Wall clock time and date at job start Wed Apr 1 2020 03:41:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47263 * 2 1 4 4 O 1.42906 * 109.46721 * 120.00030 * 2 1 3 5 5 C 1.35482 * 116.99490 * 149.99964 * 4 2 1 6 6 C 1.39637 * 119.97460 * 179.72396 * 5 4 2 7 7 N 1.31529 * 120.03847 * 179.71096 * 6 5 4 8 8 C 1.33211 * 119.99304 * 0.56161 * 7 6 5 9 9 C 1.47892 * 120.02828 * 179.73022 * 8 7 6 10 10 O 1.21555 * 120.00244 * 188.21016 * 9 8 7 11 11 N 1.34775 * 120.00150 * 8.20914 * 9 8 7 12 12 C 1.47161 * 120.70799 * 6.85954 * 11 9 8 13 13 C 1.54320 * 107.45473 * 131.78345 * 12 11 9 14 14 H 1.08995 * 112.19220 * 182.87221 * 13 12 11 15 15 C 1.54548 * 108.97525 * 307.72354 * 13 12 11 16 16 C 1.54277 * 104.85065 * 88.73649 * 15 13 12 17 17 C 1.54551 * 104.84833 * 359.97438 * 16 15 13 18 18 H 1.09004 * 112.17892 * 147.02198 * 17 16 15 19 19 C 1.47163 * 120.71145 * 187.13665 * 11 9 8 20 20 N 1.48305 * 104.90606 * 24.96134 * 17 16 15 21 21 C 1.36936 * 128.07475 * 138.83164 * 20 17 16 22 22 H 1.08005 * 120.00322 * 359.97438 * 21 20 17 23 23 C 1.38818 * 120.00062 * 179.97438 * 21 20 17 24 24 N 1.31618 * 119.99615 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99936 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.47176 * 359.97438 * 25 23 21 27 27 H 1.48498 * 109.47265 * 120.00042 * 25 23 21 28 28 H 1.48503 * 109.46720 * 239.99825 * 25 23 21 29 29 C 1.39395 * 119.94815 * 359.71700 * 8 7 6 30 30 N 1.32078 * 119.96219 * 359.97438 * 29 8 7 31 31 H 1.09006 * 109.47191 * 60.00268 * 1 2 3 32 32 H 1.08999 * 109.47186 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47224 * 300.00304 * 1 2 3 34 34 H 1.08998 * 109.47224 * 239.99696 * 2 1 3 35 35 H 1.09001 * 109.46814 * 59.99973 * 3 2 1 36 36 H 1.08996 * 109.47451 * 179.97438 * 3 2 1 37 37 H 1.08999 * 109.47462 * 299.99908 * 3 2 1 38 38 H 1.08004 * 119.97695 * 359.97438 * 6 5 4 39 39 H 1.09001 * 109.75313 * 252.41219 * 12 11 9 40 40 H 1.09002 * 109.75006 * 13.15197 * 12 11 9 41 41 H 1.08998 * 110.36571 * 329.88819 * 15 13 12 42 42 H 1.08995 * 110.36176 * 207.57559 * 15 13 12 43 43 H 1.09008 * 110.36279 * 241.16347 * 16 15 13 44 44 H 1.08994 * 110.45946 * 118.88964 * 16 15 13 45 45 H 1.09000 * 109.75124 * 346.85515 * 19 11 9 46 46 H 1.09000 * 109.74954 * 107.54235 * 19 11 9 47 47 H 0.97002 * 119.99239 * 180.02562 * 24 23 21 48 48 H 1.08002 * 120.02017 * 180.02562 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 3.1969 -1.3121 1.0654 6 6 3.7237 -1.9856 2.1694 7 7 4.8767 -2.6106 2.0707 8 6 5.5480 -2.5919 0.9203 9 6 6.8475 -3.2894 0.8102 10 8 7.5298 -3.1499 -0.1861 11 7 7.2753 -4.0797 1.8146 12 6 6.4006 -4.3800 2.9593 13 6 6.4457 -5.9054 3.1886 14 1 5.7813 -6.2206 3.9931 15 6 6.1307 -6.6234 1.8567 16 6 7.4987 -6.7860 1.1621 17 6 8.5159 -6.1510 2.1371 18 1 9.4831 -6.6528 2.1071 19 6 8.6293 -4.6560 1.7929 20 7 7.8761 -6.2464 3.4716 21 6 8.4589 -6.5765 4.6659 22 1 9.5132 -6.8074 4.7068 23 6 7.6948 -6.6145 5.8242 24 7 6.4101 -6.3327 5.7744 25 14 8.4898 -7.0656 7.4533 26 1 9.9343 -7.3367 7.2409 27 1 8.3321 -5.9404 8.4094 28 1 7.8347 -8.2790 8.0045 29 6 5.0246 -1.9146 -0.1799 30 7 3.8636 -1.2927 -0.0804 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3633 0.5139 0.8899 34 1 1.8933 -0.5139 -0.8899 35 1 1.6767 1.9562 0.8900 36 1 3.1300 1.4425 0.0005 37 1 1.6767 1.9563 -0.8900 38 1 3.1818 -1.9968 3.1037 39 1 6.7514 -3.8444 3.8414 40 1 5.3776 -4.0822 2.7292 41 1 5.4650 -6.0141 1.2456 42 1 5.6843 -7.5991 2.0482 43 1 7.5056 -6.2564 0.2094 44 1 7.7259 -7.8412 1.0105 45 1 9.0638 -4.5385 0.8002 46 1 9.2551 -4.1538 2.5307 47 1 5.8762 -6.3589 6.5839 48 1 5.5677 -1.8990 -1.1133 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001029308161.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:41:24 Heat of formation + Delta-G solvation = 19.317809 kcal Electronic energy + Delta-G solvation = -31540.605419 eV Core-core repulsion = 27404.481890 eV Total energy + Delta-G solvation = -4136.123529 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.179 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.70509 -41.35819 -39.95546 -39.09130 -35.90778 -35.05961 -34.39285 -34.09847 -32.35641 -31.59192 -31.00078 -28.22614 -28.02477 -26.45116 -26.09631 -25.31122 -24.92646 -22.62605 -21.84393 -21.21700 -20.48064 -19.72965 -19.33446 -18.70612 -17.57190 -17.32908 -17.22129 -16.84882 -16.51401 -16.03831 -15.89062 -15.71178 -15.48202 -15.29297 -14.85486 -14.62719 -14.47905 -14.43740 -14.04397 -13.68750 -13.53592 -13.42618 -13.29271 -13.21496 -12.97987 -12.88402 -12.78451 -12.56891 -12.55097 -12.27640 -11.94606 -11.90480 -11.81617 -11.73851 -11.41143 -11.28722 -11.18707 -11.12694 -10.91165 -10.07095 -9.94289 -9.64075 -8.71610 -7.68484 -5.13542 -0.66495 -0.16468 1.50930 1.52262 1.60729 1.61590 1.64095 2.01018 2.52927 2.59107 2.82861 2.91501 3.28103 3.40619 3.52311 3.63013 3.85508 3.96508 4.02064 4.12397 4.14668 4.22105 4.22840 4.37409 4.44628 4.51547 4.55126 4.66344 4.71113 4.79838 4.81524 4.85347 4.87477 4.99549 5.01473 5.06868 5.13854 5.20732 5.23262 5.25799 5.36262 5.52986 5.55868 5.66443 5.86810 5.90718 5.94590 6.37414 6.40558 6.55272 7.06076 7.13973 7.78396 8.54879 9.32287 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.015366 B = 0.002994 C = 0.002681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1821.722891 B = 9349.170829 C =10440.411645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.068 3.932 3 C -0.166 4.166 4 O -0.290 6.290 5 C 0.304 3.696 6 C 0.042 3.958 7 N -0.380 5.380 8 C -0.033 4.033 9 C 0.569 3.431 10 O -0.572 6.572 11 N -0.573 5.573 12 C 0.105 3.895 13 C 0.129 3.871 14 H 0.125 0.875 15 C -0.121 4.121 16 C -0.115 4.115 17 C 0.130 3.870 18 H 0.085 0.915 19 C 0.105 3.895 20 N -0.609 5.609 21 C -0.222 4.222 22 H 0.080 0.920 23 C -0.061 4.061 24 N -0.939 5.939 25 Si 0.974 3.026 26 H -0.272 1.272 27 H -0.296 1.296 28 H -0.295 1.295 29 C 0.164 3.836 30 N -0.502 5.502 31 H 0.099 0.901 32 H 0.062 0.938 33 H 0.070 0.930 34 H 0.085 0.915 35 H 0.067 0.933 36 H 0.044 0.956 37 H 0.093 0.907 38 H 0.206 0.794 39 H 0.032 0.968 40 H 0.130 0.870 41 H 0.056 0.944 42 H 0.051 0.949 43 H 0.065 0.935 44 H 0.063 0.937 45 H 0.090 0.910 46 H 0.050 0.950 47 H 0.248 0.752 48 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.243 12.120 -12.636 20.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.013 3.987 3 C -0.223 4.223 4 O -0.195 6.195 5 C 0.119 3.881 6 C -0.125 4.125 7 N -0.097 5.097 8 C -0.169 4.169 9 C 0.356 3.644 10 O -0.453 6.453 11 N -0.302 5.302 12 C -0.018 4.018 13 C 0.023 3.977 14 H 0.142 0.858 15 C -0.160 4.160 16 C -0.154 4.154 17 C 0.023 3.977 18 H 0.103 0.897 19 C -0.019 4.019 20 N -0.331 5.331 21 C -0.350 4.350 22 H 0.098 0.902 23 C -0.254 4.254 24 N -0.589 5.589 25 Si 0.804 3.196 26 H -0.197 1.197 27 H -0.224 1.224 28 H -0.222 1.222 29 C 0.006 3.994 30 N -0.231 5.231 31 H 0.118 0.882 32 H 0.081 0.919 33 H 0.089 0.911 34 H 0.103 0.897 35 H 0.086 0.914 36 H 0.063 0.937 37 H 0.112 0.888 38 H 0.222 0.778 39 H 0.050 0.950 40 H 0.146 0.854 41 H 0.074 0.926 42 H 0.069 0.931 43 H 0.084 0.916 44 H 0.082 0.918 45 H 0.109 0.891 46 H 0.069 0.931 47 H 0.058 0.942 48 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -11.051 12.166 -12.676 20.756 hybrid contribution 0.629 -0.225 1.084 1.273 sum -10.422 11.942 -11.592 19.637 Atomic orbital electron populations 1.21932 0.90501 1.03486 1.04409 1.22787 0.96289 0.93060 0.86601 1.22213 1.01041 0.94968 1.04091 1.86338 1.29758 1.63156 1.40213 1.21378 0.86809 0.88989 0.90882 1.23612 0.93306 0.95832 0.99769 1.68703 1.05778 1.11736 1.23493 1.21811 0.97801 1.04569 0.92768 1.17797 0.84628 0.79135 0.82810 1.90711 1.57700 1.66030 1.30872 1.48129 1.15459 1.45553 1.21046 1.23221 0.95689 0.97371 0.85559 1.23121 0.87824 0.91032 0.95766 0.85814 1.22422 0.96751 0.99628 0.97196 1.22412 0.95240 1.00228 0.97482 1.22093 0.96797 0.92725 0.86122 0.89729 1.22331 0.82519 0.95675 1.01390 1.45775 1.05487 1.79591 1.02208 1.19402 0.93490 1.37633 0.84508 0.90209 1.25382 0.96467 1.03151 1.00353 1.69600 1.05866 1.56680 1.26762 0.85067 0.77739 0.76686 0.80128 1.19726 1.22381 1.22226 1.23577 0.89190 0.87484 0.99176 1.68245 1.08798 1.21554 1.24498 0.88209 0.91906 0.91065 0.89655 0.91384 0.93683 0.88805 0.77763 0.94973 0.85359 0.92559 0.93060 0.91613 0.91777 0.89137 0.93132 0.94198 0.78593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.56 71.98 0.69 -0.79 16 2 C 0.07 1.02 3.11 30.59 0.10 1.12 16 3 C -0.17 -2.17 9.53 71.98 0.69 -1.49 16 4 O -0.29 -5.72 9.77 -87.82 -0.86 -6.57 16 5 C 0.30 6.94 7.47 84.92 0.63 7.58 16 6 C 0.04 1.02 11.18 85.08 0.95 1.97 16 7 N -0.38 -11.51 6.27 -183.93 -1.15 -12.66 16 8 C -0.03 -1.01 6.57 41.77 0.27 -0.73 16 9 C 0.57 20.53 7.66 86.80 0.66 21.20 16 10 O -0.57 -21.82 15.83 -3.89 -0.06 -21.88 16 11 N -0.57 -22.14 2.24 -817.59 -1.83 -23.97 16 12 C 0.11 4.40 5.31 86.70 0.46 4.86 16 13 C 0.13 5.90 3.60 45.33 0.16 6.06 16 14 H 0.12 6.56 5.26 -2.39 -0.01 6.55 16 15 C -0.12 -4.72 6.20 31.55 0.20 -4.52 16 16 C -0.11 -4.16 6.20 31.55 0.20 -3.96 16 17 C 0.13 5.23 4.27 45.45 0.19 5.43 16 18 H 0.08 3.21 8.14 -2.38 -0.02 3.19 16 19 C 0.11 4.04 5.91 86.53 0.51 4.55 16 20 N -0.61 -29.55 2.85 -632.52 -1.80 -31.35 16 21 C -0.22 -11.80 10.44 84.04 0.88 -10.92 16 22 H 0.08 4.12 7.83 -2.91 -0.02 4.10 16 23 C -0.06 -3.28 5.50 84.86 0.47 -2.81 16 24 N -0.94 -52.46 10.22 21.65 0.22 -52.24 16 25 Si 0.97 44.54 29.55 68.60 2.03 46.57 16 26 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 27 H -0.30 -13.70 7.11 99.48 0.71 -13.00 16 28 H -0.29 -13.55 7.11 99.48 0.71 -12.85 16 29 C 0.16 4.21 10.76 84.93 0.91 5.13 16 30 N -0.50 -11.84 8.80 -307.07 -2.70 -14.54 16 31 H 0.10 0.60 8.14 -2.38 -0.02 0.58 16 32 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.07 0.68 8.14 -2.39 -0.02 0.67 16 34 H 0.09 1.40 6.99 -2.39 -0.02 1.39 16 35 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.21 3.86 8.06 -2.91 -0.02 3.84 16 39 H 0.03 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.13 4.96 4.34 -44.70 -0.19 4.77 16 41 H 0.06 2.05 7.89 -2.39 -0.02 2.03 16 42 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 43 H 0.07 2.25 7.84 -2.38 -0.02 2.23 16 44 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 45 H 0.09 3.23 7.08 -2.39 -0.02 3.21 16 46 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 47 H 0.25 13.54 8.31 -92.71 -0.77 12.76 16 48 H 0.20 4.41 7.66 -2.91 -0.02 4.39 16 Total: -1.00 -63.19 380.95 2.60 -60.59 By element: Atomic # 1 Polarization: 22.61 SS G_CDS: 0.79 Total: 23.40 kcal Atomic # 6 Polarization: 24.69 SS G_CDS: 7.97 Total: 32.66 kcal Atomic # 7 Polarization: -127.50 SS G_CDS: -7.27 Total: -134.77 kcal Atomic # 8 Polarization: -27.53 SS G_CDS: -0.92 Total: -28.45 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -63.19 2.60 -60.59 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029308161.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.910 kcal (2) G-P(sol) polarization free energy of solvation -63.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.593 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds