Wall clock time and date at job start Wed Apr 1 2020 04:32:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.58430 * 2 1 4 4 C 1.53192 * 109.70186 * 120.35332 * 2 1 3 5 5 C 1.53041 * 109.31230 * 65.22526 * 4 2 1 6 6 H 1.09004 * 109.44826 * 301.34639 * 5 4 2 7 7 N 1.46500 * 109.45869 * 181.38715 * 5 4 2 8 8 C 1.34772 * 120.00333 * 154.93153 * 7 5 4 9 9 O 1.21280 * 119.99779 * 359.97438 * 8 7 5 10 10 C 1.50703 * 120.00252 * 179.97438 * 8 7 5 11 11 N 1.46506 * 109.47110 * 179.97438 * 10 8 7 12 12 C 1.34773 * 119.99941 * 179.97438 * 11 10 8 13 13 O 1.21522 * 119.99928 * 0.02562 * 12 11 10 14 14 C 1.48172 * 120.00016 * 179.97438 * 12 11 10 15 15 C 1.39304 * 119.72316 * 180.02562 * 14 12 11 16 16 C 1.38589 * 119.05940 * 180.02562 * 15 14 12 17 17 C 1.38621 * 118.48590 * 359.97438 * 16 15 14 18 18 C 1.38550 * 119.35640 * 0.02562 * 17 16 15 19 19 N 1.31532 * 120.90432 * 359.97438 * 18 17 16 20 20 C 1.53032 * 109.54193 * 61.36427 * 5 4 2 21 21 C 1.53194 * 109.31042 * 298.63687 * 20 5 4 22 22 N 1.46922 * 108.78007 * 54.63476 * 21 20 5 23 23 C 1.36930 * 120.63503 * 126.41345 * 22 21 20 24 24 H 1.07997 * 120.00399 * 207.67724 * 23 22 21 25 25 C 1.38812 * 120.00077 * 27.67680 * 23 22 21 26 26 N 1.31620 * 119.99689 * 17.35426 * 25 23 22 27 27 Si 1.86804 * 120.00363 * 197.35663 * 25 23 22 28 28 H 1.48495 * 109.47095 * 59.99866 * 27 25 23 29 29 H 1.48499 * 109.47210 * 179.97438 * 27 25 23 30 30 H 1.48496 * 109.46715 * 299.99863 * 27 25 23 31 31 H 1.09005 * 109.46949 * 180.28611 * 1 2 3 32 32 H 1.08993 * 109.47041 * 300.28901 * 1 2 3 33 33 H 1.08996 * 109.47059 * 60.28968 * 1 2 3 34 34 H 1.08996 * 109.49566 * 305.26714 * 4 2 1 35 35 H 1.09001 * 109.49550 * 185.17140 * 4 2 1 36 36 H 0.97006 * 120.00126 * 334.92395 * 7 5 4 37 37 H 1.09000 * 109.46956 * 59.99855 * 10 8 7 38 38 H 1.08997 * 109.47066 * 299.99571 * 10 8 7 39 39 H 0.97001 * 119.99479 * 0.02562 * 11 10 8 40 40 H 1.08008 * 120.46821 * 0.02562 * 15 14 12 41 41 H 1.08007 * 120.75480 * 179.97438 * 16 15 14 42 42 H 1.08006 * 120.32261 * 179.97438 * 17 16 15 43 43 H 1.07997 * 119.55432 * 179.97438 * 18 17 16 44 44 H 1.09005 * 109.50127 * 58.58094 * 20 5 4 45 45 H 1.08998 * 109.49815 * 178.68340 * 20 5 4 46 46 H 1.09008 * 109.58685 * 174.42476 * 21 20 5 47 47 H 1.09004 * 109.58691 * 294.84531 * 21 20 5 48 48 H 0.97007 * 119.99749 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0465 -0.7288 1.2445 5 6 1.6473 -2.2043 1.1691 6 1 0.5624 -2.2837 1.0995 7 7 2.1110 -2.8975 2.3736 8 6 1.4856 -4.0164 2.7901 9 8 0.5387 -4.4491 2.1680 10 6 1.9630 -4.7297 4.0288 11 7 1.1246 -5.9072 4.2679 12 6 1.3675 -6.7034 5.3278 13 8 2.2817 -6.4444 6.0854 14 6 0.5193 -7.8939 5.5700 15 6 0.7752 -8.7126 6.6676 16 6 -0.0264 -9.8229 6.8807 17 6 -1.0569 -10.0754 5.9885 18 6 -1.2539 -9.2181 4.9181 19 7 -0.4779 -8.1712 4.7393 20 6 2.2857 -2.8449 -0.0654 21 6 1.7720 -2.1400 -1.3248 22 7 2.0226 -0.6981 -1.1954 23 6 2.7019 -0.0177 -2.1703 24 1 3.2656 0.8682 -1.9178 25 6 2.6661 -0.4666 -3.4834 26 7 1.7347 -1.3154 -3.8634 27 14 3.9397 0.1338 -4.7109 28 1 5.2968 -0.2424 -4.2401 29 1 3.6846 -0.4902 -6.0341 30 1 3.8503 1.6110 -4.8343 31 1 -0.3633 -1.0277 0.0051 32 1 -0.3633 0.5183 0.8873 33 1 -0.3633 0.5093 -0.8925 34 1 1.6106 -0.2790 2.1366 35 1 3.1326 -0.6476 1.2892 36 1 2.8682 -2.5512 2.8714 37 1 1.8964 -4.0570 4.8839 38 1 2.9982 -5.0422 3.8920 39 1 0.3951 -6.1140 3.6629 40 1 1.5869 -8.4854 7.3429 41 1 0.1478 -10.4765 7.7227 42 1 -1.6995 -10.9325 6.1261 43 1 -2.0555 -9.4120 4.2208 44 1 3.3696 -2.7437 -0.0085 45 1 2.0201 -3.9012 -0.1056 46 1 2.2970 -2.5251 -2.1990 47 1 0.7017 -2.3167 -1.4316 48 1 1.7098 -1.6294 -4.7809 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274662781.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:32:06 Heat of formation + Delta-G solvation = -38.033595 kcal Electronic energy + Delta-G solvation = -29657.387760 eV Core-core repulsion = 25518.777287 eV Total energy + Delta-G solvation = -4138.610473 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.179 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.74366 -41.10976 -39.97600 -39.25797 -36.17445 -35.60741 -34.33904 -33.56981 -32.61362 -32.41799 -31.48133 -29.28598 -28.23026 -26.18663 -25.36266 -24.41667 -23.72941 -23.28230 -21.83290 -21.61329 -20.23351 -19.58316 -18.72147 -17.98459 -17.60821 -17.38745 -17.02100 -16.90664 -16.54596 -16.31483 -15.99034 -15.91677 -15.52324 -15.47157 -15.05605 -14.75183 -14.69400 -14.34859 -14.26217 -14.14007 -14.02645 -13.90912 -13.55079 -13.14494 -12.92086 -12.91076 -12.62494 -12.55164 -12.30048 -12.05296 -12.01998 -11.77259 -11.56465 -11.49195 -11.21300 -10.96323 -10.91882 -10.55888 -10.54329 -10.43600 -10.15154 -10.01350 -8.67817 -7.84928 -5.29421 -0.38426 0.25762 1.47566 1.48083 1.50130 1.56436 1.63071 1.67069 2.33714 2.52586 2.85920 3.10036 3.30384 3.55295 3.65925 3.80957 3.88235 3.97826 4.04950 4.08515 4.10608 4.28567 4.29190 4.30441 4.45757 4.50821 4.52915 4.71520 4.76540 4.77213 4.85621 4.89276 5.05880 5.08331 5.10898 5.14807 5.17565 5.18093 5.34607 5.45584 5.48790 5.57062 5.63659 5.69273 5.77250 6.24495 6.41695 6.48355 6.74842 6.99495 7.16326 7.16884 7.89159 8.40940 9.21426 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.021612 B = 0.001877 C = 0.001835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.265704 B =14915.168778 C =15254.067384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.159 3.841 3 H 0.070 0.930 4 C -0.118 4.118 5 C 0.162 3.838 6 H 0.066 0.934 7 N -0.703 5.703 8 C 0.507 3.493 9 O -0.575 6.575 10 C 0.103 3.897 11 N -0.701 5.701 12 C 0.571 3.429 13 O -0.561 6.561 14 C 0.046 3.954 15 C -0.118 4.118 16 C -0.079 4.079 17 C -0.134 4.134 18 C 0.085 3.915 19 N -0.486 5.486 20 C -0.133 4.133 21 C 0.184 3.816 22 N -0.599 5.599 23 C -0.257 4.257 24 H 0.072 0.928 25 C -0.054 4.054 26 N -0.936 5.936 27 Si 0.965 3.035 28 H -0.278 1.278 29 H -0.299 1.299 30 H -0.274 1.274 31 H 0.034 0.966 32 H 0.074 0.926 33 H 0.027 0.973 34 H 0.093 0.907 35 H 0.075 0.925 36 H 0.418 0.582 37 H 0.122 0.878 38 H 0.117 0.883 39 H 0.419 0.581 40 H 0.150 0.850 41 H 0.178 0.822 42 H 0.180 0.820 43 H 0.185 0.815 44 H 0.060 0.940 45 H 0.044 0.956 46 H 0.052 0.948 47 H -0.009 1.009 48 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.772 -14.883 24.924 29.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.052 3.948 3 H 0.088 0.912 4 C -0.158 4.158 5 C 0.057 3.943 6 H 0.084 0.916 7 N -0.354 5.354 8 C 0.294 3.706 9 O -0.455 6.455 10 C -0.023 4.023 11 N -0.354 5.354 12 C 0.358 3.642 13 O -0.440 6.440 14 C -0.091 4.091 15 C -0.139 4.139 16 C -0.104 4.104 17 C -0.153 4.153 18 C -0.075 4.075 19 N -0.198 5.198 20 C -0.173 4.173 21 C 0.057 3.943 22 N -0.321 5.321 23 C -0.387 4.387 24 H 0.090 0.910 25 C -0.249 4.249 26 N -0.582 5.582 27 Si 0.794 3.206 28 H -0.204 1.204 29 H -0.226 1.226 30 H -0.200 1.200 31 H 0.054 0.946 32 H 0.093 0.907 33 H 0.046 0.954 34 H 0.111 0.889 35 H 0.093 0.907 36 H 0.256 0.744 37 H 0.140 0.860 38 H 0.134 0.866 39 H 0.258 0.742 40 H 0.168 0.832 41 H 0.195 0.805 42 H 0.197 0.803 43 H 0.202 0.798 44 H 0.079 0.921 45 H 0.063 0.937 46 H 0.071 0.929 47 H 0.009 0.991 48 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -2.912 -14.413 24.124 28.252 hybrid contribution 0.461 -0.212 -0.936 1.065 sum -2.451 -14.625 23.187 27.523 Atomic orbital electron populations 1.22188 0.98212 1.00315 1.00539 1.20725 0.92184 0.95563 0.86327 0.91195 1.22136 1.02021 0.92726 0.98869 1.20753 0.98439 0.92085 0.83017 0.91584 1.45919 1.35064 1.26281 1.28160 1.20816 0.82598 0.81115 0.86112 1.90727 1.29898 1.66422 1.58413 1.21225 0.96612 0.88279 0.96201 1.45644 1.35268 1.25939 1.28558 1.18169 0.83281 0.82399 0.80392 1.90758 1.32203 1.73488 1.47535 1.20956 0.95970 0.96778 0.95356 1.22298 1.00484 0.94572 0.96503 1.22092 0.92957 0.95522 0.99847 1.22858 0.97930 1.00746 0.93784 1.23391 0.97314 0.89236 0.97555 1.67527 1.04134 1.19974 1.28210 1.22333 1.00369 0.98302 0.96309 1.20422 0.95463 0.83690 0.94689 1.44363 1.64246 1.03529 1.19965 1.19494 1.21872 1.09984 0.87355 0.91043 1.25804 0.99540 1.00836 0.98710 1.70202 1.33685 1.37485 1.16862 0.85374 0.79437 0.78005 0.77828 1.20409 1.22592 1.20013 0.94649 0.90690 0.95363 0.88875 0.90656 0.74428 0.85988 0.86552 0.74204 0.83246 0.80490 0.80289 0.79804 0.92079 0.93731 0.92942 0.99112 0.94341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.72 9.03 71.98 0.65 -5.07 16 2 C 0.16 6.09 3.28 44.98 0.15 6.23 16 3 H 0.07 2.62 7.93 -2.39 -0.02 2.60 16 4 C -0.12 -3.44 5.03 30.67 0.15 -3.29 16 5 C 0.16 5.16 2.21 45.02 0.10 5.26 16 6 H 0.07 2.46 5.94 -2.39 -0.01 2.44 16 7 N -0.70 -16.74 5.08 -442.42 -2.25 -18.98 16 8 C 0.51 13.39 7.86 87.66 0.69 14.08 16 9 O -0.58 -20.41 15.33 -3.03 -0.05 -20.46 16 10 C 0.10 2.12 6.15 85.63 0.53 2.65 16 11 N -0.70 -17.16 5.52 -469.37 -2.59 -19.75 16 12 C 0.57 14.34 7.81 86.88 0.68 15.02 16 13 O -0.56 -15.79 16.32 -3.78 -0.06 -15.85 16 14 C 0.05 1.00 6.75 41.91 0.28 1.29 16 15 C -0.12 -1.86 9.63 22.61 0.22 -1.65 16 16 C -0.08 -0.69 10.17 22.45 0.23 -0.46 16 17 C -0.13 -1.03 10.11 22.44 0.23 -0.80 16 18 C 0.08 1.13 11.18 84.81 0.95 2.08 16 19 N -0.49 -10.23 9.54 -184.92 -1.76 -11.99 16 20 C -0.13 -5.20 5.65 30.67 0.17 -5.03 16 21 C 0.18 9.09 4.90 86.36 0.42 9.52 16 22 N -0.60 -29.09 2.70 -675.21 -1.82 -30.92 16 23 C -0.26 -13.80 9.59 84.03 0.81 -13.00 16 24 H 0.07 3.68 7.89 -2.91 -0.02 3.66 16 25 C -0.05 -3.00 4.91 84.86 0.42 -2.58 16 26 N -0.94 -56.22 11.19 21.65 0.24 -55.98 16 27 Si 0.97 44.95 29.59 68.60 2.03 46.98 16 28 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 29 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 30 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 31 H 0.03 1.40 5.74 -2.38 -0.01 1.39 16 32 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 33 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 35 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 36 H 0.42 6.79 8.60 -92.70 -0.80 5.99 16 37 H 0.12 2.00 8.14 -2.39 -0.02 1.98 16 38 H 0.12 2.07 8.14 -2.39 -0.02 2.05 16 39 H 0.42 11.33 6.77 -92.71 -0.63 10.70 16 40 H 0.15 2.23 7.64 -2.91 -0.02 2.20 16 41 H 0.18 0.28 8.06 -2.91 -0.02 0.25 16 42 H 0.18 -0.01 8.06 -2.91 -0.02 -0.03 16 43 H 0.19 1.47 8.06 -2.91 -0.02 1.45 16 44 H 0.06 2.32 8.14 -2.38 -0.02 2.30 16 45 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 46 H 0.05 2.96 6.04 -2.38 -0.01 2.95 16 47 H -0.01 -0.50 7.50 -2.38 -0.02 -0.52 16 48 H 0.25 14.54 8.31 -92.70 -0.77 13.77 16 Total: -1.00 -77.13 392.52 -0.02 -77.15 By element: Atomic # 1 Polarization: 25.96 SS G_CDS: -0.42 Total: 25.54 kcal Atomic # 6 Polarization: 17.59 SS G_CDS: 6.67 Total: 24.26 kcal Atomic # 7 Polarization: -129.43 SS G_CDS: -8.18 Total: -137.62 kcal Atomic # 8 Polarization: -36.20 SS G_CDS: -0.11 Total: -36.31 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Total: -77.13 -0.02 -77.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274662781.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.113 kcal (2) G-P(sol) polarization free energy of solvation -77.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds