Wall clock time and date at job start Wed Apr 1 2020 04:27:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 110.72972 * 2 1 4 4 C 1.54940 * 110.67068 * 236.90101 * 2 1 3 5 5 C 1.54595 * 102.92406 * 204.15455 * 4 2 1 6 6 C 1.53991 * 105.13843 * 21.95407 * 5 4 2 7 7 N 1.47906 * 107.06167 * 1.22932 * 6 5 4 8 8 C 1.46899 * 111.00084 * 214.15229 * 7 6 5 9 9 C 1.53008 * 109.46745 * 65.32596 * 8 7 6 10 10 N 1.46500 * 109.46581 * 183.20611 * 9 8 7 11 11 C 1.34782 * 119.99945 * 180.02562 * 10 9 8 12 12 O 1.21358 * 119.99822 * 359.97438 * 11 10 9 13 13 C 1.49359 * 120.00255 * 180.02562 * 11 10 9 14 14 O 1.21365 * 120.00206 * 359.97438 * 13 11 10 15 15 N 1.34782 * 120.00255 * 179.97438 * 13 11 10 16 16 C 1.39113 * 120.00167 * 185.57547 * 15 13 11 17 17 C 1.39704 * 119.57851 * 17.67306 * 16 15 13 18 18 C 1.38653 * 119.49542 * 179.97438 * 17 16 15 19 19 C 1.38349 * 118.66913 * 359.75014 * 18 17 16 20 20 C 1.40602 * 119.13298 * 0.49114 * 19 18 17 21 21 C 1.41339 * 119.78094 * 179.76908 * 20 19 18 22 22 H 1.07994 * 120.00201 * 8.89678 * 21 20 19 23 23 C 1.40028 * 119.99635 * 188.89306 * 21 20 19 24 24 N 1.30742 * 119.99905 * 195.00547 * 23 21 20 25 25 Si 1.86806 * 120.00047 * 15.00336 * 23 21 20 26 26 H 1.48496 * 109.47293 * 269.99923 * 25 23 21 27 27 H 1.48502 * 109.47123 * 30.00106 * 25 23 21 28 28 H 1.48503 * 109.47083 * 149.99646 * 25 23 21 29 29 N 1.31931 * 119.57749 * 197.64724 * 16 15 13 30 30 H 1.09003 * 109.47392 * 296.90571 * 1 2 3 31 31 H 1.09003 * 109.46963 * 56.90386 * 1 2 3 32 32 H 1.08998 * 109.47213 * 176.90408 * 1 2 3 33 33 H 1.09000 * 110.72165 * 85.79431 * 4 2 1 34 34 H 1.09002 * 110.87258 * 322.58771 * 4 2 1 35 35 H 1.09001 * 110.30886 * 263.04153 * 5 4 2 36 36 H 1.08990 * 110.30851 * 140.87147 * 5 4 2 37 37 H 1.08999 * 109.92166 * 241.87235 * 6 5 4 38 38 H 1.09003 * 109.91346 * 120.57904 * 6 5 4 39 39 H 1.09000 * 109.47111 * 305.33039 * 8 7 6 40 40 H 1.08997 * 109.47236 * 185.32552 * 8 7 6 41 41 H 1.09000 * 109.46622 * 63.21110 * 9 8 7 42 42 H 1.08992 * 109.47239 * 303.20343 * 9 8 7 43 43 H 0.97002 * 120.00424 * 0.02562 * 10 9 8 44 44 H 0.96997 * 119.99375 * 5.57262 * 15 13 11 45 45 H 1.08006 * 120.25431 * 0.02562 * 17 16 15 46 46 H 1.08000 * 120.66902 * 180.02562 * 18 17 16 47 47 H 1.07990 * 120.43196 * 180.24049 * 19 18 17 48 48 H 0.96996 * 120.00110 * 354.92362 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9158 1.0195 0.0000 4 6 2.0769 -0.7916 -1.2144 5 6 3.4853 -1.2198 -0.7422 6 6 3.4278 -1.1647 0.7957 7 7 2.0542 -0.7589 1.1643 8 6 2.0579 0.0720 2.3758 9 6 2.7787 1.3905 2.0877 10 7 2.8497 2.1865 3.3155 11 6 3.4451 3.3956 3.3012 12 8 3.9228 3.8246 2.2714 13 6 3.5181 4.2070 4.5531 14 8 3.0408 3.7778 5.5831 15 7 4.1140 5.4159 4.5389 16 6 4.2854 6.1208 5.7259 17 6 4.1900 5.4488 6.9470 18 6 4.3617 6.1530 8.1290 19 6 4.6293 7.5086 8.0611 20 6 4.7080 8.1285 6.8015 21 6 4.9759 9.5137 6.7164 22 1 5.2608 10.0640 7.6008 23 6 4.8721 10.1724 5.4851 24 7 5.3919 11.3625 5.3345 25 14 3.9908 9.3506 4.0576 26 1 4.9638 8.5539 3.2678 27 1 2.9277 8.4558 4.5812 28 1 3.3804 10.3889 3.1889 29 7 4.5365 7.4153 5.6841 30 1 -0.3634 0.4650 0.9164 31 1 -0.3633 0.5612 -0.8610 32 1 -0.3633 -1.0261 -0.0555 33 1 2.1431 -0.1514 -2.0940 34 1 1.4571 -1.6644 -1.4201 35 1 4.2374 -0.5260 -1.1177 36 1 3.7044 -2.2338 -1.0765 37 1 4.1440 -0.4322 1.1681 38 1 3.6485 -2.1481 1.2109 39 1 2.5740 -0.4566 3.1773 40 1 1.0312 0.2777 2.6784 41 1 2.2306 1.9453 1.3261 42 1 3.7873 1.1827 1.7305 43 1 2.4682 1.8435 4.1387 44 1 4.4233 5.7942 3.7011 45 1 3.9848 4.3886 6.9701 46 1 4.2923 5.6524 9.0835 47 1 4.7719 8.0839 8.9638 48 1 5.7844 11.8200 6.0944 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889964708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:13 Heat of formation + Delta-G solvation = -28.356766 kcal Electronic energy + Delta-G solvation = -29712.462097 eV Core-core repulsion = 25574.271243 eV Total energy + Delta-G solvation = -4138.190854 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.179 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.96809 -40.04652 -39.10467 -37.95588 -35.75902 -34.65125 -33.55922 -32.66274 -31.82844 -31.16715 -29.78237 -28.40918 -26.08139 -25.65762 -24.87723 -23.55592 -21.92184 -21.58890 -21.36483 -20.29853 -19.85479 -18.80649 -18.19880 -17.33871 -16.69597 -16.46513 -16.13584 -15.71487 -15.51664 -15.19582 -15.08219 -14.90356 -14.56900 -14.14985 -14.11418 -13.67727 -13.44826 -13.12982 -13.09767 -12.87080 -12.64504 -12.43946 -12.36448 -12.29591 -12.02970 -11.93041 -11.78399 -11.66091 -11.39655 -11.14297 -11.00813 -10.92269 -10.81411 -10.42335 -10.07442 -9.78980 -9.49694 -9.31486 -9.13867 -8.86485 -8.60885 -7.95535 -7.53890 -7.32218 -4.82228 1.22790 2.19035 2.46506 2.59791 3.25395 3.37610 3.48933 3.59710 3.67067 3.89222 4.15390 4.21565 4.31130 4.35377 4.41532 4.52440 4.54465 4.57291 4.79026 4.89361 4.98747 5.07198 5.20667 5.27540 5.33567 5.41932 5.46375 5.50417 5.54051 5.57050 5.67187 5.75616 5.77657 5.88680 5.89621 5.94763 6.31924 6.36475 6.42144 6.45227 6.52934 6.81387 6.99913 7.08599 7.35702 7.41215 7.49628 7.64917 7.67582 7.99870 8.08908 8.28537 8.58098 9.34463 9.93492 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.018757 B = 0.002175 C = 0.002035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.421216 B =12867.792382 C =13756.835171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.045 3.955 3 H 0.066 0.934 4 C -0.119 4.119 5 C -0.133 4.133 6 C 0.026 3.974 7 N -0.502 5.502 8 C 0.033 3.967 9 C 0.077 3.923 10 N -0.698 5.698 11 C 0.513 3.487 12 O -0.514 6.514 13 C 0.508 3.492 14 O -0.494 6.494 15 N -0.621 5.621 16 C 0.377 3.623 17 C -0.311 4.311 18 C -0.036 4.036 19 C -0.271 4.271 20 C 0.273 3.727 21 C -0.477 4.477 22 H 0.085 0.915 23 C 0.049 3.951 24 N -0.800 5.800 25 Si 1.139 2.861 26 H -0.285 1.285 27 H -0.279 1.279 28 H -0.325 1.325 29 N -0.590 5.590 30 H 0.056 0.944 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.068 0.932 36 H 0.072 0.928 37 H 0.053 0.947 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.089 0.911 41 H 0.078 0.922 42 H 0.075 0.925 43 H 0.415 0.585 44 H 0.419 0.581 45 H 0.140 0.860 46 H 0.108 0.892 47 H 0.107 0.893 48 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.541 -23.661 -10.366 26.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.062 4.062 3 H 0.083 0.917 4 C -0.157 4.157 5 C -0.171 4.171 6 C -0.102 4.102 7 N -0.226 5.226 8 C -0.096 4.096 9 C -0.047 4.047 10 N -0.353 5.353 11 C 0.293 3.707 12 O -0.389 6.389 13 C 0.289 3.711 14 O -0.369 6.369 15 N -0.267 5.267 16 C 0.146 3.854 17 C -0.335 4.335 18 C -0.061 4.061 19 C -0.294 4.294 20 C 0.149 3.851 21 C -0.509 4.509 22 H 0.103 0.897 23 C -0.173 4.173 24 N -0.422 5.422 25 Si 0.972 3.028 26 H -0.212 1.212 27 H -0.207 1.207 28 H -0.257 1.257 29 N -0.315 5.315 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.091 0.909 34 H 0.094 0.906 35 H 0.087 0.913 36 H 0.091 0.909 37 H 0.071 0.929 38 H 0.100 0.900 39 H 0.105 0.895 40 H 0.107 0.893 41 H 0.096 0.904 42 H 0.093 0.907 43 H 0.252 0.748 44 H 0.256 0.744 45 H 0.157 0.843 46 H 0.126 0.874 47 H 0.125 0.875 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -7.092 -23.454 -12.568 27.538 hybrid contribution 1.079 0.387 2.466 2.719 sum -6.013 -23.067 -10.103 25.890 Atomic orbital electron populations 1.21670 0.93449 1.02491 1.01780 1.23008 0.96414 0.96618 0.90181 0.91666 1.22535 0.95972 1.00165 0.97040 1.22398 0.97603 1.02235 0.94866 1.22978 0.89847 1.01504 0.95849 1.65029 1.18896 1.35879 1.02756 1.22532 1.01820 0.90809 0.94478 1.22289 1.02152 0.92976 0.87320 1.45563 1.58312 1.17596 1.13868 1.20086 0.79271 0.82444 0.88891 1.90789 1.45048 1.70299 1.32741 1.19876 0.79802 0.82494 0.88944 1.90682 1.43897 1.70373 1.31908 1.42914 1.55749 1.17017 1.11033 1.18018 0.94888 0.88647 0.83832 1.21535 1.19702 1.01598 0.90707 1.20915 0.94542 0.93883 0.96726 1.21662 1.14752 0.95161 0.97782 1.18195 0.87847 0.93172 0.85899 1.20692 1.40086 0.92148 0.97935 0.89664 1.27668 0.92301 0.94692 1.02683 1.70612 1.23314 1.13414 1.34817 0.82189 0.76954 0.71841 0.71807 1.21228 1.20674 1.25696 1.66197 1.28386 1.04783 1.32136 0.92529 0.92127 0.91794 0.90950 0.90607 0.91310 0.90879 0.92922 0.90023 0.89514 0.89277 0.90381 0.90734 0.74843 0.74355 0.84280 0.87420 0.87500 0.90372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.85 9.51 37.16 0.35 -0.49 16 2 C 0.05 0.31 2.68 -65.78 -0.18 0.13 16 3 H 0.07 0.50 5.44 -51.93 -0.28 0.21 16 4 C -0.12 -0.71 6.50 -24.87 -0.16 -0.87 16 5 C -0.13 -0.78 6.93 -25.38 -0.18 -0.95 16 6 C 0.03 0.17 6.47 -2.75 -0.02 0.15 16 7 N -0.50 -3.55 5.23 -222.62 -1.16 -4.71 16 8 C 0.03 0.22 5.43 -3.82 -0.02 0.20 16 9 C 0.08 0.67 4.87 -4.04 -0.02 0.65 16 10 N -0.70 -7.24 5.55 -60.76 -0.34 -7.58 16 11 C 0.51 7.29 7.89 -11.63 -0.09 7.20 16 12 O -0.51 -8.39 16.48 5.49 0.09 -8.29 16 13 C 0.51 8.59 7.73 -11.63 -0.09 8.50 16 14 O -0.49 -8.81 13.22 5.48 0.07 -8.73 16 15 N -0.62 -12.12 5.40 -11.83 -0.06 -12.18 16 16 C 0.38 8.66 7.52 -155.10 -1.17 7.49 16 17 C -0.31 -6.80 8.85 -38.88 -0.34 -7.14 16 18 C -0.04 -0.78 10.15 -39.39 -0.40 -1.18 16 19 C -0.27 -6.34 9.83 -38.65 -0.38 -6.72 16 20 C 0.27 7.11 6.27 -85.00 -0.53 6.57 16 21 C -0.48 -12.84 9.52 -37.73 -0.36 -13.20 16 22 H 0.09 2.28 8.06 -52.49 -0.42 1.85 16 23 C 0.05 1.32 5.51 -17.34 -0.10 1.23 16 24 N -0.80 -21.59 13.65 55.55 0.76 -20.83 16 25 Si 1.14 27.89 25.95 -169.99 -4.41 23.48 16 26 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 27 H -0.28 -6.96 6.49 56.52 0.37 -6.59 16 28 H -0.32 -7.80 7.11 56.52 0.40 -7.40 16 29 N -0.59 -15.00 5.00 -10.28 -0.05 -15.05 16 30 H 0.06 0.36 7.58 -51.93 -0.39 -0.03 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.40 8.11 -51.93 -0.42 -0.02 16 33 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.08 0.44 8.03 -51.93 -0.42 0.02 16 35 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.05 0.36 5.82 -51.93 -0.30 0.06 16 38 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.09 0.53 8.13 -51.93 -0.42 0.11 16 40 H 0.09 0.56 7.62 -51.93 -0.40 0.17 16 41 H 0.08 0.73 6.13 -51.93 -0.32 0.41 16 42 H 0.07 0.69 6.18 -51.93 -0.32 0.37 16 43 H 0.41 3.68 7.94 -40.82 -0.32 3.35 16 44 H 0.42 7.83 8.31 -40.82 -0.34 7.49 16 45 H 0.14 2.88 5.25 -52.63 -0.28 2.61 16 46 H 0.11 1.92 8.06 -52.49 -0.42 1.50 16 47 H 0.11 2.32 8.06 -52.49 -0.42 1.89 16 48 H 0.28 7.33 8.73 -40.82 -0.36 6.97 16 LS Contribution 384.96 15.07 5.80 5.80 Total: -1.00 -30.33 384.96 -9.76 -40.10 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: -6.78 Total: 6.45 kcal Atomic # 6 Polarization: 5.24 SS G_CDS: -3.68 Total: 1.57 kcal Atomic # 7 Polarization: -59.50 SS G_CDS: -0.86 Total: -60.36 kcal Atomic # 8 Polarization: -17.19 SS G_CDS: 0.16 Total: -17.03 kcal Atomic # 14 Polarization: 27.89 SS G_CDS: -4.41 Total: 23.48 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -30.33 -9.76 -40.10 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889964708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.740 kcal (2) G-P(sol) polarization free energy of solvation -30.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds