Wall clock time and date at job start Wed Apr 1 2020 04:24:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09000 * 109.58418 * 2 1 4 4 C 1.53196 * 109.58496 * 239.72199 * 2 1 3 5 5 C 1.53039 * 109.31245 * 185.57660 * 4 2 1 6 6 C 1.53036 * 109.53566 * 61.36488 * 5 4 2 7 7 H 1.08997 * 109.49775 * 178.65430 * 6 5 4 8 8 N 1.46502 * 109.50040 * 58.58560 * 6 5 4 9 9 C 1.34781 * 119.99906 * 155.06216 * 8 6 5 10 10 O 1.21549 * 119.99936 * 0.02562 * 9 8 6 11 11 C 1.47856 * 119.99503 * 180.02562 * 9 8 6 12 12 C 1.39612 * 120.11568 * 359.97438 * 11 9 8 13 13 C 1.37974 * 119.99618 * 180.02562 * 12 11 9 14 14 C 1.38264 * 120.22248 * 0.28345 * 13 12 11 15 15 C 1.38942 * 120.22144 * 359.44237 * 14 13 12 16 16 N 1.39971 * 119.99681 * 180.29389 * 15 14 13 17 17 C 1.34781 * 119.99521 * 147.21738 * 16 15 14 18 18 N 1.34783 * 119.99866 * 175.03677 * 17 16 15 19 19 O 1.21582 * 120.00223 * 355.04481 * 17 16 15 20 20 C 1.38627 * 120.00038 * 0.55268 * 15 14 13 21 21 C 1.53191 * 109.34074 * 298.61609 * 6 5 4 22 22 N 1.46922 * 109.58870 * 120.43306 * 2 1 3 23 23 C 1.36940 * 120.62966 * 353.41355 * 22 2 1 24 24 H 1.08007 * 120.00119 * 28.45938 * 23 22 2 25 25 C 1.38811 * 120.00213 * 208.45443 * 23 22 2 26 26 N 1.31619 * 119.99957 * 15.15009 * 25 23 22 27 27 Si 1.86793 * 120.00289 * 195.15177 * 25 23 22 28 28 H 1.48502 * 109.47591 * 89.99832 * 27 25 23 29 29 H 1.48498 * 109.47358 * 210.00023 * 27 25 23 30 30 H 1.48508 * 109.46954 * 330.00103 * 27 25 23 31 31 H 1.08993 * 109.47015 * 180.28208 * 1 2 3 32 32 H 1.09001 * 109.46573 * 300.27697 * 1 2 3 33 33 H 1.08997 * 109.46971 * 60.27463 * 1 2 3 34 34 H 1.09001 * 109.49475 * 65.62193 * 4 2 1 35 35 H 1.09004 * 109.49592 * 305.52874 * 4 2 1 36 36 H 1.08997 * 109.45838 * 301.34330 * 5 4 2 37 37 H 1.08999 * 109.44588 * 181.37625 * 5 4 2 38 38 H 0.96993 * 119.99544 * 335.06727 * 8 6 5 39 39 H 1.07995 * 120.00385 * 0.02562 * 12 11 9 40 40 H 1.08004 * 119.89180 * 180.02562 * 13 12 11 41 41 H 1.07995 * 119.88451 * 179.69625 * 14 13 12 42 42 H 0.96997 * 120.00690 * 327.22574 * 16 15 14 43 43 H 0.97005 * 120.00010 * 0.02562 * 18 17 16 44 44 H 0.97004 * 119.99811 * 180.02562 * 18 17 16 45 45 H 1.07998 * 120.11179 * 179.74124 * 20 15 14 46 46 H 1.09003 * 109.58739 * 174.43984 * 21 6 5 47 47 H 1.08998 * 109.58967 * 294.86497 * 21 6 5 48 48 H 0.96994 * 120.00469 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0436 -0.7277 -1.2464 5 6 3.5675 -0.8464 -1.1714 6 6 3.9569 -1.6658 0.0611 7 1 5.0411 -1.7702 0.1009 8 7 3.3405 -2.9924 -0.0189 9 6 3.8964 -4.0341 0.6312 10 8 4.9088 -3.8727 1.2841 11 6 3.2745 -5.3730 0.5499 12 6 2.1113 -5.5609 -0.1989 13 6 1.5328 -6.8113 -0.2726 14 6 2.0979 -7.8802 0.3981 15 6 3.2586 -7.7048 1.1414 16 7 3.8301 -8.7915 1.8135 17 6 5.1678 -8.8651 1.9603 18 7 5.7118 -9.8573 2.6926 19 8 5.8839 -8.0364 1.4323 20 6 3.8477 -6.4525 1.2217 21 6 3.4658 -0.9490 1.3228 22 7 2.0227 -0.7011 1.1935 23 6 1.1538 -1.1163 2.1671 24 1 0.1336 -1.3621 1.9114 25 6 1.5841 -1.2215 3.4826 26 7 2.7109 -0.6515 3.8539 27 14 0.5642 -2.1718 4.7259 28 1 0.9918 -3.5939 4.7336 29 1 0.7612 -1.5884 6.0772 30 1 -0.8715 -2.0887 4.3553 31 1 -0.3633 -1.0276 0.0051 32 1 -0.3632 0.5181 0.8875 33 1 -0.3633 0.5095 -0.8924 34 1 1.7660 -0.1640 -2.1371 35 1 1.6030 -1.7236 -1.2937 36 1 4.0061 0.1488 -1.0993 37 1 3.9375 -1.3422 -2.0688 38 1 2.5325 -3.1210 -0.5397 39 1 1.6644 -4.7276 -0.7205 40 1 0.6332 -6.9548 -0.8528 41 1 1.6378 -8.8556 0.3406 42 1 3.2634 -9.4917 2.1735 43 1 5.1406 -10.5186 3.1137 44 1 6.6746 -9.9101 2.7986 45 1 4.7475 -6.3133 1.8024 46 1 3.6530 -1.5752 2.1951 47 1 3.9911 -0.0002 1.4320 48 1 3.0115 -0.7246 4.7732 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001072063090.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:37 Heat of formation + Delta-G solvation = -11.279180 kcal Electronic energy + Delta-G solvation = -31508.584391 eV Core-core repulsion = 27371.134077 eV Total energy + Delta-G solvation = -4137.450314 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.179 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.74412 -39.59841 -38.33509 -37.22727 -34.82551 -34.08215 -33.82619 -32.67550 -31.32836 -30.37975 -29.81415 -29.10151 -26.19361 -24.97453 -23.76467 -23.24751 -22.10621 -21.09923 -20.75175 -20.20577 -18.68392 -18.53176 -18.36490 -17.04772 -16.37609 -15.94958 -15.63640 -15.56673 -15.22961 -14.93177 -14.61587 -14.29494 -13.97941 -13.90243 -13.81382 -13.55531 -13.35680 -13.09023 -12.83113 -12.56426 -12.40860 -11.86101 -11.82613 -11.50306 -11.14755 -11.12377 -10.89138 -10.82645 -10.66599 -10.58490 -10.32315 -10.29439 -10.27078 -9.94840 -9.90373 -9.49652 -9.39118 -9.24475 -8.83629 -8.38203 -8.25222 -8.14568 -6.54471 -5.67792 -3.11674 1.02330 1.42216 2.53640 2.89725 3.36938 3.42768 3.48269 3.50538 3.76991 4.15059 4.21937 4.55806 4.86561 4.93663 5.21034 5.26657 5.36940 5.42403 5.46230 5.50600 5.56446 5.57456 5.66439 5.89691 6.06792 6.11929 6.16773 6.20271 6.30417 6.37494 6.38885 6.42155 6.48888 6.50067 6.57875 6.59370 6.63196 6.66716 6.76940 6.96103 7.01934 7.09320 7.18010 7.48473 7.59427 7.79391 7.90244 8.21838 8.32373 8.55820 8.91382 9.30134 9.95069 10.50603 11.39928 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.011081 B = 0.003702 C = 0.003356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2526.348426 B = 7562.585318 C = 8340.756515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.165 3.835 3 H 0.024 0.976 4 C -0.130 4.130 5 C -0.119 4.119 6 C 0.118 3.882 7 H 0.076 0.924 8 N -0.694 5.694 9 C 0.555 3.445 10 O -0.537 6.537 11 C -0.099 4.099 12 C -0.100 4.100 13 C -0.107 4.107 14 C -0.131 4.131 15 C 0.150 3.850 16 N -0.684 5.684 17 C 0.701 3.299 18 N -0.863 5.863 19 O -0.565 6.565 20 C -0.064 4.064 21 C 0.161 3.839 22 N -0.582 5.582 23 C -0.249 4.249 24 H 0.068 0.932 25 C 0.006 3.994 26 N -0.899 5.899 27 Si 0.895 3.105 28 H -0.289 1.289 29 H -0.292 1.292 30 H -0.280 1.280 31 H 0.051 0.949 32 H 0.060 0.940 33 H 0.036 0.964 34 H 0.053 0.947 35 H 0.054 0.946 36 H 0.070 0.930 37 H 0.051 0.949 38 H 0.394 0.606 39 H 0.127 0.873 40 H 0.131 0.869 41 H 0.126 0.874 42 H 0.406 0.594 43 H 0.397 0.603 44 H 0.418 0.582 45 H 0.149 0.851 46 H 0.099 0.901 47 H 0.025 0.975 48 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.529 -16.692 -8.745 18.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.058 3.942 3 H 0.042 0.958 4 C -0.170 4.170 5 C -0.157 4.157 6 C 0.012 3.988 7 H 0.094 0.906 8 N -0.345 5.345 9 C 0.341 3.659 10 O -0.415 6.415 11 C -0.103 4.103 12 C -0.119 4.119 13 C -0.126 4.126 14 C -0.152 4.152 15 C 0.056 3.944 16 N -0.333 5.333 17 C 0.400 3.600 18 N -0.432 5.432 19 O -0.441 6.441 20 C -0.085 4.085 21 C 0.034 3.966 22 N -0.306 5.306 23 C -0.378 4.378 24 H 0.086 0.914 25 C -0.193 4.193 26 N -0.543 5.543 27 Si 0.725 3.275 28 H -0.216 1.216 29 H -0.219 1.219 30 H -0.205 1.205 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.055 0.945 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.089 0.911 37 H 0.070 0.930 38 H 0.229 0.771 39 H 0.145 0.855 40 H 0.149 0.851 41 H 0.144 0.856 42 H 0.242 0.758 43 H 0.225 0.775 44 H 0.251 0.749 45 H 0.167 0.833 46 H 0.117 0.883 47 H 0.043 0.957 48 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -0.212 -15.765 -8.570 17.945 hybrid contribution -1.090 -1.335 1.037 2.011 sum -1.302 -17.100 -7.533 18.731 Atomic orbital electron populations 1.21796 0.96169 1.01221 1.00101 1.20456 0.92832 0.93639 0.87229 0.95801 1.22071 0.95219 1.00589 0.99084 1.21692 0.96956 1.00158 0.96872 1.21791 0.97049 0.81711 0.98203 0.90595 1.45735 1.29266 1.08445 1.51015 1.18050 0.84172 0.83972 0.79714 1.90760 1.25079 1.84930 1.40776 1.19989 0.96372 0.94169 0.99788 1.21311 0.94637 0.97637 0.98358 1.20811 1.00014 0.92094 0.99681 1.20911 0.96661 0.99693 0.97935 1.17309 0.94723 0.86352 0.96034 1.42488 1.05905 1.25171 1.59727 1.15989 0.82004 0.82259 0.79770 1.42954 1.11996 1.31431 1.56792 1.91075 1.60013 1.41370 1.51595 1.21281 1.00236 0.89242 0.97726 1.21227 0.83606 0.97098 0.94629 1.44062 1.02747 1.64643 1.19130 1.19089 0.94388 1.38046 0.86318 0.91406 1.25022 0.97630 0.99713 0.96915 1.69975 1.22933 1.44520 1.16887 0.86409 0.79732 0.80142 0.81214 1.21571 1.21868 1.20541 0.92949 0.92102 0.94466 0.92875 0.92783 0.91099 0.93007 0.77057 0.85470 0.85127 0.85630 0.75849 0.77516 0.74917 0.83306 0.88283 0.95743 0.93714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 7.94 37.16 0.30 -2.15 16 2 C 0.17 3.27 3.50 -67.60 -0.24 3.03 16 3 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 4 C -0.13 -2.09 5.21 -26.61 -0.14 -2.23 16 5 C -0.12 -1.93 5.59 -26.69 -0.15 -2.08 16 6 C 0.12 2.36 2.81 -67.81 -0.19 2.17 16 7 H 0.08 1.58 7.58 -51.93 -0.39 1.19 16 8 N -0.69 -13.23 4.87 -54.63 -0.27 -13.50 16 9 C 0.55 11.72 7.74 -12.32 -0.10 11.63 16 10 O -0.54 -13.45 16.01 5.32 0.09 -13.37 16 11 C -0.10 -1.79 5.87 -104.99 -0.62 -2.40 16 12 C -0.10 -1.42 9.54 -39.17 -0.37 -1.79 16 13 C -0.11 -1.23 10.02 -39.67 -0.40 -1.63 16 14 C -0.13 -1.45 9.95 -39.31 -0.39 -1.84 16 15 C 0.15 2.06 6.28 -83.74 -0.53 1.53 16 16 N -0.68 -7.19 5.35 -14.26 -0.08 -7.26 16 17 C 0.70 8.63 8.58 -86.91 -0.75 7.88 16 18 N -0.86 -6.02 8.88 27.64 0.25 -5.77 16 19 O -0.57 -10.04 14.83 5.29 0.08 -9.97 16 20 C -0.06 -1.14 8.20 -38.98 -0.32 -1.46 16 21 C 0.16 3.95 4.90 -3.67 -0.02 3.93 16 22 N -0.58 -14.00 2.91 -164.71 -0.48 -14.48 16 23 C -0.25 -6.62 8.63 -15.06 -0.13 -6.75 16 24 H 0.07 1.76 6.18 -52.48 -0.32 1.43 16 25 C 0.01 0.17 4.96 -17.43 -0.09 0.09 16 26 N -0.90 -26.89 11.10 55.49 0.62 -26.27 16 27 Si 0.89 22.37 29.58 -169.99 -5.03 17.34 16 28 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 29 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 30 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 31 H 0.05 0.94 7.40 -51.93 -0.38 0.56 16 32 H 0.06 1.21 7.65 -51.93 -0.40 0.81 16 33 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.05 0.84 6.40 -51.93 -0.33 0.51 16 36 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.39 6.59 4.80 -40.82 -0.20 6.39 16 39 H 0.13 1.59 6.40 -52.49 -0.34 1.26 16 40 H 0.13 1.09 8.06 -52.48 -0.42 0.66 16 41 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 42 H 0.41 2.50 8.83 -40.82 -0.36 2.14 16 43 H 0.40 1.29 8.85 -40.82 -0.36 0.93 16 44 H 0.42 2.59 8.93 -40.82 -0.36 2.22 16 45 H 0.15 3.09 5.97 -52.49 -0.31 2.78 16 46 H 0.10 2.88 6.03 -51.93 -0.31 2.57 16 47 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 48 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 382.85 15.07 5.77 5.77 Total: -1.00 -37.25 382.85 -9.77 -47.02 By element: Atomic # 1 Polarization: 19.15 SS G_CDS: -6.59 Total: 12.55 kcal Atomic # 6 Polarization: 12.05 SS G_CDS: -4.12 Total: 7.93 kcal Atomic # 7 Polarization: -67.32 SS G_CDS: 0.04 Total: -67.28 kcal Atomic # 8 Polarization: -23.50 SS G_CDS: 0.16 Total: -23.33 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.03 Total: 17.34 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -37.25 -9.77 -47.02 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072063090.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.738 kcal (2) G-P(sol) polarization free energy of solvation -37.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds