Wall clock time and date at job start Wed Apr 1 2020 04:27:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 110.72972 * 2 1 4 4 C 1.54940 * 110.67068 * 236.90101 * 2 1 3 5 5 C 1.54595 * 102.92406 * 204.15455 * 4 2 1 6 6 C 1.53991 * 105.13843 * 21.95407 * 5 4 2 7 7 N 1.47906 * 107.06167 * 1.22932 * 6 5 4 8 8 C 1.46899 * 111.00084 * 214.15229 * 7 6 5 9 9 C 1.53008 * 109.46745 * 65.32596 * 8 7 6 10 10 N 1.46500 * 109.46581 * 183.20611 * 9 8 7 11 11 C 1.34782 * 119.99945 * 180.02562 * 10 9 8 12 12 O 1.21358 * 119.99822 * 359.97438 * 11 10 9 13 13 C 1.49359 * 120.00255 * 180.02562 * 11 10 9 14 14 O 1.21365 * 120.00206 * 359.97438 * 13 11 10 15 15 N 1.34782 * 120.00255 * 179.97438 * 13 11 10 16 16 C 1.39113 * 120.00167 * 185.57547 * 15 13 11 17 17 C 1.39704 * 119.57851 * 17.67306 * 16 15 13 18 18 C 1.38653 * 119.49542 * 179.97438 * 17 16 15 19 19 C 1.38349 * 118.66913 * 359.75014 * 18 17 16 20 20 C 1.40602 * 119.13298 * 0.49114 * 19 18 17 21 21 C 1.41339 * 119.78094 * 179.76908 * 20 19 18 22 22 H 1.07994 * 120.00201 * 8.89678 * 21 20 19 23 23 C 1.40028 * 119.99635 * 188.89306 * 21 20 19 24 24 N 1.30742 * 119.99905 * 195.00547 * 23 21 20 25 25 Si 1.86806 * 120.00047 * 15.00336 * 23 21 20 26 26 H 1.48496 * 109.47293 * 269.99923 * 25 23 21 27 27 H 1.48502 * 109.47123 * 30.00106 * 25 23 21 28 28 H 1.48503 * 109.47083 * 149.99646 * 25 23 21 29 29 N 1.31931 * 119.57749 * 197.64724 * 16 15 13 30 30 H 1.09003 * 109.47392 * 296.90571 * 1 2 3 31 31 H 1.09003 * 109.46963 * 56.90386 * 1 2 3 32 32 H 1.08998 * 109.47213 * 176.90408 * 1 2 3 33 33 H 1.09000 * 110.72165 * 85.79431 * 4 2 1 34 34 H 1.09002 * 110.87258 * 322.58771 * 4 2 1 35 35 H 1.09001 * 110.30886 * 263.04153 * 5 4 2 36 36 H 1.08990 * 110.30851 * 140.87147 * 5 4 2 37 37 H 1.08999 * 109.92166 * 241.87235 * 6 5 4 38 38 H 1.09003 * 109.91346 * 120.57904 * 6 5 4 39 39 H 1.09000 * 109.47111 * 305.33039 * 8 7 6 40 40 H 1.08997 * 109.47236 * 185.32552 * 8 7 6 41 41 H 1.09000 * 109.46622 * 63.21110 * 9 8 7 42 42 H 1.08992 * 109.47239 * 303.20343 * 9 8 7 43 43 H 0.97002 * 120.00424 * 0.02562 * 10 9 8 44 44 H 0.96997 * 119.99375 * 5.57262 * 15 13 11 45 45 H 1.08006 * 120.25431 * 0.02562 * 17 16 15 46 46 H 1.08000 * 120.66902 * 180.02562 * 18 17 16 47 47 H 1.07990 * 120.43196 * 180.24049 * 19 18 17 48 48 H 0.96996 * 120.00110 * 354.92362 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9158 1.0195 0.0000 4 6 2.0769 -0.7916 -1.2144 5 6 3.4853 -1.2198 -0.7422 6 6 3.4278 -1.1647 0.7957 7 7 2.0542 -0.7589 1.1643 8 6 2.0579 0.0720 2.3758 9 6 2.7787 1.3905 2.0877 10 7 2.8497 2.1865 3.3155 11 6 3.4451 3.3956 3.3012 12 8 3.9228 3.8246 2.2714 13 6 3.5181 4.2070 4.5531 14 8 3.0408 3.7778 5.5831 15 7 4.1140 5.4159 4.5389 16 6 4.2854 6.1208 5.7259 17 6 4.1900 5.4488 6.9470 18 6 4.3617 6.1530 8.1290 19 6 4.6293 7.5086 8.0611 20 6 4.7080 8.1285 6.8015 21 6 4.9759 9.5137 6.7164 22 1 5.2608 10.0640 7.6008 23 6 4.8721 10.1724 5.4851 24 7 5.3919 11.3625 5.3345 25 14 3.9908 9.3506 4.0576 26 1 4.9638 8.5539 3.2678 27 1 2.9277 8.4558 4.5812 28 1 3.3804 10.3889 3.1889 29 7 4.5365 7.4153 5.6841 30 1 -0.3634 0.4650 0.9164 31 1 -0.3633 0.5612 -0.8610 32 1 -0.3633 -1.0261 -0.0555 33 1 2.1431 -0.1514 -2.0940 34 1 1.4571 -1.6644 -1.4201 35 1 4.2374 -0.5260 -1.1177 36 1 3.7044 -2.2338 -1.0765 37 1 4.1440 -0.4322 1.1681 38 1 3.6485 -2.1481 1.2109 39 1 2.5740 -0.4566 3.1773 40 1 1.0312 0.2777 2.6784 41 1 2.2306 1.9453 1.3261 42 1 3.7873 1.1827 1.7305 43 1 2.4682 1.8435 4.1387 44 1 4.4233 5.7942 3.7011 45 1 3.9848 4.3886 6.9701 46 1 4.2923 5.6524 9.0835 47 1 4.7719 8.0839 8.9638 48 1 5.7844 11.8200 6.0944 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889964708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:12 Heat of formation + Delta-G solvation = -49.468234 kcal Electronic energy + Delta-G solvation = -29713.377559 eV Core-core repulsion = 25574.271243 eV Total energy + Delta-G solvation = -4139.106316 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.179 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.30098 -40.94625 -40.30686 -39.46523 -36.87995 -36.10603 -35.38197 -33.34630 -33.00089 -32.31470 -31.55048 -29.24091 -27.48037 -26.59470 -26.09216 -24.35127 -23.68166 -23.06324 -21.88405 -21.49846 -20.84512 -20.33307 -19.74553 -18.52195 -17.96359 -17.58296 -17.25538 -16.96456 -16.68053 -16.29162 -16.15644 -16.02143 -15.63632 -15.52504 -15.32151 -15.07437 -14.83687 -14.39414 -14.28055 -14.07461 -13.76981 -13.69510 -13.44284 -13.36115 -13.03873 -12.87880 -12.85468 -12.43375 -12.35647 -12.24447 -12.13104 -11.94077 -11.91698 -11.65140 -11.61717 -11.42197 -11.11053 -10.75962 -10.44164 -10.40542 -9.87144 -9.43330 -9.36392 -9.30088 -6.82432 -0.12138 0.67829 0.81243 0.99159 1.51242 1.62331 1.92104 1.95092 2.31215 2.36022 2.59812 2.94062 3.19636 3.53492 3.65012 3.70857 3.76391 3.94616 4.02398 4.05685 4.27661 4.30267 4.31128 4.46520 4.56601 4.58190 4.66092 4.66759 4.67728 4.75809 4.82565 4.92116 4.95716 5.01838 5.06119 5.10209 5.20910 5.23012 5.31637 5.32444 5.38255 5.40152 5.60229 5.67861 5.86673 5.90578 5.92280 6.00406 6.16014 6.34789 6.49522 6.64020 6.71824 7.46713 7.92010 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.018757 B = 0.002175 C = 0.002035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.421216 B =12867.792382 C =13756.835171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.042 3.958 3 H 0.057 0.943 4 C -0.118 4.118 5 C -0.133 4.133 6 C 0.023 3.977 7 N -0.506 5.506 8 C 0.039 3.961 9 C 0.080 3.920 10 N -0.675 5.675 11 C 0.521 3.479 12 O -0.537 6.537 13 C 0.513 3.487 14 O -0.500 6.500 15 N -0.628 5.628 16 C 0.364 3.636 17 C -0.302 4.302 18 C -0.027 4.027 19 C -0.284 4.284 20 C 0.257 3.743 21 C -0.509 4.509 22 H 0.073 0.927 23 C 0.023 3.977 24 N -0.824 5.824 25 Si 1.169 2.831 26 H -0.280 1.280 27 H -0.288 1.288 28 H -0.320 1.320 29 N -0.609 5.609 30 H 0.053 0.947 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.067 0.933 36 H 0.081 0.919 37 H 0.048 0.952 38 H 0.086 0.914 39 H 0.097 0.903 40 H 0.096 0.904 41 H 0.074 0.926 42 H 0.072 0.928 43 H 0.425 0.575 44 H 0.421 0.579 45 H 0.157 0.843 46 H 0.150 0.850 47 H 0.119 0.881 48 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.468 -26.838 -10.467 29.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.066 4.066 3 H 0.075 0.925 4 C -0.156 4.156 5 C -0.171 4.171 6 C -0.104 4.104 7 N -0.229 5.229 8 C -0.090 4.090 9 C -0.044 4.044 10 N -0.330 5.330 11 C 0.300 3.700 12 O -0.414 6.414 13 C 0.295 3.705 14 O -0.374 6.374 15 N -0.275 5.275 16 C 0.133 3.867 17 C -0.326 4.326 18 C -0.051 4.051 19 C -0.307 4.307 20 C 0.132 3.868 21 C -0.541 4.541 22 H 0.091 0.909 23 C -0.195 4.195 24 N -0.447 5.447 25 Si 1.000 3.000 26 H -0.207 1.207 27 H -0.216 1.216 28 H -0.252 1.252 29 N -0.334 5.334 30 H 0.072 0.928 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.085 0.915 36 H 0.099 0.901 37 H 0.067 0.933 38 H 0.105 0.895 39 H 0.115 0.885 40 H 0.115 0.885 41 H 0.092 0.908 42 H 0.090 0.910 43 H 0.264 0.736 44 H 0.259 0.741 45 H 0.174 0.826 46 H 0.168 0.832 47 H 0.137 0.863 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -8.039 -26.694 -12.669 30.622 hybrid contribution 1.301 1.079 2.562 3.070 sum -6.738 -25.615 -10.107 28.349 Atomic orbital electron populations 1.21650 0.93031 1.02530 1.01908 1.23043 0.96765 0.96225 0.90535 0.92550 1.22544 0.95980 1.00224 0.96884 1.22410 0.97519 1.02730 0.94438 1.23023 0.89463 1.01595 0.96341 1.65067 1.19179 1.35746 1.02935 1.22537 1.02063 0.89644 0.94736 1.22422 1.02267 0.93473 0.86223 1.45520 1.56292 1.16098 1.15068 1.19564 0.79938 0.83172 0.87335 1.90797 1.46588 1.71021 1.32966 1.20348 0.78535 0.81682 0.89917 1.90650 1.43865 1.70297 1.32612 1.42984 1.56563 1.17765 1.10158 1.18379 0.94503 0.88235 0.85592 1.21940 1.17674 1.02446 0.90548 1.21370 0.92301 0.92999 0.98453 1.21857 1.15116 0.96424 0.97262 1.18402 0.87985 0.93126 0.87307 1.20674 1.42655 0.93062 0.97725 0.90854 1.28289 0.92370 0.94885 1.03955 1.70626 1.25133 1.14039 1.34885 0.81778 0.76242 0.71272 0.70687 1.20703 1.21610 1.25238 1.66133 1.28834 1.06075 1.32319 0.92795 0.91594 0.91806 0.90507 0.90357 0.91454 0.90054 0.93350 0.89537 0.88476 0.88543 0.90787 0.91034 0.73649 0.74085 0.82567 0.83191 0.86310 0.90528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.44 9.51 71.98 0.68 -0.75 16 2 C 0.04 0.50 2.68 45.26 0.12 0.62 16 3 H 0.06 0.78 5.44 -2.39 -0.01 0.76 16 4 C -0.12 -1.21 6.50 31.80 0.21 -1.00 16 5 C -0.13 -1.33 6.93 31.47 0.22 -1.11 16 6 C 0.02 0.26 6.47 86.44 0.56 0.82 16 7 N -0.51 -6.10 5.23 -858.23 -4.49 -10.59 16 8 C 0.04 0.43 5.43 86.31 0.47 0.90 16 9 C 0.08 1.21 4.87 86.38 0.42 1.63 16 10 N -0.68 -12.31 5.55 -464.49 -2.58 -14.89 16 11 C 0.52 13.77 7.89 87.24 0.69 14.46 16 12 O -0.54 -16.75 16.48 -3.27 -0.05 -16.81 16 13 C 0.51 16.29 7.73 87.24 0.67 16.97 16 14 O -0.50 -16.39 13.22 -3.29 -0.04 -16.44 16 15 N -0.63 -23.66 5.40 -309.70 -1.67 -25.33 16 16 C 0.36 16.18 7.52 133.30 1.00 17.19 16 17 C -0.30 -12.37 8.85 22.72 0.20 -12.17 16 18 C -0.03 -1.07 10.15 22.40 0.23 -0.85 16 19 C -0.28 -12.95 9.83 22.87 0.22 -12.72 16 20 C 0.26 13.41 6.27 40.20 0.25 13.66 16 21 C -0.51 -28.13 9.52 23.47 0.22 -27.91 16 22 H 0.07 4.08 8.06 -2.91 -0.02 4.06 16 23 C 0.02 1.28 5.51 85.29 0.47 1.75 16 24 N -0.82 -45.67 13.65 21.84 0.30 -45.37 16 25 Si 1.17 57.31 25.95 68.60 1.78 59.09 16 26 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 27 H -0.29 -14.36 6.49 99.48 0.65 -13.71 16 28 H -0.32 -15.22 7.11 99.48 0.71 -14.51 16 29 N -0.61 -30.70 5.00 -186.43 -0.93 -31.63 16 30 H 0.05 0.60 7.58 -2.39 -0.02 0.58 16 31 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.06 0.69 8.11 -2.39 -0.02 0.67 16 33 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.08 0.76 8.03 -2.39 -0.02 0.75 16 35 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 37 H 0.05 0.58 5.82 -2.39 -0.01 0.57 16 38 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.10 0.89 8.13 -2.39 -0.02 0.87 16 40 H 0.10 0.94 7.62 -2.39 -0.02 0.93 16 41 H 0.07 1.25 6.13 -2.39 -0.01 1.23 16 42 H 0.07 1.19 6.18 -2.39 -0.01 1.17 16 43 H 0.42 6.22 7.94 -92.71 -0.74 5.48 16 44 H 0.42 15.42 8.31 -92.71 -0.77 14.65 16 45 H 0.16 5.90 5.25 -5.23 -0.03 5.87 16 46 H 0.15 4.64 8.06 -2.91 -0.02 4.61 16 47 H 0.12 5.02 8.06 -2.92 -0.02 5.00 16 48 H 0.28 15.16 8.73 -92.71 -0.81 14.35 16 Total: -1.00 -64.59 384.96 -1.65 -66.24 By element: Atomic # 1 Polarization: 24.83 SS G_CDS: -0.60 Total: 24.23 kcal Atomic # 6 Polarization: 4.85 SS G_CDS: 6.64 Total: 11.49 kcal Atomic # 7 Polarization: -118.44 SS G_CDS: -9.37 Total: -127.81 kcal Atomic # 8 Polarization: -33.14 SS G_CDS: -0.10 Total: -33.24 kcal Atomic # 14 Polarization: 57.31 SS G_CDS: 1.78 Total: 59.09 kcal Total: -64.59 -1.65 -66.24 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889964708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.768 kcal (2) G-P(sol) polarization free energy of solvation -64.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds