Wall clock time and date at job start Wed Apr 1 2020 04:32:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.58430 * 2 1 4 4 C 1.53192 * 109.70186 * 120.35332 * 2 1 3 5 5 C 1.53041 * 109.31230 * 65.22526 * 4 2 1 6 6 H 1.09004 * 109.44826 * 301.34639 * 5 4 2 7 7 N 1.46500 * 109.45869 * 181.38715 * 5 4 2 8 8 C 1.34772 * 120.00333 * 154.93153 * 7 5 4 9 9 O 1.21280 * 119.99779 * 359.97438 * 8 7 5 10 10 C 1.50703 * 120.00252 * 179.97438 * 8 7 5 11 11 N 1.46506 * 109.47110 * 179.97438 * 10 8 7 12 12 C 1.34773 * 119.99941 * 179.97438 * 11 10 8 13 13 O 1.21522 * 119.99928 * 0.02562 * 12 11 10 14 14 C 1.48172 * 120.00016 * 179.97438 * 12 11 10 15 15 C 1.39304 * 119.72316 * 180.02562 * 14 12 11 16 16 C 1.38589 * 119.05940 * 180.02562 * 15 14 12 17 17 C 1.38621 * 118.48590 * 359.97438 * 16 15 14 18 18 C 1.38550 * 119.35640 * 0.02562 * 17 16 15 19 19 N 1.31532 * 120.90432 * 359.97438 * 18 17 16 20 20 C 1.53032 * 109.54193 * 61.36427 * 5 4 2 21 21 C 1.53194 * 109.31042 * 298.63687 * 20 5 4 22 22 N 1.46922 * 108.78007 * 54.63476 * 21 20 5 23 23 C 1.36930 * 120.63503 * 126.41345 * 22 21 20 24 24 H 1.07997 * 120.00399 * 207.67724 * 23 22 21 25 25 C 1.38812 * 120.00077 * 27.67680 * 23 22 21 26 26 N 1.31620 * 119.99689 * 17.35426 * 25 23 22 27 27 Si 1.86804 * 120.00363 * 197.35663 * 25 23 22 28 28 H 1.48495 * 109.47095 * 59.99866 * 27 25 23 29 29 H 1.48499 * 109.47210 * 179.97438 * 27 25 23 30 30 H 1.48496 * 109.46715 * 299.99863 * 27 25 23 31 31 H 1.09005 * 109.46949 * 180.28611 * 1 2 3 32 32 H 1.08993 * 109.47041 * 300.28901 * 1 2 3 33 33 H 1.08996 * 109.47059 * 60.28968 * 1 2 3 34 34 H 1.08996 * 109.49566 * 305.26714 * 4 2 1 35 35 H 1.09001 * 109.49550 * 185.17140 * 4 2 1 36 36 H 0.97006 * 120.00126 * 334.92395 * 7 5 4 37 37 H 1.09000 * 109.46956 * 59.99855 * 10 8 7 38 38 H 1.08997 * 109.47066 * 299.99571 * 10 8 7 39 39 H 0.97001 * 119.99479 * 0.02562 * 11 10 8 40 40 H 1.08008 * 120.46821 * 0.02562 * 15 14 12 41 41 H 1.08007 * 120.75480 * 179.97438 * 16 15 14 42 42 H 1.08006 * 120.32261 * 179.97438 * 17 16 15 43 43 H 1.07997 * 119.55432 * 179.97438 * 18 17 16 44 44 H 1.09005 * 109.50127 * 58.58094 * 20 5 4 45 45 H 1.08998 * 109.49815 * 178.68340 * 20 5 4 46 46 H 1.09008 * 109.58685 * 174.42476 * 21 20 5 47 47 H 1.09004 * 109.58691 * 294.84531 * 21 20 5 48 48 H 0.97007 * 119.99749 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0465 -0.7288 1.2445 5 6 1.6473 -2.2043 1.1691 6 1 0.5624 -2.2837 1.0995 7 7 2.1110 -2.8975 2.3736 8 6 1.4856 -4.0164 2.7901 9 8 0.5387 -4.4491 2.1680 10 6 1.9630 -4.7297 4.0288 11 7 1.1246 -5.9072 4.2679 12 6 1.3675 -6.7034 5.3278 13 8 2.2817 -6.4444 6.0854 14 6 0.5193 -7.8939 5.5700 15 6 0.7752 -8.7126 6.6676 16 6 -0.0264 -9.8229 6.8807 17 6 -1.0569 -10.0754 5.9885 18 6 -1.2539 -9.2181 4.9181 19 7 -0.4779 -8.1712 4.7393 20 6 2.2857 -2.8449 -0.0654 21 6 1.7720 -2.1400 -1.3248 22 7 2.0226 -0.6981 -1.1954 23 6 2.7019 -0.0177 -2.1703 24 1 3.2656 0.8682 -1.9178 25 6 2.6661 -0.4666 -3.4834 26 7 1.7347 -1.3154 -3.8634 27 14 3.9397 0.1338 -4.7109 28 1 5.2968 -0.2424 -4.2401 29 1 3.6846 -0.4902 -6.0341 30 1 3.8503 1.6110 -4.8343 31 1 -0.3633 -1.0277 0.0051 32 1 -0.3633 0.5183 0.8873 33 1 -0.3633 0.5093 -0.8925 34 1 1.6106 -0.2790 2.1366 35 1 3.1326 -0.6476 1.2892 36 1 2.8682 -2.5512 2.8714 37 1 1.8964 -4.0570 4.8839 38 1 2.9982 -5.0422 3.8920 39 1 0.3951 -6.1140 3.6629 40 1 1.5869 -8.4854 7.3429 41 1 0.1478 -10.4765 7.7227 42 1 -1.6995 -10.9325 6.1261 43 1 -2.0555 -9.4120 4.2208 44 1 3.3696 -2.7437 -0.0085 45 1 2.0201 -3.9012 -0.1056 46 1 2.2970 -2.5251 -2.1990 47 1 0.7017 -2.3167 -1.4316 48 1 1.7098 -1.6294 -4.7809 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274662781.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:32:07 Heat of formation + Delta-G solvation = -13.804838 kcal Electronic energy + Delta-G solvation = -29656.337122 eV Core-core repulsion = 25518.777287 eV Total energy + Delta-G solvation = -4137.559835 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.179 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.98099 -40.02358 -39.02394 -37.78414 -34.88409 -34.44581 -33.01341 -32.56390 -31.89286 -30.91546 -29.79218 -28.07688 -26.80584 -24.81258 -24.18730 -23.83522 -22.07154 -21.79191 -20.96920 -20.43876 -19.04213 -18.24644 -17.20795 -17.12252 -16.52097 -16.35463 -16.09141 -15.93559 -15.41142 -15.15493 -14.97439 -14.65344 -14.17414 -13.98237 -13.79713 -13.73744 -13.62652 -13.30817 -13.02068 -12.92782 -12.56401 -12.41843 -12.39469 -12.20248 -11.42437 -11.08189 -10.95242 -10.80015 -10.68730 -10.62150 -10.43297 -10.37174 -10.21607 -10.09847 -9.94883 -9.83331 -9.73077 -9.69014 -9.37621 -9.36509 -8.78263 -8.41774 -6.69738 -5.78691 -3.21091 0.22982 0.77104 2.39781 2.59310 2.61277 3.35398 3.39118 3.44678 3.45277 3.48938 3.77927 4.36226 4.39102 4.48566 4.53805 4.59989 4.64678 4.96217 5.10594 5.13720 5.26420 5.27699 5.37418 5.39563 5.52374 5.58238 5.63902 5.76901 5.99910 6.02599 6.05458 6.11619 6.24335 6.27958 6.39336 6.44419 6.57240 6.63724 6.77432 6.84028 6.93550 7.11928 7.14900 7.37623 7.43324 7.56057 7.69250 7.79646 7.88320 8.22516 8.45233 9.21048 9.84538 10.41047 11.29523 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.021612 B = 0.001877 C = 0.001835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.265704 B =14915.168778 C =15254.067384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.170 3.830 3 H 0.066 0.934 4 C -0.133 4.133 5 C 0.149 3.851 6 H 0.087 0.913 7 N -0.718 5.718 8 C 0.504 3.496 9 O -0.534 6.534 10 C 0.097 3.903 11 N -0.695 5.695 12 C 0.573 3.427 13 O -0.537 6.537 14 C 0.080 3.920 15 C -0.111 4.111 16 C -0.083 4.083 17 C -0.150 4.150 18 C 0.100 3.900 19 N -0.455 5.455 20 C -0.147 4.147 21 C 0.174 3.826 22 N -0.584 5.584 23 C -0.254 4.254 24 H 0.065 0.935 25 C 0.003 3.997 26 N -0.900 5.900 27 Si 0.902 3.098 28 H -0.284 1.284 29 H -0.291 1.291 30 H -0.283 1.283 31 H 0.049 0.951 32 H 0.036 0.964 33 H 0.055 0.945 34 H 0.056 0.944 35 H 0.064 0.936 36 H 0.398 0.602 37 H 0.100 0.900 38 H 0.101 0.899 39 H 0.424 0.576 40 H 0.149 0.851 41 H 0.143 0.857 42 H 0.141 0.859 43 H 0.165 0.835 44 H 0.055 0.945 45 H 0.052 0.948 46 H 0.089 0.911 47 H 0.021 0.979 48 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.335 -14.349 21.911 26.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.061 3.939 3 H 0.084 0.916 4 C -0.172 4.172 5 C 0.046 3.954 6 H 0.105 0.895 7 N -0.368 5.368 8 C 0.289 3.711 9 O -0.411 6.411 10 C -0.031 4.031 11 N -0.350 5.350 12 C 0.358 3.642 13 O -0.414 6.414 14 C -0.059 4.059 15 C -0.132 4.132 16 C -0.109 4.109 17 C -0.170 4.170 18 C -0.060 4.060 19 N -0.167 5.167 20 C -0.188 4.188 21 C 0.047 3.953 22 N -0.306 5.306 23 C -0.383 4.383 24 H 0.083 0.917 25 C -0.196 4.196 26 N -0.544 5.544 27 Si 0.732 3.268 28 H -0.211 1.211 29 H -0.217 1.217 30 H -0.209 1.209 31 H 0.068 0.932 32 H 0.055 0.945 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.082 0.918 36 H 0.232 0.768 37 H 0.118 0.882 38 H 0.119 0.881 39 H 0.264 0.736 40 H 0.167 0.833 41 H 0.161 0.839 42 H 0.159 0.841 43 H 0.182 0.818 44 H 0.074 0.926 45 H 0.071 0.929 46 H 0.107 0.893 47 H 0.040 0.960 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -3.512 -13.914 21.052 25.478 hybrid contribution 0.739 -0.314 -0.047 0.805 sum -2.773 -14.228 21.005 25.521 Atomic orbital electron populations 1.22304 0.98683 1.01102 1.00107 1.20442 0.91789 0.95141 0.86496 0.91617 1.22305 1.01265 0.94012 0.99664 1.21162 0.99894 0.91374 0.82930 0.89519 1.46250 1.34553 1.26655 1.29352 1.20372 0.83449 0.81463 0.85818 1.90732 1.27971 1.65387 1.56989 1.21165 0.96302 0.88417 0.97174 1.45554 1.35305 1.25537 1.28603 1.17840 0.83403 0.82037 0.80933 1.90793 1.31096 1.72654 1.46813 1.21065 0.94906 0.96254 0.93635 1.22141 0.99921 0.93946 0.97221 1.21655 0.93884 0.96328 0.99011 1.22430 0.98383 1.00737 0.95487 1.22876 0.97248 0.89581 0.96258 1.67607 1.03396 1.18249 1.27416 1.22578 1.00219 0.99165 0.96805 1.20749 0.97744 0.82897 0.93878 1.44156 1.63905 1.03390 1.19142 1.19114 1.22288 1.10189 0.86735 0.91695 1.25048 0.97702 1.00004 0.96805 1.70028 1.31741 1.35604 1.17033 0.86383 0.81638 0.78323 0.80480 1.21082 1.21694 1.20915 0.93217 0.94498 0.92579 0.92520 0.91776 0.76848 0.88199 0.88131 0.73570 0.83314 0.83948 0.84073 0.81774 0.92607 0.92905 0.89258 0.96049 0.93551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.07 9.03 37.16 0.34 -2.73 16 2 C 0.17 3.35 3.28 -67.60 -0.22 3.13 16 3 H 0.07 1.29 7.93 -51.93 -0.41 0.88 16 4 C -0.13 -2.12 5.03 -26.61 -0.13 -2.25 16 5 C 0.15 2.48 2.21 -67.89 -0.15 2.32 16 6 H 0.09 1.63 5.94 -51.93 -0.31 1.32 16 7 N -0.72 -9.32 5.08 -53.77 -0.27 -9.60 16 8 C 0.50 6.92 7.86 -10.99 -0.09 6.84 16 9 O -0.53 -9.39 15.33 5.56 0.09 -9.30 16 10 C 0.10 1.06 6.15 -5.19 -0.03 1.03 16 11 N -0.70 -8.52 5.52 -62.32 -0.34 -8.86 16 12 C 0.57 7.15 7.81 -12.18 -0.10 7.05 16 13 O -0.54 -7.59 16.32 5.35 0.09 -7.51 16 14 C 0.08 0.86 6.75 -83.01 -0.56 0.30 16 15 C -0.11 -0.94 9.63 -39.06 -0.38 -1.31 16 16 C -0.08 -0.48 10.17 -39.31 -0.40 -0.88 16 17 C -0.15 -0.81 10.11 -39.32 -0.40 -1.21 16 18 C 0.10 0.74 11.18 -17.56 -0.20 0.54 16 19 N -0.46 -4.80 9.54 -9.80 -0.09 -4.89 16 20 C -0.15 -2.86 5.65 -26.61 -0.15 -3.01 16 21 C 0.17 4.11 4.90 -3.71 -0.02 4.09 16 22 N -0.58 -14.01 2.70 -164.77 -0.45 -14.46 16 23 C -0.25 -6.76 9.59 -15.06 -0.14 -6.90 16 24 H 0.07 1.69 7.89 -52.49 -0.41 1.28 16 25 C 0.00 0.09 4.91 -17.43 -0.09 0.01 16 26 N -0.90 -25.89 11.19 55.49 0.62 -25.26 16 27 Si 0.90 21.47 29.59 -169.99 -5.03 16.44 16 28 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 29 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 30 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 31 H 0.05 0.97 5.74 -51.93 -0.30 0.67 16 32 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 36 H 0.40 3.92 8.60 -40.82 -0.35 3.57 16 37 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16 38 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.42 5.57 6.77 -40.82 -0.28 5.30 16 40 H 0.15 1.15 7.64 -52.48 -0.40 0.75 16 41 H 0.14 0.41 8.06 -52.48 -0.42 -0.02 16 42 H 0.14 0.33 8.06 -52.48 -0.42 -0.09 16 43 H 0.17 0.79 8.06 -52.49 -0.42 0.37 16 44 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 45 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 46 H 0.09 2.39 6.04 -51.92 -0.31 2.07 16 47 H 0.02 0.54 7.50 -51.93 -0.39 0.15 16 48 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 392.52 15.07 5.92 5.92 Total: -1.00 -33.32 392.52 -9.14 -42.46 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: -6.95 Total: 8.04 kcal Atomic # 6 Polarization: 9.73 SS G_CDS: -2.71 Total: 7.02 kcal Atomic # 7 Polarization: -62.54 SS G_CDS: -0.53 Total: -63.07 kcal Atomic # 8 Polarization: -16.98 SS G_CDS: 0.17 Total: -16.81 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.03 Total: 16.44 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -33.32 -9.14 -42.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274662781.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.653 kcal (2) G-P(sol) polarization free energy of solvation -33.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds