Wall clock time and date at job start Wed Apr 1 2020 03:41:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47263 * 2 1 4 4 O 1.42906 * 109.46721 * 120.00030 * 2 1 3 5 5 C 1.35482 * 116.99490 * 149.99964 * 4 2 1 6 6 C 1.39637 * 119.97460 * 179.72396 * 5 4 2 7 7 N 1.31529 * 120.03847 * 179.71096 * 6 5 4 8 8 C 1.33211 * 119.99304 * 0.56161 * 7 6 5 9 9 C 1.47892 * 120.02828 * 179.73022 * 8 7 6 10 10 O 1.21555 * 120.00244 * 188.21016 * 9 8 7 11 11 N 1.34775 * 120.00150 * 8.20914 * 9 8 7 12 12 C 1.47161 * 120.70799 * 6.85954 * 11 9 8 13 13 C 1.54320 * 107.45473 * 131.78345 * 12 11 9 14 14 H 1.08995 * 112.19220 * 182.87221 * 13 12 11 15 15 C 1.54548 * 108.97525 * 307.72354 * 13 12 11 16 16 C 1.54277 * 104.85065 * 88.73649 * 15 13 12 17 17 C 1.54551 * 104.84833 * 359.97438 * 16 15 13 18 18 H 1.09004 * 112.17892 * 147.02198 * 17 16 15 19 19 C 1.47163 * 120.71145 * 187.13665 * 11 9 8 20 20 N 1.48305 * 104.90606 * 24.96134 * 17 16 15 21 21 C 1.36936 * 128.07475 * 138.83164 * 20 17 16 22 22 H 1.08005 * 120.00322 * 359.97438 * 21 20 17 23 23 C 1.38818 * 120.00062 * 179.97438 * 21 20 17 24 24 N 1.31618 * 119.99615 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99936 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.47176 * 359.97438 * 25 23 21 27 27 H 1.48498 * 109.47265 * 120.00042 * 25 23 21 28 28 H 1.48503 * 109.46720 * 239.99825 * 25 23 21 29 29 C 1.39395 * 119.94815 * 359.71700 * 8 7 6 30 30 N 1.32078 * 119.96219 * 359.97438 * 29 8 7 31 31 H 1.09006 * 109.47191 * 60.00268 * 1 2 3 32 32 H 1.08999 * 109.47186 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47224 * 300.00304 * 1 2 3 34 34 H 1.08998 * 109.47224 * 239.99696 * 2 1 3 35 35 H 1.09001 * 109.46814 * 59.99973 * 3 2 1 36 36 H 1.08996 * 109.47451 * 179.97438 * 3 2 1 37 37 H 1.08999 * 109.47462 * 299.99908 * 3 2 1 38 38 H 1.08004 * 119.97695 * 359.97438 * 6 5 4 39 39 H 1.09001 * 109.75313 * 252.41219 * 12 11 9 40 40 H 1.09002 * 109.75006 * 13.15197 * 12 11 9 41 41 H 1.08998 * 110.36571 * 329.88819 * 15 13 12 42 42 H 1.08995 * 110.36176 * 207.57559 * 15 13 12 43 43 H 1.09008 * 110.36279 * 241.16347 * 16 15 13 44 44 H 1.08994 * 110.45946 * 118.88964 * 16 15 13 45 45 H 1.09000 * 109.75124 * 346.85515 * 19 11 9 46 46 H 1.09000 * 109.74954 * 107.54235 * 19 11 9 47 47 H 0.97002 * 119.99239 * 180.02562 * 24 23 21 48 48 H 1.08002 * 120.02017 * 180.02562 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 3.1969 -1.3121 1.0654 6 6 3.7237 -1.9856 2.1694 7 7 4.8767 -2.6106 2.0707 8 6 5.5480 -2.5919 0.9203 9 6 6.8475 -3.2894 0.8102 10 8 7.5298 -3.1499 -0.1861 11 7 7.2753 -4.0797 1.8146 12 6 6.4006 -4.3800 2.9593 13 6 6.4457 -5.9054 3.1886 14 1 5.7813 -6.2206 3.9931 15 6 6.1307 -6.6234 1.8567 16 6 7.4987 -6.7860 1.1621 17 6 8.5159 -6.1510 2.1371 18 1 9.4831 -6.6528 2.1071 19 6 8.6293 -4.6560 1.7929 20 7 7.8761 -6.2464 3.4716 21 6 8.4589 -6.5765 4.6659 22 1 9.5132 -6.8074 4.7068 23 6 7.6948 -6.6145 5.8242 24 7 6.4101 -6.3327 5.7744 25 14 8.4898 -7.0656 7.4533 26 1 9.9343 -7.3367 7.2409 27 1 8.3321 -5.9404 8.4094 28 1 7.8347 -8.2790 8.0045 29 6 5.0246 -1.9146 -0.1799 30 7 3.8636 -1.2927 -0.0804 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3633 0.5139 0.8899 34 1 1.8933 -0.5139 -0.8899 35 1 1.6767 1.9562 0.8900 36 1 3.1300 1.4425 0.0005 37 1 1.6767 1.9563 -0.8900 38 1 3.1818 -1.9968 3.1037 39 1 6.7514 -3.8444 3.8414 40 1 5.3776 -4.0822 2.7292 41 1 5.4650 -6.0141 1.2456 42 1 5.6843 -7.5991 2.0482 43 1 7.5056 -6.2564 0.2094 44 1 7.7259 -7.8412 1.0105 45 1 9.0638 -4.5385 0.8002 46 1 9.2551 -4.1538 2.5307 47 1 5.8762 -6.3589 6.5839 48 1 5.5677 -1.8990 -1.1133 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029308161.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:41:25 Heat of formation + Delta-G solvation = 36.550017 kcal Electronic energy + Delta-G solvation = -31539.858174 eV Core-core repulsion = 27404.481890 eV Total energy + Delta-G solvation = -4135.376285 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.179 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.59640 -39.95400 -38.87920 -37.60418 -34.67933 -33.65047 -33.48641 -32.35761 -30.98696 -30.22238 -29.19118 -27.63852 -26.50601 -25.28312 -24.72224 -23.66100 -23.43728 -21.78714 -20.46913 -19.55729 -18.90087 -18.73573 -18.08720 -17.26335 -16.25888 -16.01952 -15.74152 -15.49598 -15.07057 -14.94951 -14.71891 -14.46918 -14.17928 -13.77295 -13.67899 -13.35611 -12.99704 -12.89622 -12.78342 -12.68267 -12.66167 -12.38608 -12.19911 -11.79790 -11.64579 -11.56167 -11.31656 -11.13726 -11.01399 -10.92721 -10.79420 -10.61783 -10.30286 -10.05397 -9.99853 -9.62368 -9.56050 -9.45645 -9.12351 -8.87711 -8.62858 -8.04825 -6.85583 -5.70705 -3.13885 0.45101 0.89678 2.55227 2.91329 3.37184 3.39424 3.43488 3.45245 3.77785 3.82027 4.09294 4.31757 4.43530 4.50878 4.59788 4.85346 4.87786 5.06131 5.18888 5.22796 5.31577 5.38377 5.38898 5.43092 5.45697 5.71133 5.73974 5.76422 5.81837 5.83479 5.88881 6.02840 6.10982 6.24644 6.39016 6.43064 6.60348 6.66673 6.76746 6.81036 6.82093 6.95167 6.97270 7.11880 7.31288 7.52401 7.53963 7.72574 8.02639 8.26447 8.53316 9.11167 9.73331 10.46406 11.32843 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.015366 B = 0.002994 C = 0.002681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1821.722891 B = 9349.170829 C =10440.411645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.077 3.923 3 C -0.169 4.169 4 O -0.290 6.290 5 C 0.291 3.709 6 C 0.039 3.961 7 N -0.356 5.356 8 C -0.008 4.008 9 C 0.565 3.435 10 O -0.559 6.559 11 N -0.565 5.565 12 C 0.085 3.915 13 C 0.136 3.864 14 H 0.157 0.843 15 C -0.129 4.129 16 C -0.126 4.126 17 C 0.135 3.865 18 H 0.076 0.924 19 C 0.099 3.901 20 N -0.589 5.589 21 C -0.212 4.212 22 H 0.080 0.920 23 C -0.011 4.011 24 N -0.920 5.920 25 Si 0.916 3.084 26 H -0.281 1.281 27 H -0.291 1.291 28 H -0.291 1.291 29 C 0.151 3.849 30 N -0.503 5.503 31 H 0.078 0.922 32 H 0.065 0.935 33 H 0.067 0.933 34 H 0.091 0.909 35 H 0.063 0.937 36 H 0.061 0.939 37 H 0.072 0.928 38 H 0.183 0.817 39 H 0.068 0.932 40 H 0.113 0.887 41 H 0.044 0.956 42 H 0.054 0.946 43 H 0.054 0.946 44 H 0.053 0.947 45 H 0.077 0.923 46 H 0.064 0.936 47 H 0.254 0.746 48 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.094 11.126 -11.180 18.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.021 3.979 3 C -0.227 4.227 4 O -0.195 6.195 5 C 0.108 3.892 6 C -0.127 4.127 7 N -0.073 5.073 8 C -0.146 4.146 9 C 0.351 3.649 10 O -0.439 6.439 11 N -0.294 5.294 12 C -0.038 4.038 13 C 0.029 3.971 14 H 0.173 0.827 15 C -0.169 4.169 16 C -0.165 4.165 17 C 0.026 3.974 18 H 0.094 0.906 19 C -0.025 4.025 20 N -0.310 5.310 21 C -0.340 4.340 22 H 0.098 0.902 23 C -0.206 4.206 24 N -0.569 5.569 25 Si 0.747 3.253 26 H -0.206 1.206 27 H -0.218 1.218 28 H -0.218 1.218 29 C -0.008 4.008 30 N -0.232 5.232 31 H 0.096 0.904 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.109 0.891 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.091 0.909 38 H 0.200 0.800 39 H 0.086 0.914 40 H 0.130 0.870 41 H 0.063 0.937 42 H 0.072 0.928 43 H 0.073 0.927 44 H 0.072 0.928 45 H 0.096 0.904 46 H 0.083 0.917 47 H 0.065 0.935 48 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -9.911 11.160 -11.172 18.644 hybrid contribution 0.397 -0.059 0.694 0.802 sum -9.515 11.102 -10.478 17.988 Atomic orbital electron populations 1.21912 0.92486 1.03238 1.03142 1.22470 0.94783 0.92883 0.87773 1.22224 1.02209 0.95420 1.02816 1.86315 1.30759 1.63579 1.38885 1.21291 0.86662 0.89997 0.91272 1.23298 0.94213 0.96517 0.98664 1.68981 1.04660 1.10459 1.23242 1.22155 0.98130 1.02693 0.91639 1.17523 0.83926 0.79870 0.83630 1.90731 1.56921 1.65728 1.30568 1.48182 1.15621 1.44656 1.20969 1.23574 0.94676 0.99197 0.86357 1.23241 0.88843 0.89585 0.95430 0.82703 1.22538 0.95891 1.00014 0.98420 1.22507 0.96623 0.99612 0.97747 1.21908 0.96142 0.91922 0.87410 0.90553 1.22469 0.82330 0.96477 1.01223 1.45599 1.04511 1.79344 1.01534 1.19134 0.93278 1.38291 0.83291 0.90241 1.24700 0.95850 1.02347 0.97742 1.69362 1.05084 1.55705 1.26705 0.85969 0.78143 0.77626 0.83560 1.20649 1.21809 1.21846 1.23451 0.89199 0.88661 0.99475 1.68144 1.09114 1.21622 1.24365 0.90364 0.91629 0.91437 0.89101 0.91777 0.91955 0.90892 0.79997 0.91360 0.86998 0.93719 0.92753 0.92735 0.92783 0.90442 0.91747 0.93546 0.79935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.56 37.16 0.36 -0.61 16 2 C 0.08 0.67 3.11 -26.73 -0.08 0.59 16 3 C -0.17 -1.31 9.53 37.16 0.35 -0.95 16 4 O -0.29 -3.17 9.77 -18.14 -0.18 -3.35 16 5 C 0.29 3.59 7.47 -16.70 -0.12 3.47 16 6 C 0.04 0.50 11.18 -17.16 -0.19 0.31 16 7 N -0.36 -5.50 6.27 -9.49 -0.06 -5.56 16 8 C -0.01 -0.12 6.57 -82.89 -0.54 -0.67 16 9 C 0.57 10.38 7.66 -12.31 -0.09 10.29 16 10 O -0.56 -10.99 15.83 5.32 0.08 -10.90 16 11 N -0.57 -10.94 2.24 -172.39 -0.39 -11.33 16 12 C 0.09 1.74 5.31 -2.99 -0.02 1.73 16 13 C 0.14 3.05 3.60 -64.62 -0.23 2.81 16 14 H 0.16 3.97 5.26 -51.93 -0.27 3.70 16 15 C -0.13 -2.56 6.20 -25.25 -0.16 -2.72 16 16 C -0.13 -2.36 6.20 -25.25 -0.16 -2.52 16 17 C 0.14 2.74 4.27 -65.69 -0.28 2.45 16 18 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 19 C 0.10 1.92 5.91 -3.25 -0.02 1.90 16 20 N -0.59 -14.09 2.85 -151.27 -0.43 -14.52 16 21 C -0.21 -5.56 10.44 -15.06 -0.16 -5.71 16 22 H 0.08 2.03 7.83 -52.48 -0.41 1.62 16 23 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 24 N -0.92 -24.97 10.22 55.49 0.57 -24.40 16 25 Si 0.92 21.31 29.55 -169.99 -5.02 16.29 16 26 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 27 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 28 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 29 C 0.15 2.05 10.76 -17.02 -0.18 1.87 16 30 N -0.50 -6.40 8.80 -12.76 -0.11 -6.52 16 31 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.09 0.85 6.99 -51.93 -0.36 0.49 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.18 1.87 8.06 -52.48 -0.42 1.45 16 39 H 0.07 1.58 8.14 -51.93 -0.42 1.16 16 40 H 0.11 2.14 4.34 -73.36 -0.32 1.82 16 41 H 0.04 0.84 7.89 -51.93 -0.41 0.43 16 42 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 43 H 0.05 0.99 7.84 -51.92 -0.41 0.58 16 44 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 45 H 0.08 1.42 7.08 -51.93 -0.37 1.05 16 46 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 47 H 0.25 6.72 8.31 -40.82 -0.34 6.38 16 48 H 0.18 2.22 7.66 -52.49 -0.40 1.82 16 LS Contribution 380.95 15.07 5.74 5.74 Total: -1.00 -29.29 380.95 -8.58 -37.88 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: -7.16 Total: 4.84 kcal Atomic # 6 Polarization: 13.46 SS G_CDS: -1.63 Total: 11.83 kcal Atomic # 7 Polarization: -61.90 SS G_CDS: -0.42 Total: -62.32 kcal Atomic # 8 Polarization: -14.16 SS G_CDS: -0.09 Total: -14.25 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -29.29 -8.58 -37.88 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029308161.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.429 kcal (2) G-P(sol) polarization free energy of solvation -29.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.879 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds