Wall clock time and date at job start Wed Apr 1 2020 04:24:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09000 * 109.58418 * 2 1 4 4 C 1.53196 * 109.58496 * 239.72199 * 2 1 3 5 5 C 1.53039 * 109.31245 * 185.57660 * 4 2 1 6 6 C 1.53036 * 109.53566 * 61.36488 * 5 4 2 7 7 H 1.08997 * 109.49775 * 178.65430 * 6 5 4 8 8 N 1.46502 * 109.50040 * 58.58560 * 6 5 4 9 9 C 1.34781 * 119.99906 * 155.06216 * 8 6 5 10 10 O 1.21549 * 119.99936 * 0.02562 * 9 8 6 11 11 C 1.47856 * 119.99503 * 180.02562 * 9 8 6 12 12 C 1.39612 * 120.11568 * 359.97438 * 11 9 8 13 13 C 1.37974 * 119.99618 * 180.02562 * 12 11 9 14 14 C 1.38264 * 120.22248 * 0.28345 * 13 12 11 15 15 C 1.38942 * 120.22144 * 359.44237 * 14 13 12 16 16 N 1.39971 * 119.99681 * 180.29389 * 15 14 13 17 17 C 1.34781 * 119.99521 * 147.21738 * 16 15 14 18 18 N 1.34783 * 119.99866 * 175.03677 * 17 16 15 19 19 O 1.21582 * 120.00223 * 355.04481 * 17 16 15 20 20 C 1.38627 * 120.00038 * 0.55268 * 15 14 13 21 21 C 1.53191 * 109.34074 * 298.61609 * 6 5 4 22 22 N 1.46922 * 109.58870 * 120.43306 * 2 1 3 23 23 C 1.36940 * 120.62966 * 353.41355 * 22 2 1 24 24 H 1.08007 * 120.00119 * 28.45938 * 23 22 2 25 25 C 1.38811 * 120.00213 * 208.45443 * 23 22 2 26 26 N 1.31619 * 119.99957 * 15.15009 * 25 23 22 27 27 Si 1.86793 * 120.00289 * 195.15177 * 25 23 22 28 28 H 1.48502 * 109.47591 * 89.99832 * 27 25 23 29 29 H 1.48498 * 109.47358 * 210.00023 * 27 25 23 30 30 H 1.48508 * 109.46954 * 330.00103 * 27 25 23 31 31 H 1.08993 * 109.47015 * 180.28208 * 1 2 3 32 32 H 1.09001 * 109.46573 * 300.27697 * 1 2 3 33 33 H 1.08997 * 109.46971 * 60.27463 * 1 2 3 34 34 H 1.09001 * 109.49475 * 65.62193 * 4 2 1 35 35 H 1.09004 * 109.49592 * 305.52874 * 4 2 1 36 36 H 1.08997 * 109.45838 * 301.34330 * 5 4 2 37 37 H 1.08999 * 109.44588 * 181.37625 * 5 4 2 38 38 H 0.96993 * 119.99544 * 335.06727 * 8 6 5 39 39 H 1.07995 * 120.00385 * 0.02562 * 12 11 9 40 40 H 1.08004 * 119.89180 * 180.02562 * 13 12 11 41 41 H 1.07995 * 119.88451 * 179.69625 * 14 13 12 42 42 H 0.96997 * 120.00690 * 327.22574 * 16 15 14 43 43 H 0.97005 * 120.00010 * 0.02562 * 18 17 16 44 44 H 0.97004 * 119.99811 * 180.02562 * 18 17 16 45 45 H 1.07998 * 120.11179 * 179.74124 * 20 15 14 46 46 H 1.09003 * 109.58739 * 174.43984 * 21 6 5 47 47 H 1.08998 * 109.58967 * 294.86497 * 21 6 5 48 48 H 0.96994 * 120.00469 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0436 -0.7277 -1.2464 5 6 3.5675 -0.8464 -1.1714 6 6 3.9569 -1.6658 0.0611 7 1 5.0411 -1.7702 0.1009 8 7 3.3405 -2.9924 -0.0189 9 6 3.8964 -4.0341 0.6312 10 8 4.9088 -3.8727 1.2841 11 6 3.2745 -5.3730 0.5499 12 6 2.1113 -5.5609 -0.1989 13 6 1.5328 -6.8113 -0.2726 14 6 2.0979 -7.8802 0.3981 15 6 3.2586 -7.7048 1.1414 16 7 3.8301 -8.7915 1.8135 17 6 5.1678 -8.8651 1.9603 18 7 5.7118 -9.8573 2.6926 19 8 5.8839 -8.0364 1.4323 20 6 3.8477 -6.4525 1.2217 21 6 3.4658 -0.9490 1.3228 22 7 2.0227 -0.7011 1.1935 23 6 1.1538 -1.1163 2.1671 24 1 0.1336 -1.3621 1.9114 25 6 1.5841 -1.2215 3.4826 26 7 2.7109 -0.6515 3.8539 27 14 0.5642 -2.1718 4.7259 28 1 0.9918 -3.5939 4.7336 29 1 0.7612 -1.5884 6.0772 30 1 -0.8715 -2.0887 4.3553 31 1 -0.3633 -1.0276 0.0051 32 1 -0.3632 0.5181 0.8875 33 1 -0.3633 0.5095 -0.8924 34 1 1.7660 -0.1640 -2.1371 35 1 1.6030 -1.7236 -1.2937 36 1 4.0061 0.1488 -1.0993 37 1 3.9375 -1.3422 -2.0688 38 1 2.5325 -3.1210 -0.5397 39 1 1.6644 -4.7276 -0.7205 40 1 0.6332 -6.9548 -0.8528 41 1 1.6378 -8.8556 0.3406 42 1 3.2634 -9.4917 2.1735 43 1 5.1406 -10.5186 3.1137 44 1 6.6746 -9.9101 2.7986 45 1 4.7475 -6.3133 1.8024 46 1 3.6530 -1.5752 2.1951 47 1 3.9911 -0.0002 1.4320 48 1 3.0115 -0.7246 4.7732 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001072063090.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:36 Heat of formation + Delta-G solvation = -41.595095 kcal Electronic energy + Delta-G solvation = -31509.898988 eV Core-core repulsion = 27371.134077 eV Total energy + Delta-G solvation = -4138.764911 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.179 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.80197 -41.05554 -39.63411 -38.76881 -35.95283 -35.75849 -34.72820 -34.47334 -32.68391 -31.79665 -31.57969 -30.19234 -27.86461 -26.80735 -25.08239 -24.25198 -23.86323 -22.23975 -22.11210 -21.69493 -20.38182 -19.60374 -19.35941 -18.22344 -18.07265 -17.22084 -17.16251 -16.71692 -16.45091 -16.38361 -15.97588 -15.71102 -15.65238 -15.43790 -15.16632 -14.94688 -14.67614 -14.54210 -14.45627 -14.01823 -13.78938 -13.55173 -13.04051 -12.85673 -12.80100 -12.64564 -12.60196 -12.53980 -12.39368 -12.08408 -12.04782 -11.67250 -11.56212 -11.36403 -11.22702 -11.04145 -10.92234 -10.78798 -10.51418 -10.09188 -9.82553 -9.16535 -8.57435 -7.80047 -5.25013 -0.12414 0.33793 1.39199 1.42939 1.49650 1.67186 1.85041 2.10563 2.30379 2.51341 2.94264 3.36150 3.45657 3.64055 3.75957 3.94241 4.03404 4.10518 4.14014 4.20219 4.24350 4.44327 4.50242 4.52169 4.66419 4.75112 4.83359 4.90331 4.97809 5.05852 5.09636 5.12775 5.19236 5.28238 5.30684 5.33236 5.40939 5.42952 5.60241 5.63724 5.69808 5.75205 5.76219 5.79805 5.88300 5.97552 6.45328 6.67961 6.92357 7.19401 7.34965 7.48734 7.94637 8.45408 9.25285 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.011081 B = 0.003702 C = 0.003356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2526.348426 B = 7562.585318 C = 8340.756515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.153 3.847 3 H 0.013 0.987 4 C -0.118 4.118 5 C -0.110 4.110 6 C 0.126 3.874 7 H 0.057 0.943 8 N -0.680 5.680 9 C 0.544 3.456 10 O -0.596 6.596 11 C -0.133 4.133 12 C -0.100 4.100 13 C -0.094 4.094 14 C -0.108 4.108 15 C 0.145 3.855 16 N -0.669 5.669 17 C 0.692 3.308 18 N -0.836 5.836 19 O -0.628 6.628 20 C -0.098 4.098 21 C 0.172 3.828 22 N -0.593 5.593 23 C -0.232 4.232 24 H 0.082 0.918 25 C -0.059 4.059 26 N -0.940 5.940 27 Si 0.949 3.051 28 H -0.300 1.300 29 H -0.303 1.303 30 H -0.254 1.254 31 H 0.054 0.946 32 H 0.034 0.966 33 H 0.077 0.923 34 H 0.094 0.906 35 H 0.065 0.935 36 H 0.073 0.927 37 H 0.085 0.915 38 H 0.408 0.592 39 H 0.145 0.855 40 H 0.179 0.821 41 H 0.177 0.823 42 H 0.430 0.570 43 H 0.419 0.581 44 H 0.424 0.576 45 H 0.102 0.898 46 H 0.046 0.954 47 H -0.005 1.005 48 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.665 -19.458 -12.082 23.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.047 3.953 3 H 0.031 0.969 4 C -0.157 4.157 5 C -0.148 4.148 6 C 0.019 3.981 7 H 0.075 0.925 8 N -0.331 5.331 9 C 0.332 3.668 10 O -0.479 6.479 11 C -0.137 4.137 12 C -0.120 4.120 13 C -0.112 4.112 14 C -0.128 4.128 15 C 0.050 3.950 16 N -0.320 5.320 17 C 0.391 3.609 18 N -0.406 5.406 19 O -0.508 6.508 20 C -0.120 4.120 21 C 0.045 3.955 22 N -0.317 5.317 23 C -0.363 4.363 24 H 0.100 0.900 25 C -0.254 4.254 26 N -0.588 5.588 27 Si 0.779 3.221 28 H -0.228 1.228 29 H -0.230 1.230 30 H -0.178 1.178 31 H 0.073 0.927 32 H 0.053 0.947 33 H 0.096 0.904 34 H 0.112 0.888 35 H 0.084 0.916 36 H 0.092 0.908 37 H 0.103 0.897 38 H 0.247 0.753 39 H 0.163 0.837 40 H 0.197 0.803 41 H 0.194 0.806 42 H 0.270 0.730 43 H 0.251 0.749 44 H 0.257 0.743 45 H 0.120 0.880 46 H 0.064 0.936 47 H 0.013 0.987 48 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -4.445 -18.596 -11.929 22.536 hybrid contribution 0.189 -0.522 2.044 2.118 sum -4.256 -19.118 -9.885 21.939 Atomic orbital electron populations 1.21724 0.94341 1.01572 1.00866 1.20798 0.94424 0.93143 0.86890 0.96913 1.21971 0.94264 1.01253 0.98245 1.21669 0.97753 0.99727 0.95645 1.21524 0.96050 0.82433 0.98078 0.92459 1.45585 1.29486 1.07525 1.50501 1.18808 0.83584 0.85761 0.78616 1.90714 1.27804 1.86043 1.43315 1.19836 0.98734 0.92177 1.02962 1.21554 0.93065 0.99900 0.97466 1.21387 1.00633 0.90461 0.98679 1.21479 0.94478 1.01904 0.94958 1.17467 0.95485 0.85466 0.96598 1.42283 1.05561 1.24871 1.59236 1.16324 0.82345 0.82404 0.79865 1.42712 1.12639 1.30275 1.55011 1.91051 1.61551 1.43925 1.54243 1.21088 0.99922 0.91771 0.99193 1.20842 0.84459 0.95132 0.95082 1.44274 1.01987 1.65338 1.20126 1.19488 0.94908 1.35394 0.86466 0.90005 1.25759 0.98872 1.01628 0.99102 1.70171 1.25152 1.47181 1.16259 0.85505 0.79781 0.77965 0.78836 1.22798 1.22985 1.17791 0.92653 0.94696 0.90449 0.88789 0.91615 0.90834 0.89660 0.75342 0.83734 0.80322 0.80566 0.73021 0.74943 0.74276 0.88012 0.93572 0.98685 0.95101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.20 7.94 71.98 0.57 -3.63 16 2 C 0.15 5.77 3.50 44.98 0.16 5.92 16 3 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 4 C -0.12 -3.35 5.21 30.67 0.16 -3.19 16 5 C -0.11 -3.36 5.59 30.62 0.17 -3.19 16 6 C 0.13 5.20 2.81 45.07 0.13 5.33 16 7 H 0.06 2.58 7.58 -2.39 -0.02 2.56 16 8 N -0.68 -26.46 4.87 -445.03 -2.17 -28.63 16 9 C 0.54 24.58 7.74 86.79 0.67 25.26 16 10 O -0.60 -33.20 16.01 -3.87 -0.06 -33.26 16 11 C -0.13 -4.96 5.87 -20.10 -0.12 -5.08 16 12 C -0.10 -2.61 9.54 22.54 0.21 -2.40 16 13 C -0.09 -1.67 10.02 22.21 0.22 -1.45 16 14 C -0.11 -1.88 9.95 22.44 0.22 -1.66 16 15 C 0.15 3.81 6.28 38.10 0.24 4.05 16 16 N -0.67 -13.11 5.35 -317.28 -1.70 -14.80 16 17 C 0.69 17.24 8.58 179.05 1.54 18.77 16 18 N -0.84 -10.90 8.88 -184.74 -1.64 -12.54 16 19 O -0.63 -23.97 14.83 -3.97 -0.06 -24.03 16 20 C -0.10 -3.71 8.20 22.66 0.19 -3.53 16 21 C 0.17 8.98 4.90 86.35 0.42 9.41 16 22 N -0.59 -28.97 2.91 -675.03 -1.97 -30.93 16 23 C -0.23 -12.48 8.63 84.03 0.72 -11.75 16 24 H 0.08 4.13 6.18 -2.91 -0.02 4.11 16 25 C -0.06 -3.47 4.96 84.86 0.42 -3.05 16 26 N -0.94 -60.14 11.10 21.65 0.24 -59.90 16 27 Si 0.95 47.43 29.58 68.60 2.03 49.46 16 28 H -0.30 -15.37 7.11 99.48 0.71 -14.66 16 29 H -0.30 -15.48 7.11 99.48 0.71 -14.78 16 30 H -0.25 -11.47 7.11 99.48 0.71 -10.76 16 31 H 0.05 1.78 7.40 -2.39 -0.02 1.76 16 32 H 0.03 1.31 7.65 -2.39 -0.02 1.29 16 33 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 35 H 0.07 1.74 6.40 -2.38 -0.02 1.72 16 36 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 37 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 38 H 0.41 13.04 4.80 -92.71 -0.45 12.59 16 39 H 0.15 3.12 6.40 -2.91 -0.02 3.10 16 40 H 0.18 1.58 8.06 -2.91 -0.02 1.56 16 41 H 0.18 1.36 8.06 -2.91 -0.02 1.33 16 42 H 0.43 3.92 8.83 -92.71 -0.82 3.10 16 43 H 0.42 1.78 8.85 -92.70 -0.82 0.96 16 44 H 0.42 5.06 8.93 -92.71 -0.83 4.23 16 45 H 0.10 4.78 5.97 -2.91 -0.02 4.76 16 46 H 0.05 2.92 6.03 -2.39 -0.01 2.90 16 47 H 0.00 -0.27 8.14 -2.39 -0.02 -0.29 16 48 H 0.24 15.28 8.31 -92.71 -0.77 14.51 16 Total: -1.00 -94.81 382.85 -1.25 -96.06 By element: Atomic # 1 Polarization: 30.63 SS G_CDS: -1.86 Total: 28.77 kcal Atomic # 6 Polarization: 23.88 SS G_CDS: 5.93 Total: 29.81 kcal Atomic # 7 Polarization: -139.58 SS G_CDS: -7.23 Total: -146.81 kcal Atomic # 8 Polarization: -57.17 SS G_CDS: -0.12 Total: -57.29 kcal Atomic # 14 Polarization: 47.43 SS G_CDS: 2.03 Total: 49.46 kcal Total: -94.81 -1.25 -96.06 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072063090.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.467 kcal (2) G-P(sol) polarization free energy of solvation -94.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds