Wall clock time and date at job start Wed Apr 1 2020 04:36:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.36939 * 120.00158 * 2 1 4 4 H 1.07997 * 120.00005 * 204.47763 * 3 2 1 5 5 C 1.38818 * 119.99616 * 24.46996 * 3 2 1 6 6 N 1.31621 * 120.00255 * 7.44010 * 5 3 2 7 7 Si 1.86805 * 119.99647 * 187.43184 * 5 3 2 8 8 H 1.48496 * 109.47210 * 0.02562 * 7 5 3 9 9 H 1.48498 * 109.46757 * 120.00268 * 7 5 3 10 10 H 1.48501 * 109.46889 * 240.00388 * 7 5 3 11 11 C 1.46496 * 119.99976 * 179.97438 * 2 1 3 12 12 C 1.52999 * 109.47074 * 89.99983 * 11 2 1 13 13 C 1.53045 * 109.45984 * 174.99964 * 12 11 2 14 14 C 1.53194 * 109.31338 * 181.37195 * 13 12 11 15 15 N 1.46925 * 108.77524 * 305.36702 * 14 13 12 16 16 C 1.34772 * 120.62743 * 233.58372 * 15 14 13 17 17 O 1.21494 * 120.00452 * 10.95126 * 16 15 14 18 18 C 1.48344 * 119.99826 * 190.94355 * 16 15 14 19 19 C 1.39299 * 119.56967 * 187.77755 * 18 16 15 20 20 C 1.38447 * 119.18644 * 179.70708 * 19 18 16 21 21 C 1.39868 * 118.36048 * 0.27233 * 20 19 18 22 22 C 1.48003 * 120.46422 * 179.97438 * 21 20 19 23 23 N 1.34780 * 120.00123 * 179.97438 * 22 21 20 24 24 O 1.21534 * 119.99951 * 0.02562 * 22 21 20 25 25 C 1.39726 * 119.07571 * 0.02562 * 21 20 19 26 26 N 1.31417 * 120.71507 * 359.97125 * 25 21 20 27 27 C 1.46928 * 118.73733 * 53.85896 * 15 14 13 28 28 C 1.53036 * 109.45030 * 295.06212 * 12 11 2 29 29 H 1.08999 * 109.46928 * 274.13146 * 1 2 3 30 30 H 1.08998 * 109.46734 * 34.12879 * 1 2 3 31 31 H 1.08991 * 109.46817 * 154.12909 * 1 2 3 32 32 H 0.96993 * 119.99813 * 179.97438 * 6 5 3 33 33 H 1.09003 * 109.47176 * 330.00253 * 11 2 1 34 34 H 1.08994 * 109.47256 * 210.00452 * 11 2 1 35 35 H 1.09001 * 109.45949 * 55.03106 * 12 11 2 36 36 H 1.09004 * 109.49737 * 61.41726 * 13 12 11 37 37 H 1.08999 * 109.49933 * 301.32747 * 13 12 11 38 38 H 1.08997 * 109.58477 * 185.57628 * 14 13 12 39 39 H 1.09003 * 109.69695 * 65.22150 * 14 13 12 40 40 H 1.08000 * 120.40507 * 359.97438 * 19 18 16 41 41 H 1.08000 * 120.82063 * 180.30241 * 20 19 18 42 42 H 0.96999 * 119.99901 * 0.02562 * 23 22 21 43 43 H 0.96995 * 119.99928 * 180.02562 * 23 22 21 44 44 H 1.07996 * 119.64424 * 179.97438 * 25 21 20 45 45 H 1.08996 * 109.59041 * 65.92794 * 27 15 14 46 46 H 1.09001 * 109.58193 * 186.35205 * 27 15 14 47 47 H 1.09000 * 109.49922 * 298.57242 * 28 12 11 48 48 H 1.08995 * 109.50165 * 58.66873 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1570 1.2279 -0.3875 5 6 1.5492 2.3341 0.4980 6 7 0.3825 2.2573 1.1025 7 14 2.3969 3.9881 0.3103 8 1 3.6875 3.8050 -0.4010 9 1 1.5274 4.9041 -0.4706 10 1 2.6495 4.5700 1.6531 11 6 2.1976 -1.2687 0.0006 12 6 2.4525 -1.7110 -1.4417 13 6 3.3241 -2.9690 -1.4427 14 6 3.6057 -3.3892 -2.8887 15 7 2.3262 -3.5409 -3.5948 16 6 2.0320 -4.6845 -4.2446 17 8 2.7280 -5.6680 -4.0890 18 6 0.8580 -4.7423 -5.1496 19 6 0.4654 -5.9651 -5.6889 20 6 -0.6351 -6.0109 -6.5277 21 6 -1.3088 -4.8171 -6.8056 22 6 -2.4905 -4.8122 -7.6967 23 7 -3.1330 -3.6565 -7.9578 24 8 -2.8821 -5.8505 -8.1923 25 6 -0.8500 -3.6289 -6.2312 26 7 0.1990 -3.6274 -5.4396 27 6 1.3763 -2.4201 -3.5843 28 6 1.1173 -2.0129 -2.1258 29 1 -0.3633 0.0740 1.0250 30 1 -0.3633 0.8507 -0.5766 31 1 -0.3632 -0.9246 -0.4484 32 1 -0.0369 3.0596 1.4507 33 1 1.6084 -2.0282 0.5147 34 1 3.1499 -1.1382 0.5144 35 1 2.9648 -0.9140 -1.9808 36 1 2.8019 -3.7738 -0.9251 37 1 4.2655 -2.7599 -0.9347 38 1 4.1418 -4.3382 -2.8957 39 1 4.2073 -2.6260 -3.3825 40 1 1.0101 -6.8671 -5.4521 41 1 -0.9655 -6.9455 -6.9566 42 1 -2.8206 -2.8279 -7.5619 43 1 -3.9076 -3.6534 -8.5415 44 1 -1.3630 -2.7018 -6.4398 45 1 1.7987 -1.5779 -4.1321 46 1 0.4408 -2.7297 -4.0503 47 1 0.6159 -2.8266 -1.6019 48 1 0.4880 -1.1232 -2.1040 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732089310.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:49 Heat of formation + Delta-G solvation = 4.766084 kcal Electronic energy + Delta-G solvation = -30387.375478 eV Core-core repulsion = 26250.620938 eV Total energy + Delta-G solvation = -4136.754540 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.179 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.41141 -40.07676 -38.96733 -37.69167 -35.51279 -34.44418 -33.58128 -32.69709 -31.88234 -30.85377 -30.42090 -27.38530 -25.99937 -25.61098 -24.24449 -23.48486 -22.96743 -21.72455 -20.96406 -20.26990 -19.39006 -18.66208 -17.91958 -17.26762 -16.72684 -16.54210 -15.79050 -15.72407 -15.50784 -15.20609 -14.97739 -14.86900 -14.33546 -14.03344 -13.98450 -13.80873 -13.68328 -13.45812 -13.21423 -13.10069 -12.73087 -12.38252 -12.06633 -11.79300 -11.15928 -11.02512 -10.91202 -10.89173 -10.76807 -10.66291 -10.51128 -10.48402 -10.34438 -10.27704 -10.16468 -9.86787 -9.82743 -9.76097 -9.75088 -9.13781 -8.60844 -8.46804 -6.66071 -5.69304 -3.17300 -0.20465 0.65790 2.01464 2.72018 2.79412 2.88786 3.37116 3.42024 3.44499 3.46177 3.60566 4.15614 4.18903 4.33151 4.44917 4.50645 4.62586 5.06778 5.10222 5.18673 5.27225 5.38028 5.43736 5.45608 5.49646 5.52782 5.72458 5.76339 5.85744 5.94509 6.11368 6.16239 6.19623 6.21866 6.34166 6.44658 6.53643 6.57806 6.70624 6.71588 6.84126 6.92346 7.03804 7.09212 7.38451 7.42715 7.64997 7.77865 7.83851 7.97040 8.44400 9.28400 9.91518 10.41371 11.35139 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.012761 B = 0.002547 C = 0.002232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2193.744413 B =10992.757929 C =12544.234279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.163 3.837 2 N -0.602 5.602 3 C -0.248 4.248 4 H 0.067 0.933 5 C 0.000 4.000 6 N -0.911 5.911 7 Si 0.903 3.097 8 H -0.279 1.279 9 H -0.291 1.291 10 H -0.291 1.291 11 C 0.157 3.843 12 C -0.109 4.109 13 C -0.126 4.126 14 C 0.111 3.889 15 N -0.581 5.581 16 C 0.564 3.436 17 O -0.538 6.538 18 C 0.111 3.889 19 C -0.119 4.119 20 C -0.018 4.018 21 C -0.176 4.176 22 C 0.570 3.430 23 N -0.846 5.846 24 O -0.535 6.535 25 C 0.129 3.871 26 N -0.446 5.446 27 C 0.079 3.921 28 C -0.124 4.124 29 H 0.024 0.976 30 H 0.042 0.958 31 H -0.001 1.001 32 H 0.250 0.750 33 H 0.032 0.968 34 H 0.045 0.955 35 H 0.070 0.930 36 H 0.062 0.938 37 H 0.073 0.927 38 H 0.087 0.913 39 H 0.069 0.931 40 H 0.158 0.842 41 H 0.156 0.844 42 H 0.404 0.596 43 H 0.409 0.591 44 H 0.167 0.833 45 H 0.066 0.934 46 H 0.133 0.867 47 H 0.052 0.948 48 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.642 -13.179 -16.817 21.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.325 5.325 3 C -0.378 4.378 4 H 0.084 0.916 5 C -0.198 4.198 6 N -0.557 5.557 7 Si 0.733 3.267 8 H -0.204 1.204 9 H -0.217 1.217 10 H -0.218 1.218 11 C 0.030 3.970 12 C -0.131 4.131 13 C -0.165 4.165 14 C -0.011 4.011 15 N -0.312 5.312 16 C 0.350 3.650 17 O -0.415 6.415 18 C -0.026 4.026 19 C -0.139 4.139 20 C -0.044 4.044 21 C -0.182 4.182 22 C 0.355 3.645 23 N -0.411 5.411 24 O -0.412 6.412 25 C -0.031 4.031 26 N -0.158 5.158 27 C -0.042 4.042 28 C -0.162 4.162 29 H 0.043 0.957 30 H 0.061 0.939 31 H 0.018 0.982 32 H 0.061 0.939 33 H 0.051 0.949 34 H 0.063 0.937 35 H 0.088 0.912 36 H 0.080 0.920 37 H 0.091 0.909 38 H 0.105 0.895 39 H 0.087 0.913 40 H 0.175 0.825 41 H 0.174 0.826 42 H 0.233 0.767 43 H 0.241 0.759 44 H 0.184 0.816 45 H 0.084 0.916 46 H 0.150 0.850 47 H 0.071 0.929 48 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -3.170 -13.519 -16.484 21.553 hybrid contribution -0.105 0.926 -0.387 1.009 sum -3.274 -12.593 -16.871 21.305 Atomic orbital electron populations 1.20860 0.82811 0.95412 0.99068 1.43861 1.01750 1.00613 1.86271 1.19217 0.98803 0.86049 1.33749 0.91567 1.25084 0.97533 0.98601 0.98550 1.70066 1.16966 1.27193 1.41431 0.86203 0.78838 0.84365 0.77265 1.20388 1.21748 1.21784 1.20745 0.95900 0.88245 0.92145 1.21865 0.94916 0.95534 1.00750 1.21925 1.00832 0.98810 0.94913 1.21734 0.84275 1.02234 0.92899 1.48044 1.19045 1.14569 1.49543 1.17885 0.83617 0.83294 0.80232 1.90769 1.51376 1.34513 1.64877 1.21551 0.95094 0.89796 0.96131 1.22155 0.96456 0.99362 0.95968 1.21791 0.91635 0.98495 0.92512 1.21098 0.98824 0.96044 1.02206 1.18040 0.82473 0.83830 0.80192 1.43734 1.34447 1.09941 1.52960 1.90843 1.66728 1.31794 1.51795 1.23157 0.92256 0.97076 0.90592 1.67865 1.07183 1.28480 1.12239 1.23037 0.95062 0.88024 0.98122 1.22105 0.98588 1.01591 0.93893 0.95738 0.93877 0.98229 0.93917 0.94939 0.93682 0.91155 0.91967 0.90889 0.89469 0.91279 0.82451 0.82636 0.76651 0.75935 0.81555 0.91593 0.85050 0.92934 0.89357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.89 7.89 59.85 0.47 4.36 16 2 N -0.60 -14.61 2.75 -181.12 -0.50 -15.10 16 3 C -0.25 -6.65 9.66 -15.06 -0.15 -6.80 16 4 H 0.07 1.74 7.84 -52.49 -0.41 1.33 16 5 C 0.00 0.00 5.20 -17.43 -0.09 -0.09 16 6 N -0.91 -26.27 10.51 55.49 0.58 -25.68 16 7 Si 0.90 21.56 29.56 -169.99 -5.02 16.54 16 8 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 9 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 10 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 11 C 0.16 3.12 5.14 -4.04 -0.02 3.10 16 12 C -0.11 -1.79 2.36 -90.58 -0.21 -2.00 16 13 C -0.13 -1.73 5.36 -26.61 -0.14 -1.87 16 14 C 0.11 1.44 6.44 -3.71 -0.02 1.41 16 15 N -0.58 -7.82 2.97 -173.43 -0.51 -8.33 16 16 C 0.56 7.73 7.64 -12.10 -0.09 7.64 16 17 O -0.54 -8.50 15.79 5.37 0.08 -8.41 16 18 C 0.11 1.25 6.57 -82.93 -0.55 0.71 16 19 C -0.12 -1.11 9.62 -39.11 -0.38 -1.49 16 20 C -0.02 -0.15 9.71 -38.89 -0.38 -0.53 16 21 C -0.18 -1.37 5.90 -104.73 -0.62 -1.99 16 22 C 0.57 4.55 8.06 -12.26 -0.10 4.45 16 23 N -0.85 -3.42 8.83 30.57 0.27 -3.15 16 24 O -0.53 -6.30 17.25 5.34 0.09 -6.21 16 25 C 0.13 0.93 10.71 -17.17 -0.18 0.75 16 26 N -0.45 -4.46 6.15 -9.48 -0.06 -4.51 16 27 C 0.08 1.04 5.83 -3.49 -0.02 1.02 16 28 C -0.12 -1.89 4.42 -26.39 -0.12 -2.01 16 29 H 0.02 0.64 7.39 -51.93 -0.38 0.26 16 30 H 0.04 1.10 7.22 -51.93 -0.37 0.73 16 31 H 0.00 -0.01 6.14 -51.93 -0.32 -0.33 16 32 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 33 H 0.03 0.63 8.07 -51.93 -0.42 0.21 16 34 H 0.04 0.91 8.04 -51.93 -0.42 0.49 16 35 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 36 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.09 1.14 7.02 -51.93 -0.36 0.78 16 39 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.16 1.36 7.65 -52.49 -0.40 0.96 16 41 H 0.16 1.10 7.73 -52.49 -0.41 0.70 16 42 H 0.40 0.59 6.89 -40.82 -0.28 0.31 16 43 H 0.41 1.21 8.93 -40.82 -0.36 0.85 16 44 H 0.17 0.59 6.41 -52.49 -0.34 0.25 16 45 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 46 H 0.13 1.60 4.19 -77.39 -0.32 1.27 16 47 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 48 H 0.09 1.52 5.85 -51.93 -0.30 1.22 16 LS Contribution 382.16 15.07 5.76 5.76 Total: -1.00 -34.29 382.16 -8.68 -42.96 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -6.78 Total: -0.51 kcal Atomic # 6 Polarization: 9.26 SS G_CDS: -2.59 Total: 6.66 kcal Atomic # 7 Polarization: -56.57 SS G_CDS: -0.22 Total: -56.79 kcal Atomic # 8 Polarization: -14.80 SS G_CDS: 0.18 Total: -14.62 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.29 -8.68 -42.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732089310.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.730 kcal (2) G-P(sol) polarization free energy of solvation -34.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.964 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds