Wall clock time and date at job start Wed Apr 1 2020 06:05:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46503 * 109.46910 * 2 1 4 4 C 1.46498 * 120.00074 * 269.99903 * 3 2 1 5 5 C 1.50695 * 109.47221 * 270.00626 * 4 3 2 6 6 H 1.08003 * 120.00341 * 359.97438 * 5 4 3 7 7 C 1.37879 * 120.00304 * 180.02562 * 5 4 3 8 8 N 1.31515 * 119.99646 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 120.00293 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47154 * 90.00213 * 9 7 5 11 11 H 1.48499 * 109.47037 * 209.99920 * 9 7 5 12 12 H 1.48502 * 109.47269 * 329.99761 * 9 7 5 13 13 C 1.34774 * 119.99976 * 90.00373 * 3 2 1 14 14 O 1.21581 * 120.00196 * 179.97438 * 13 3 2 15 15 N 1.34775 * 119.99628 * 359.97438 * 13 3 2 16 16 C 1.39947 * 119.99585 * 185.61009 * 15 13 3 17 17 C 1.38932 * 120.03691 * 24.83488 * 16 15 13 18 18 C 1.38143 * 120.07124 * 179.97438 * 17 16 15 19 19 C 1.38179 * 120.13821 * 359.78649 * 18 17 16 20 20 C 1.38896 * 120.06993 * 0.46245 * 19 18 17 21 21 N 1.39936 * 120.03889 * 179.79218 * 20 19 18 22 22 C 1.47052 * 125.41414 * 89.72072 * 21 20 19 23 23 C 1.54102 * 103.86966 * 180.02562 * 22 21 20 24 24 N 1.47054 * 103.85887 * 0.02562 * 23 22 21 25 25 C 1.33954 * 125.40967 * 269.72755 * 21 20 19 26 26 O 1.21585 * 123.04252 * 359.97438 * 25 21 20 27 27 C 1.38729 * 120.03535 * 204.80583 * 16 15 13 28 28 C 1.50701 * 120.06509 * 0.04811 * 27 16 15 29 29 H 1.09000 * 109.47080 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47003 * 300.00082 * 1 2 3 31 31 H 1.09004 * 109.47344 * 59.99748 * 1 2 3 32 32 H 1.09004 * 109.46855 * 240.00408 * 2 1 3 33 33 H 1.08992 * 109.46949 * 120.00086 * 2 1 3 34 34 H 1.09005 * 109.47062 * 30.00068 * 4 3 2 35 35 H 1.08995 * 109.47443 * 150.00092 * 4 3 2 36 36 H 0.97003 * 120.00018 * 179.97438 * 8 7 5 37 37 H 0.96994 * 120.00593 * 5.60868 * 15 13 3 38 38 H 1.08006 * 119.96356 * 359.97184 * 17 16 15 39 39 H 1.07997 * 119.93007 * 180.02562 * 18 17 16 40 40 H 1.07999 * 119.96840 * 180.23517 * 19 18 17 41 41 H 1.09002 * 110.54418 * 61.40648 * 22 21 20 42 42 H 1.08997 * 110.67302 * 298.66438 * 22 21 20 43 43 H 1.08999 * 110.54564 * 118.59168 * 23 22 21 44 44 H 1.08997 * 110.55181 * 241.41082 * 23 22 21 45 45 H 0.97000 * 125.41505 * 179.97438 * 24 23 22 46 46 H 1.08998 * 109.47091 * 269.97586 * 28 27 16 47 47 H 1.08995 * 109.47538 * 29.97432 * 28 27 16 48 48 H 1.09000 * 109.46984 * 149.98097 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6857 1.8350 -1.7038 6 1 4.3428 1.2308 -1.0959 7 6 4.1494 2.3905 -2.8775 8 7 3.3493 3.1266 -3.6175 9 14 5.9137 2.0975 -3.4164 10 1 5.9775 0.8768 -4.2598 11 1 6.3927 3.2652 -4.1989 12 1 6.7736 1.9175 -2.2192 13 6 2.2430 2.0166 1.1672 14 8 2.6487 3.1627 1.1672 15 7 2.0180 1.3813 2.3343 16 6 2.1379 2.0758 3.5434 17 6 1.9737 3.4551 3.5723 18 6 2.0914 4.1413 4.7655 19 6 2.3683 3.4582 5.9343 20 6 2.5386 2.0799 5.9112 21 7 2.8233 1.3893 7.0945 22 6 1.8235 0.8256 8.0137 23 6 2.6690 0.1864 9.1323 24 7 4.0555 0.4584 8.7250 25 6 4.0499 1.1369 7.5700 26 8 5.0661 1.4921 7.0047 27 6 2.4202 1.3876 4.7144 28 6 2.5993 -0.1084 4.6865 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5138 0.8899 34 1 1.5817 1.6877 -2.0284 35 1 2.0955 3.1411 -1.1384 36 1 3.6756 3.5177 -4.4431 37 1 1.7729 0.4428 2.3364 38 1 1.7539 3.9914 2.6610 39 1 1.9630 5.2134 4.7855 40 1 2.4560 3.9969 6.8662 41 1 1.2226 0.0695 7.5084 42 1 1.1860 1.6118 8.4181 43 1 2.4531 0.6571 10.0915 44 1 2.4883 -0.8873 9.1825 45 1 4.8484 0.1889 9.2145 46 1 1.6366 -0.5927 4.8501 47 1 2.9969 -0.4088 3.7171 48 1 3.2938 -0.4059 5.4722 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000489896310.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:05:28 Heat of formation + Delta-G solvation = 5.511685 kcal Electronic energy + Delta-G solvation = -30864.691333 eV Core-core repulsion = 26727.969125 eV Total energy + Delta-G solvation = -4136.722208 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.179 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.52662 -40.33094 -38.56492 -36.51938 -35.61502 -34.83025 -33.96960 -32.75431 -31.76870 -30.19449 -29.61173 -28.67633 -27.14516 -26.54749 -23.79288 -23.27693 -23.10173 -22.78188 -21.23892 -20.64927 -19.14061 -18.19303 -17.80431 -16.99540 -16.84690 -16.40312 -15.92128 -15.71851 -15.24414 -14.97173 -14.71803 -14.49436 -14.33799 -14.05001 -13.99875 -13.64252 -13.60168 -13.28628 -13.14086 -12.81050 -12.69998 -12.65686 -12.46318 -12.07903 -11.97145 -11.77605 -11.48299 -11.31870 -11.19882 -10.93427 -10.81433 -10.53617 -10.47076 -10.14490 -10.09012 -9.61591 -9.58834 -9.23969 -8.97809 -8.53304 -8.41889 -7.92623 -7.55898 -6.03104 -4.07465 1.34463 1.47280 2.28026 2.93586 3.17180 3.32246 3.39420 3.45567 3.56584 3.65604 3.99715 4.04731 4.34207 4.47107 4.49972 4.83497 4.86624 4.98504 4.99903 5.20061 5.21208 5.27220 5.31262 5.37770 5.49946 5.52619 5.53283 5.56078 5.64018 5.70939 5.78348 5.92698 6.05194 6.15700 6.38475 6.39439 6.43589 6.57918 6.68918 6.76846 6.84250 6.93062 7.22263 7.29523 7.34191 7.49573 7.65734 7.94697 8.23811 8.41827 8.54690 8.93050 9.20633 9.57993 11.04778 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.015234 B = 0.002656 C = 0.002557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1837.593212 B =10538.116408 C =10945.858027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.107 3.893 3 N -0.605 5.605 4 C 0.261 3.739 5 C -0.527 4.527 6 H 0.057 0.943 7 C 0.062 3.938 8 N -0.895 5.895 9 Si 0.897 3.103 10 H -0.281 1.281 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.698 3.302 14 O -0.563 6.563 15 N -0.690 5.690 16 C 0.194 3.806 17 C -0.121 4.121 18 C -0.094 4.094 19 C -0.136 4.136 20 C 0.178 3.822 21 N -0.585 5.585 22 C 0.094 3.906 23 C 0.094 3.906 24 N -0.744 5.744 25 C 0.700 3.300 26 O -0.570 6.570 27 C -0.121 4.121 28 C -0.106 4.106 29 H 0.060 0.940 30 H 0.050 0.950 31 H 0.064 0.936 32 H 0.087 0.913 33 H 0.055 0.945 34 H 0.035 0.965 35 H 0.046 0.954 36 H 0.263 0.737 37 H 0.401 0.599 38 H 0.155 0.845 39 H 0.129 0.871 40 H 0.119 0.881 41 H 0.084 0.916 42 H 0.085 0.915 43 H 0.083 0.917 44 H 0.083 0.917 45 H 0.430 0.570 46 H 0.066 0.934 47 H 0.065 0.935 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.772 -9.314 25.336 28.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.018 4.018 3 N -0.340 5.340 4 C 0.142 3.858 5 C -0.566 4.566 6 H 0.075 0.925 7 C -0.140 4.140 8 N -0.534 5.534 9 Si 0.725 3.275 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.400 3.600 14 O -0.439 6.439 15 N -0.338 5.338 16 C 0.096 3.904 17 C -0.142 4.142 18 C -0.113 4.113 19 C -0.157 4.157 20 C 0.088 3.912 21 N -0.320 5.320 22 C -0.029 4.029 23 C -0.031 4.031 24 N -0.407 5.407 25 C 0.401 3.599 26 O -0.446 6.446 27 C -0.125 4.125 28 C -0.163 4.163 29 H 0.079 0.921 30 H 0.070 0.930 31 H 0.083 0.917 32 H 0.106 0.894 33 H 0.073 0.927 34 H 0.053 0.947 35 H 0.064 0.936 36 H 0.073 0.927 37 H 0.239 0.761 38 H 0.173 0.827 39 H 0.147 0.853 40 H 0.137 0.863 41 H 0.102 0.898 42 H 0.103 0.897 43 H 0.101 0.899 44 H 0.101 0.899 45 H 0.272 0.728 46 H 0.085 0.915 47 H 0.084 0.916 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -9.011 -8.143 24.569 27.407 hybrid contribution 1.167 -0.884 -0.038 1.464 sum -7.845 -9.027 24.531 27.291 Atomic orbital electron populations 1.22245 0.96548 1.01494 1.02606 1.21377 0.93668 0.84345 1.02394 1.47652 1.66747 1.13322 1.06260 1.19244 0.96260 0.93515 0.76831 1.21457 0.96981 1.31921 1.06215 0.92495 1.24913 0.97837 0.94878 0.96387 1.69928 1.35687 1.33426 1.14371 0.86504 0.84754 0.77633 0.78601 1.20689 1.21069 1.19864 1.15923 0.79039 0.84986 0.80048 1.90861 1.51018 1.16706 1.85356 1.43037 1.72925 1.14057 1.03795 1.17218 0.97525 0.91681 0.84022 1.21667 0.99852 0.92899 0.99739 1.20898 0.99196 0.99860 0.91376 1.21117 1.02954 0.92757 0.98829 1.16371 1.02763 0.89525 0.82571 1.44095 1.05802 1.59241 1.22817 1.22456 0.92167 0.98664 0.89609 1.22350 0.81386 1.01346 0.98062 1.45061 1.08692 1.61676 1.25237 1.15891 0.83784 0.79040 0.81218 1.91028 1.33281 1.57992 1.62274 1.19602 1.04678 0.96501 0.91765 1.20574 1.01581 0.91200 1.02899 0.92081 0.93046 0.91721 0.89417 0.92659 0.94715 0.93646 0.92720 0.76131 0.82718 0.85331 0.86254 0.89800 0.89721 0.89895 0.89885 0.72835 0.91486 0.91642 0.91640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.18 10.24 37.16 0.38 -1.80 16 2 C 0.11 1.66 5.94 -4.04 -0.02 1.63 16 3 N -0.61 -12.69 2.46 -180.81 -0.44 -13.13 16 4 C 0.26 6.74 5.16 -5.20 -0.03 6.71 16 5 C -0.53 -15.01 9.39 -34.44 -0.32 -15.34 16 6 H 0.06 1.64 7.81 -52.48 -0.41 1.23 16 7 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 8 N -0.90 -26.61 13.29 55.43 0.74 -25.87 16 9 Si 0.90 22.26 29.54 -169.99 -5.02 17.24 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 12 H -0.27 -6.87 7.11 56.52 0.40 -6.47 16 13 C 0.70 14.88 8.08 -86.92 -0.70 14.18 16 14 O -0.56 -14.30 13.08 5.29 0.07 -14.23 16 15 N -0.69 -11.47 4.85 -14.24 -0.07 -11.54 16 16 C 0.19 3.17 6.41 -83.71 -0.54 2.64 16 17 C -0.12 -2.04 8.71 -39.36 -0.34 -2.38 16 18 C -0.09 -1.32 10.03 -39.64 -0.40 -1.72 16 19 C -0.14 -1.81 9.96 -39.36 -0.39 -2.20 16 20 C 0.18 2.43 5.41 -83.72 -0.45 1.98 16 21 N -0.58 -6.59 2.07 -118.27 -0.24 -6.84 16 22 C 0.09 0.57 7.62 -3.17 -0.02 0.54 16 23 C 0.09 0.39 8.06 -3.16 -0.03 0.37 16 24 N -0.74 -5.97 6.37 -64.70 -0.41 -6.38 16 25 C 0.70 9.21 8.00 -88.39 -0.71 8.50 16 26 O -0.57 -10.64 17.65 5.29 0.09 -10.55 16 27 C -0.12 -1.73 5.91 -104.25 -0.62 -2.34 16 28 C -0.11 -1.24 9.20 36.01 0.33 -0.90 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.09 1.42 8.07 -51.93 -0.42 1.00 16 33 H 0.06 0.71 6.29 -51.93 -0.33 0.38 16 34 H 0.03 0.90 8.07 -51.93 -0.42 0.48 16 35 H 0.05 1.32 7.42 -51.93 -0.39 0.94 16 36 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 37 H 0.40 5.42 5.09 -40.82 -0.21 5.21 16 38 H 0.16 2.97 5.78 -52.48 -0.30 2.66 16 39 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 40 H 0.12 1.37 8.06 -52.49 -0.42 0.94 16 41 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 44 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 45 H 0.43 2.71 8.96 -40.82 -0.37 2.34 16 46 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.06 0.79 6.98 -51.93 -0.36 0.43 16 48 H 0.06 0.81 6.98 -51.93 -0.36 0.45 16 LS Contribution 395.24 15.07 5.96 5.96 Total: -1.00 -38.23 395.24 -10.22 -48.45 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: -6.93 Total: 5.35 kcal Atomic # 6 Polarization: 15.50 SS G_CDS: -3.96 Total: 11.54 kcal Atomic # 7 Polarization: -63.34 SS G_CDS: -0.43 Total: -63.77 kcal Atomic # 8 Polarization: -24.94 SS G_CDS: 0.16 Total: -24.78 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -38.23 -10.22 -48.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000489896310.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.963 kcal (2) G-P(sol) polarization free energy of solvation -38.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.452 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds