.349 16 C 0.018 3.982 17 C -0.063 4.063 18 C -0.559 4.559 19 H 0.092 0.908 20 C -0.131 4.131 21 N -0.539 5.539 22 Si 0.705 3.295 23 H -0.202 1.202 24 H -0.212 1.212 25 H -0.190 1.190 26 C 0.312 3.688 27 O -0.390 6.390 28 C 0.013 3.987 29 N -0.156 5.156 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.203 0.797 34 H 0.097 0.903 35 H 0.105 0.895 36 H 0.107 0.893 37 H 0.104 0.896 38 H 0.111 0.889 39 H 0.108 0.892 40 H 0.099 0.901 41 H 0.090 0.910 42 H 0.091 0.909 43 H 0.094 0.906 44 H 0.038 0.962 45 H 0.031 0.969 46 H 0.074 0.926 47 H 0.103 0.897 48 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -14.175 5.697 23.653 28.158 hybrid contribution 1.399 1.900 0.139 2.364 sum -12.776 7.597 23.792 28.053 Atomic orbital electron populations 1.20053 0.86989 1.02822 1.02606 1.20958 0.97075 0.88049 1.07686 1.22729 0.82956 1.01062 1.09650 1.42871 1.09258 1.07488 1.52979 0.73031 1.22405 0.93635 0.82167 1.12287 1.15970 0.85578 0.80520 0.77218 1.90861 1.23865 1.75262 1.52077 1.47967 1.09239 1.03806 1.71042 1.22192 0.84432 0.90295 1.03707 1.22468 0.94142 0.96204 1.01843 1.21611 0.98216 0.96543 0.95628 1.22476 0.98915 0.95835 0.98184 1.22152 0.96341 0.98945 0.85044 1.48719 1.38590 1.39987 1.07616 1.21585 1.00305 0.99570 0.76733 1.19897 0.93497 0.95838 0.97078 1.20954 1.20371 1.20514 0.94087 0.90776 1.24963 0.96696 0.96760 0.94675 1.69905 1.33009 1.41713 1.09315 0.86804 0.80488 0.82367 0.79854 1.20215 1.21235 1.19041 1.19919 0.80013 0.79810 0.89035 1.90729 1.44507 1.43150 1.60626 1.21961 0.90384 0.85025 1.01324 1.70238 0.99063 1.30544 1.15794 0.91091 0.90911 0.91210 0.79738 0.90336 0.89474 0.89286 0.89570 0.88882 0.89191 0.90128 0.91027 0.90914 0.90553 0.96213 0.96936 0.92646 0.89653 0.89624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.47 10.42 36.01 0.38 -0.09 16 2 C 0.00 -0.04 7.07 -83.00 -0.59 -0.62 16 3 C -0.02 -0.21 11.91 -16.93 -0.20 -0.41 16 4 N -0.52 -5.49 6.14 -10.78 -0.07 -5.56 16 5 H 0.43 3.64 8.96 -40.82 -0.37 3.27 16 6 C 0.16 2.14 7.81 -154.53 -1.21 0.93 16 7 C 0.62 9.76 7.85 -12.53 -0.10 9.66 16 8 O -0.54 -9.79 17.37 5.26 0.09 -9.70 16 9 N -0.59 -8.36 3.34 -172.21 -0.57 -8.94 16 10 C 0.12 1.40 5.30 -2.85 -0.02 1.39 16 11 C -0.11 -1.08 5.79 -25.52 -0.15 -1.23 16 12 C -0.12 -1.40 0.68 -155.39 -0.10 -1.50 16 13 C -0.12 -0.99 6.26 -25.68 -0.16 -1.15 16 14 C 0.10 1.15 7.37 -2.86 -0.02 1.13 16 15 N -0.62 -10.43 2.95 -172.57 -0.51 -10.94 16 16 C 0.14 2.81 5.88 -4.04 -0.02 2.79 16 17 C -0.02 -0.62 4.37 -27.88 -0.12 -0.74 16 18 C -0.52 -15.15 9.66 -34.44 -0.33 -15.48 16 19 H 0.07 2.27 7.99 -52.49 -0.42 1.85 16 20 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 21 N -0.90 -28.27 13.96 55.43 0.77 -27.50 16 22 Si 0.88 22.81 27.47 -169.99 -4.67 18.14 16 23 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 24 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 25 H -0.27 -6.95 6.54 56.52 0.37 -6.58 16 26 C 0.53 9.22 6.77 -11.37 -0.08 9.15 16 27 O -0.52 -11.29 17.29 5.55 0.10 -11.19 16 28 C 0.14 1.75 5.89 -3.15 -0.02 1.73 16 29 N -0.43 -5.64 8.66 -7.50 -0.06 -5.71 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.19 0.81 8.06 -52.49 -0.42 0.38 16 34 H 0.08 0.84 7.75 -51.93 -0.40 0.44 16 35 H 0.09 1.27 7.62 -51.93 -0.40 0.88 16 36 H 0.09 0.92 8.00 -51.93 -0.42 0.51 16 37 H 0.09 0.59 8.04 -51.93 -0.42 0.17 16 38 H 0.09 0.57 7.63 -51.93 -0.40 0.17 16 39 H 0.09 0.61 7.96 -51.93 -0.41 0.19 16 40 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 43 H 0.08 1.67 7.96 -51.93 -0.41 1.26 16 44 H 0.02 0.53 7.20 -51.93 -0.37 0.16 16 45 H 0.01 0.30 7.57 -51.93 -0.39 -0.09 16 46 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 47 H 0.09 1.34 7.94 -51.93 -0.41 0.92 16 48 H 0.09 0.84 7.75 -51.93 -0.40 0.44 16 LS Contribution 394.04 15.07 5.94 5.94 Total: -1.00 -39.04 394.04 -9.17 -48.21 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: -7.35 Total: -0.32 kcal Atomic # 6 Polarization: 10.42 SS G_CDS: -2.84 Total: 7.58 kcal Atomic # 7 Polarization: -58.20 SS G_CDS: -0.44 Total: -58.64 kcal Atomic # 8 Polarization: -21.08 SS G_CDS: 0.19 Total: -20.89 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -4.67 Total: 18.14 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -39.04 -9.17 -48.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272190071.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.832 kcal (2) G-P(sol) polarization free energy of solvation -39.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds