Wall clock time and date at job start Wed Apr 1 2020 04:08:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50705 * 120.00051 * 2 1 4 4 N 1.46503 * 109.47122 * 124.41411 * 3 2 1 5 5 C 1.46499 * 119.99933 * 264.40143 * 4 3 2 6 6 C 1.50706 * 109.47001 * 270.00519 * 5 4 3 7 7 H 1.07999 * 120.00034 * 359.97438 * 6 5 4 8 8 C 1.37874 * 119.99799 * 180.02562 * 6 5 4 9 9 N 1.31520 * 120.00210 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 119.99905 * 179.97438 * 8 6 5 11 11 H 1.48492 * 109.47121 * 59.99872 * 10 8 6 12 12 H 1.48507 * 109.46951 * 180.02562 * 10 8 6 13 13 H 1.48494 * 109.46955 * 299.99415 * 10 8 6 14 14 C 1.34779 * 119.99998 * 84.40726 * 4 3 2 15 15 O 1.21281 * 119.99474 * 184.80397 * 14 4 3 16 16 C 1.50698 * 120.00281 * 4.79268 * 14 4 3 17 17 H 1.09006 * 110.85692 * 347.12514 * 16 14 4 18 18 C 1.54626 * 111.00348 * 223.31079 * 16 14 4 19 19 C 1.51277 * 104.19498 * 266.66365 * 18 16 14 20 20 O 1.21285 * 124.93940 * 164.01430 * 19 18 16 21 21 N 1.34416 * 110.11875 * 343.75328 * 19 18 16 22 22 C 1.46496 * 124.35017 * 179.61533 * 21 19 18 23 23 C 1.46764 * 111.29813 * 359.58410 * 21 19 18 24 24 H 1.08997 * 110.24950 * 257.92890 * 23 21 19 25 25 C 1.50706 * 110.24290 * 136.02257 * 23 21 19 26 26 C 1.35321 * 126.12364 * 328.48780 * 25 23 21 27 27 C 1.39868 * 107.91482 * 179.90664 * 26 25 23 28 28 N 1.30832 * 108.20676 * 0.35926 * 27 26 25 29 29 N 1.34946 * 126.12832 * 148.79597 * 25 23 21 30 30 C 1.46497 * 126.03768 * 359.97438 * 29 25 23 31 31 H 1.08006 * 119.99956 * 0.02562 * 1 2 3 32 32 H 1.07994 * 120.00331 * 180.02562 * 1 2 3 33 33 H 1.08000 * 120.00326 * 179.97438 * 2 1 3 34 34 H 1.08996 * 109.47183 * 4.40758 * 3 2 1 35 35 H 1.09006 * 109.46609 * 244.41321 * 3 2 1 36 36 H 1.08999 * 109.46856 * 29.99701 * 5 4 3 37 37 H 1.08998 * 109.46985 * 150.00086 * 5 4 3 38 38 H 0.96992 * 120.00371 * 179.97438 * 9 8 6 39 39 H 1.09005 * 110.48456 * 147.98377 * 18 16 14 40 40 H 1.08995 * 110.48271 * 25.34871 * 18 16 14 41 41 H 1.09001 * 109.47278 * 359.96507 * 22 21 19 42 42 H 1.09001 * 109.47356 * 119.96837 * 22 21 19 43 43 H 1.09005 * 109.47340 * 239.97048 * 22 21 19 44 44 H 1.07998 * 126.03950 * 0.02790 * 26 25 23 45 45 H 1.08002 * 125.89317 * 180.14330 * 27 26 25 46 46 H 1.09001 * 109.46933 * 89.99389 * 30 29 25 47 47 H 1.08995 * 109.47297 * 209.99890 * 30 29 25 48 48 H 1.08997 * 109.46925 * 329.99964 * 30 29 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9837 1.3377 1.1395 5 6 2.5798 1.9876 2.3888 6 6 2.9762 3.4411 2.3499 7 1 3.4790 3.8406 1.4816 8 6 2.6978 4.2604 3.4232 9 7 2.0859 3.7738 4.4808 10 14 3.1897 6.0619 3.3754 11 1 2.5173 6.7283 2.2313 12 1 2.7813 6.7204 4.6423 13 1 4.6621 6.1688 3.2149 14 6 4.2019 0.7700 1.0384 15 8 4.9297 0.7198 2.0072 16 6 4.6594 0.1972 -0.2783 17 1 3.8259 0.1139 -0.9759 18 6 5.3515 -1.1708 -0.0771 19 6 6.8205 -0.8294 0.0415 20 8 7.6736 -1.5737 0.4764 21 7 7.0435 0.4166 -0.4106 22 6 8.3567 1.0658 -0.4312 23 6 5.8027 1.0430 -0.8816 24 1 5.7575 1.0188 -1.9704 25 6 5.7161 2.4644 -0.3884 26 6 6.2210 2.9374 0.7746 27 6 5.9264 4.3027 0.8479 28 7 5.2617 4.6358 -0.2287 29 7 5.1163 3.4922 -1.0246 30 6 4.4335 3.4241 -2.3189 31 1 -0.5400 0.9354 -0.0004 32 1 -0.5400 -0.9352 0.0004 33 1 1.8500 -0.9353 0.0004 34 1 1.3578 2.1321 0.0790 35 1 2.6295 1.3978 -0.9270 36 1 1.4991 1.9088 2.5064 37 1 3.0734 1.4987 3.2287 38 1 1.8904 4.3501 5.2361 39 1 5.1781 -1.8163 -0.9381 40 1 4.9956 -1.6476 0.8361 41 1 9.1052 0.3843 -0.0269 42 1 8.6178 1.3251 -1.4572 43 1 8.3241 1.9709 0.1754 44 1 6.7583 2.3626 1.5145 45 1 6.1976 4.9665 1.6555 46 1 3.3811 3.1873 -2.1625 47 1 4.5183 4.3855 -2.8255 48 1 4.8931 2.6487 -2.9318 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359378708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:08:19 Heat of formation + Delta-G solvation = 61.398232 kcal Electronic energy + Delta-G solvation = -33489.758248 eV Core-core repulsion = 29355.459462 eV Total energy + Delta-G solvation = -4134.298785 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.179 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.59121 -40.07739 -38.72538 -36.37606 -35.66897 -33.40009 -33.07422 -32.62036 -32.02405 -30.53815 -28.04639 -26.90984 -26.56985 -26.41777 -25.50129 -23.77006 -21.89141 -20.86348 -20.12246 -20.05864 -19.21932 -18.41921 -17.35213 -16.79821 -16.45906 -16.20702 -15.63445 -15.35481 -15.18077 -14.91043 -14.65457 -14.36540 -14.24732 -13.96401 -13.61574 -13.42222 -13.29245 -12.99722 -12.72786 -12.64766 -12.42453 -12.34379 -12.24675 -12.14198 -11.85688 -11.74280 -11.69867 -11.49339 -11.24787 -11.08263 -10.88098 -10.56144 -10.23740 -10.13470 -9.77916 -9.59593 -9.29696 -9.03510 -8.83911 -8.69050 -8.37623 -8.01539 -7.69027 -5.98838 -4.01362 2.12701 2.33317 2.55473 2.78507 3.06984 3.21714 3.34331 3.36516 3.40784 3.43914 3.80811 4.20778 4.38101 4.48899 4.60443 4.68527 4.80524 4.85377 5.01134 5.13278 5.20778 5.22454 5.28540 5.34465 5.36474 5.40330 5.51832 5.53974 5.57433 5.58106 5.77090 5.83477 5.91201 6.05504 6.07706 6.24309 6.41905 6.62733 6.68239 6.81175 7.04763 7.07853 7.12335 7.33170 7.45972 7.55783 7.99717 8.11985 8.21892 8.28886 8.35596 8.93448 9.09505 9.63368 11.09784 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.009674 B = 0.005759 C = 0.004767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2893.610186 B = 4860.715051 C = 5872.674069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.173 4.173 3 C 0.138 3.862 4 N -0.585 5.585 5 C 0.250 3.750 6 C -0.518 4.518 7 H 0.070 0.930 8 C 0.062 3.938 9 N -0.898 5.898 10 Si 0.891 3.109 11 H -0.278 1.278 12 H -0.291 1.291 13 H -0.275 1.275 14 C 0.523 3.477 15 O -0.522 6.522 16 C -0.128 4.128 17 H 0.114 0.886 18 C -0.136 4.136 19 C 0.535 3.465 20 O -0.531 6.531 21 N -0.604 5.604 22 C 0.091 3.909 23 C 0.224 3.776 24 H 0.092 0.908 25 C 0.045 3.955 26 C -0.203 4.203 27 C 0.062 3.938 28 N -0.282 5.282 29 N -0.367 5.367 30 C 0.101 3.899 31 H 0.099 0.901 32 H 0.095 0.905 33 H 0.105 0.895 34 H 0.087 0.913 35 H 0.065 0.935 36 H 0.027 0.973 37 H 0.043 0.957 38 H 0.261 0.739 39 H 0.110 0.890 40 H 0.111 0.889 41 H 0.083 0.917 42 H 0.057 0.943 43 H 0.071 0.929 44 H 0.145 0.855 45 H 0.175 0.825 46 H 0.073 0.927 47 H 0.087 0.913 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.928 -5.868 -17.299 18.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.192 4.192 3 C 0.014 3.986 4 N -0.316 5.316 5 C 0.131 3.869 6 C -0.557 4.557 7 H 0.088 0.912 8 C -0.139 4.139 9 N -0.538 5.538 10 Si 0.720 3.280 11 H -0.204 1.204 12 H -0.217 1.217 13 H -0.200 1.200 14 C 0.308 3.692 15 O -0.398 6.398 16 C -0.151 4.151 17 H 0.132 0.868 18 C -0.177 4.177 19 C 0.323 3.677 20 O -0.408 6.408 21 N -0.338 5.338 22 C -0.050 4.050 23 C 0.117 3.883 24 H 0.110 0.890 25 C -0.082 4.082 26 C -0.233 4.233 27 C -0.123 4.123 28 N -0.103 5.103 29 N -0.151 5.151 30 C -0.041 4.041 31 H 0.117 0.883 32 H 0.113 0.887 33 H 0.123 0.877 34 H 0.106 0.894 35 H 0.084 0.916 36 H 0.045 0.955 37 H 0.061 0.939 38 H 0.071 0.929 39 H 0.128 0.872 40 H 0.129 0.871 41 H 0.101 0.899 42 H 0.075 0.925 43 H 0.090 0.910 44 H 0.163 0.837 45 H 0.192 0.808 46 H 0.091 0.909 47 H 0.105 0.895 48 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 3.143 -5.221 -17.096 18.150 hybrid contribution 0.227 0.574 0.555 0.830 sum 3.370 -4.646 -16.542 17.509 Atomic orbital electron populations 1.23833 0.95852 1.01825 1.00081 1.23466 0.96499 0.98921 1.00348 1.20554 0.93112 0.95411 0.89553 1.48123 1.13182 1.54762 1.15496 1.19280 0.95322 0.92356 0.79937 1.21530 1.37842 0.93593 1.02698 0.91167 1.24871 0.95302 0.98427 0.95294 1.69931 1.41847 1.35921 1.06079 0.86672 0.79258 0.85263 0.76841 1.20401 1.21677 1.20028 1.19505 0.82281 0.78990 0.88407 1.90697 1.53392 1.57286 1.38430 1.22650 0.98083 0.95359 0.99018 0.86810 1.22264 0.93094 0.96512 1.05824 1.20562 0.90661 0.80997 0.75446 1.90705 1.50945 1.53200 1.45936 1.47883 1.07589 1.15108 1.63256 1.21651 0.82713 0.98978 1.01687 1.19688 0.84074 0.87120 0.97458 0.88997 1.20538 1.01610 0.90144 0.95880 1.21158 1.09398 0.94867 0.97852 1.23670 0.96614 0.95970 0.96085 1.77348 1.21332 1.06221 1.05429 1.48180 1.44117 1.05711 1.17136 1.21768 0.97265 1.03894 0.81184 0.88318 0.88683 0.87672 0.89441 0.91647 0.95454 0.93940 0.92921 0.87163 0.87105 0.89877 0.92472 0.91010 0.83713 0.80770 0.90863 0.89461 0.90313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.06 14.32 29.02 0.42 -1.64 16 2 C -0.17 -2.15 9.47 -36.02 -0.34 -2.50 16 3 C 0.14 2.01 5.47 -5.19 -0.03 1.98 16 4 N -0.59 -11.24 2.45 -176.43 -0.43 -11.67 16 5 C 0.25 6.23 5.17 -5.19 -0.03 6.20 16 6 C -0.52 -13.83 9.39 -34.44 -0.32 -14.15 16 7 H 0.07 1.84 6.03 -52.49 -0.32 1.52 16 8 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 9 N -0.90 -26.45 13.29 55.43 0.74 -25.71 16 10 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 11 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 13 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 14 C 0.52 9.68 4.62 -10.99 -0.05 9.63 16 15 O -0.52 -12.03 14.46 5.56 0.08 -11.95 16 16 C -0.13 -1.67 2.92 -90.14 -0.26 -1.93 16 17 H 0.11 1.11 5.58 -51.93 -0.29 0.82 16 18 C -0.14 -1.70 6.17 -26.75 -0.16 -1.87 16 19 C 0.54 8.28 7.81 -10.86 -0.08 8.20 16 20 O -0.53 -10.00 17.35 5.55 0.10 -9.90 16 21 N -0.60 -8.27 2.96 -174.02 -0.52 -8.78 16 22 C 0.09 1.10 10.48 59.84 0.63 1.73 16 23 C 0.22 2.78 3.43 -68.16 -0.23 2.55 16 24 H 0.09 0.82 7.04 -51.93 -0.37 0.45 16 25 C 0.05 0.69 4.55 -82.26 -0.37 0.31 16 26 C -0.20 -3.70 6.86 -40.01 -0.27 -3.98 16 27 C 0.06 1.18 10.73 -17.37 -0.19 0.99 16 28 N -0.28 -5.22 12.20 30.62 0.37 -4.85 16 29 N -0.37 -5.48 4.01 -63.89 -0.26 -5.74 16 30 C 0.10 0.99 11.27 59.85 0.67 1.66 16 31 H 0.10 1.15 7.84 -52.48 -0.41 0.74 16 32 H 0.09 0.94 8.06 -52.49 -0.42 0.52 16 33 H 0.11 1.19 8.06 -52.49 -0.42 0.77 16 34 H 0.09 1.40 7.68 -51.93 -0.40 1.00 16 35 H 0.07 0.77 5.93 -51.93 -0.31 0.46 16 36 H 0.03 0.71 8.07 -51.93 -0.42 0.29 16 37 H 0.04 1.23 7.36 -51.93 -0.38 0.84 16 38 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 39 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.11 1.54 7.86 -51.93 -0.41 1.13 16 41 H 0.08 1.03 7.53 -51.93 -0.39 0.64 16 42 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.07 0.92 5.94 -51.93 -0.31 0.61 16 44 H 0.15 2.88 7.12 -52.49 -0.37 2.51 16 45 H 0.18 3.26 8.06 -52.49 -0.42 2.83 16 46 H 0.07 0.68 7.77 -51.93 -0.40 0.27 16 47 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 48 H 0.08 0.51 7.03 -51.93 -0.36 0.14 16 LS Contribution 391.40 15.07 5.90 5.90 Total: -1.00 -36.10 391.40 -6.59 -42.69 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: -6.81 Total: 4.28 kcal Atomic # 6 Polarization: 9.57 SS G_CDS: -0.73 Total: 8.84 kcal Atomic # 7 Polarization: -56.66 SS G_CDS: -0.10 Total: -56.76 kcal Atomic # 8 Polarization: -22.03 SS G_CDS: 0.18 Total: -21.85 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -36.10 -6.59 -42.69 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359378708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.086 kcal (2) G-P(sol) polarization free energy of solvation -36.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.688 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds