Wall clock time and date at job start Wed Apr 1 2020 03:38:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46502 * 119.99960 * 2 1 4 4 C 1.34772 * 120.00173 * 180.02562 * 2 1 3 5 5 O 1.21520 * 120.00122 * 14.94494 * 4 2 1 6 6 C 1.48183 * 120.00154 * 194.67177 * 4 2 1 7 7 C 1.39076 * 119.69253 * 188.96783 * 6 4 2 8 8 C 1.39364 * 118.96645 * 179.77151 * 7 6 4 9 9 N 1.39559 * 120.83206 * 180.26809 * 8 7 6 10 10 C 1.34775 * 120.00346 * 214.14840 * 9 8 7 11 11 O 1.21580 * 119.99777 * 355.45247 * 10 9 8 12 12 N 1.34782 * 119.99958 * 175.45069 * 10 9 8 13 13 C 1.46925 * 120.62786 * 4.81695 * 12 10 9 14 14 C 1.52765 * 109.00700 * 233.57948 * 13 12 10 15 15 C 1.53043 * 109.38126 * 305.59221 * 14 13 12 16 16 C 1.50704 * 109.44481 * 181.25062 * 15 14 13 17 17 H 1.07998 * 120.00200 * 245.87063 * 16 15 14 18 18 C 1.37879 * 119.99625 * 65.86521 * 16 15 14 19 19 N 1.31507 * 120.00023 * 7.29561 * 18 16 15 20 20 Si 1.86802 * 119.99451 * 187.29011 * 18 16 15 21 21 H 1.48492 * 109.46948 * 94.99582 * 20 18 16 22 22 H 1.48501 * 109.46874 * 214.99018 * 20 18 16 23 23 H 1.48494 * 109.47424 * 334.98936 * 20 18 16 24 24 C 1.53039 * 109.53558 * 61.24246 * 15 14 13 25 25 C 1.46926 * 120.62801 * 185.09647 * 12 10 9 26 26 C 1.39347 * 118.34686 * 0.49452 * 8 7 6 27 27 C 1.38285 * 119.27018 * 359.74680 * 26 8 7 28 28 N 1.31623 * 120.98520 * 0.02562 * 27 26 8 29 29 H 1.09001 * 109.46680 * 269.99793 * 1 2 3 30 30 H 1.08996 * 109.47339 * 29.99696 * 1 2 3 31 31 H 1.09001 * 109.47129 * 150.00207 * 1 2 3 32 32 H 1.08994 * 109.47076 * 186.20723 * 3 2 1 33 33 H 1.09005 * 109.46853 * 306.20561 * 3 2 1 34 34 H 1.08999 * 109.47151 * 66.20681 * 3 2 1 35 35 H 1.08003 * 120.51522 * 0.02562 * 7 6 4 36 36 H 0.97002 * 119.99340 * 34.13902 * 9 8 7 37 37 H 1.08998 * 109.59022 * 353.41926 * 13 12 10 38 38 H 1.09004 * 109.58306 * 113.84782 * 13 12 10 39 39 H 1.09001 * 109.56150 * 185.55685 * 14 13 12 40 40 H 1.09000 * 109.38280 * 65.51664 * 14 13 12 41 41 H 1.08990 * 109.46278 * 301.21934 * 15 14 13 42 42 H 0.97006 * 119.99951 * 179.97438 * 19 18 16 43 43 H 1.09001 * 109.49471 * 178.68151 * 24 15 14 44 44 H 1.08997 * 109.53042 * 58.60290 * 24 15 14 45 45 H 1.09001 * 109.58525 * 246.15490 * 25 12 10 46 46 H 1.09002 * 109.58606 * 6.43518 * 25 12 10 47 47 H 1.08001 * 120.36603 * 179.77718 * 26 8 7 48 48 H 1.08000 * 119.50845 * 179.97438 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1389 -1.1671 -0.0005 5 8 1.5622 -2.2016 -0.2724 6 6 3.5845 -1.1882 0.3245 7 6 4.3147 -2.3576 0.1418 8 6 5.6744 -2.3591 0.4477 9 7 6.4454 -3.5094 0.2739 10 6 7.4585 -3.7761 1.1218 11 8 7.7537 -2.9749 1.9873 12 7 8.1442 -4.9311 1.0103 13 6 7.8697 -5.8610 -0.0936 14 6 7.5798 -7.2457 0.4827 15 6 8.7366 -7.6705 1.3901 16 6 8.4664 -9.0493 1.9352 17 1 8.3001 -9.1888 2.9931 18 6 8.4314 -10.1328 1.0831 19 7 8.7739 -9.9885 -0.1784 20 14 7.8976 -11.8055 1.7208 21 1 6.4496 -11.9979 1.4537 22 1 8.6734 -12.8682 1.0323 23 1 8.1456 -11.8801 3.1830 24 6 8.8676 -6.6805 2.5498 25 6 9.1761 -5.2869 1.9938 26 6 6.2439 -1.1849 0.9361 27 6 5.4502 -0.0638 1.0953 28 7 4.1694 -0.0918 0.7932 29 1 -0.3633 0.0000 1.0277 30 1 -0.3634 0.8900 -0.5138 31 1 -0.3633 -0.8900 -0.5138 32 1 3.2639 1.0726 -0.1111 33 1 1.8534 1.8869 -0.8293 34 1 2.0201 1.7907 0.9403 35 1 3.8364 -3.2496 -0.2353 36 1 6.2520 -4.1169 -0.4571 37 1 7.0045 -5.5130 -0.6580 38 1 8.7385 -5.9159 -0.7496 39 1 7.4721 -7.9640 -0.3300 40 1 6.6571 -7.2105 1.0619 41 1 9.6630 -7.6821 0.8161 42 1 8.7496 -10.7509 -0.7778 43 1 9.6766 -6.9967 3.2084 44 1 7.9332 -6.6500 3.1101 45 1 10.1536 -5.2941 1.5114 46 1 9.1743 -4.5588 2.8049 47 1 7.2938 -1.1507 1.1871 48 1 5.8876 0.8482 1.4739 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000543826123.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:38:58 Heat of formation + Delta-G solvation = 2.146640 kcal Electronic energy + Delta-G solvation = -30118.321600 eV Core-core repulsion = 25981.453473 eV Total energy + Delta-G solvation = -4136.868127 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.179 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.29699 -40.33049 -39.04667 -37.27580 -35.91219 -35.27831 -33.69057 -31.83517 -31.67108 -30.59023 -30.14915 -28.25525 -26.74656 -26.32838 -24.24122 -23.70604 -22.99979 -22.44572 -21.00907 -19.90309 -19.29172 -18.35964 -17.55971 -17.14721 -16.39867 -16.29429 -16.13405 -16.09713 -15.60664 -15.19046 -15.05553 -14.56292 -14.47325 -14.15799 -13.93619 -13.78566 -13.28454 -13.21074 -12.99813 -12.80200 -12.74522 -12.70117 -12.53312 -12.35354 -12.14300 -11.77767 -11.50503 -11.06795 -10.98286 -10.72137 -10.53743 -10.51729 -10.35764 -10.12505 -9.72273 -9.44335 -9.36362 -9.22171 -9.11627 -8.88846 -8.83679 -8.44281 -8.15935 -6.12628 -4.15164 0.48691 0.93384 2.43106 2.48978 2.78488 3.15217 3.24545 3.32571 3.35692 3.63088 3.80405 3.87914 4.36415 4.41786 4.71404 4.86283 4.91123 5.09040 5.11797 5.17794 5.18667 5.31109 5.37029 5.41185 5.49189 5.51973 5.58462 5.74677 5.86728 5.88659 5.89984 6.01155 6.05678 6.08386 6.28136 6.34376 6.49151 6.56746 6.63739 6.82309 6.94624 6.96738 7.02028 7.15474 7.47533 7.54726 7.78565 7.86397 7.87949 7.88894 8.31244 8.49014 8.88794 9.49754 10.95869 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.016015 B = 0.002258 C = 0.002049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.887695 B =12396.296630 C =13663.712661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.607 5.607 3 C 0.061 3.939 4 C 0.575 3.425 5 O -0.530 6.530 6 C 0.091 3.909 7 C -0.142 4.142 8 C 0.216 3.784 9 N -0.685 5.685 10 C 0.706 3.294 11 O -0.583 6.583 12 N -0.608 5.608 13 C 0.107 3.893 14 C -0.120 4.120 15 C 0.048 3.952 16 C -0.515 4.515 17 H 0.055 0.945 18 C 0.064 3.936 19 N -0.890 5.890 20 Si 0.888 3.112 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.274 1.274 24 C -0.125 4.125 25 C 0.128 3.872 26 C -0.152 4.152 27 C 0.109 3.891 28 N -0.470 5.470 29 H 0.055 0.945 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.125 0.875 33 H 0.049 0.951 34 H 0.056 0.944 35 H 0.150 0.850 36 H 0.413 0.587 37 H 0.057 0.943 38 H 0.070 0.930 39 H 0.089 0.911 40 H 0.043 0.957 41 H 0.036 0.964 42 H 0.261 0.739 43 H 0.065 0.935 44 H 0.052 0.948 45 H 0.063 0.937 46 H 0.081 0.919 47 H 0.160 0.840 48 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.520 21.831 -2.769 23.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.340 5.340 3 C -0.081 4.081 4 C 0.362 3.638 5 O -0.406 6.406 6 C -0.047 4.047 7 C -0.166 4.166 8 C 0.110 3.890 9 N -0.335 5.335 10 C 0.408 3.592 11 O -0.462 6.462 12 N -0.343 5.343 13 C -0.016 4.016 14 C -0.159 4.159 15 C 0.029 3.971 16 C -0.553 4.553 17 H 0.074 0.926 18 C -0.138 4.138 19 N -0.528 5.528 20 Si 0.716 3.284 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.199 1.199 24 C -0.163 4.163 25 C 0.006 3.994 26 C -0.175 4.175 27 C -0.049 4.049 28 N -0.184 5.184 29 H 0.074 0.926 30 H 0.089 0.911 31 H 0.097 0.903 32 H 0.142 0.858 33 H 0.067 0.933 34 H 0.075 0.925 35 H 0.168 0.832 36 H 0.253 0.747 37 H 0.075 0.925 38 H 0.089 0.911 39 H 0.108 0.892 40 H 0.061 0.939 41 H 0.054 0.946 42 H 0.071 0.929 43 H 0.083 0.917 44 H 0.070 0.930 45 H 0.082 0.918 46 H 0.100 0.900 47 H 0.177 0.823 48 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -9.048 22.365 -2.340 24.239 hybrid contribution -0.005 -2.086 -0.199 2.096 sum -9.053 20.279 -2.539 22.352 Atomic orbital electron populations 1.21695 0.78968 1.03385 1.01929 1.47444 1.06912 1.06664 1.72959 1.22599 1.01083 0.83744 1.00701 1.17955 0.85367 0.83502 0.77006 1.90789 1.69156 1.32761 1.47846 1.20713 0.94123 0.90083 0.99771 1.21811 0.91698 1.00057 1.03069 1.17699 0.89327 0.86373 0.95587 1.42848 1.33064 1.24425 1.33141 1.15784 0.79307 0.82795 0.81275 1.90862 1.69762 1.47866 1.37680 1.47492 1.39004 1.18130 1.29642 1.21899 0.99800 0.91864 0.88018 1.21910 1.00247 0.92143 1.01577 1.18636 0.94557 0.92575 0.91286 1.21164 1.48602 0.91529 0.94003 0.92636 1.24956 0.94973 0.98838 0.95039 1.69922 1.47431 1.31088 1.04396 0.86640 0.78723 0.83948 0.79091 1.20715 1.21261 1.19887 1.22044 1.01013 0.93214 1.00051 1.21704 0.88785 0.98027 0.90887 1.22599 1.03581 0.91186 1.00090 1.22774 0.88698 0.98224 0.95244 1.67697 1.12253 1.26474 1.12026 0.92610 0.91105 0.90280 0.85776 0.93277 0.92519 0.83243 0.74711 0.92516 0.91139 0.89243 0.93859 0.94615 0.92948 0.91669 0.92952 0.91843 0.90022 0.82280 0.81612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.66 10.59 59.85 0.63 1.30 16 2 N -0.61 -6.23 3.27 -190.52 -0.62 -6.85 16 3 C 0.06 0.48 9.91 59.85 0.59 1.07 16 4 C 0.57 7.47 7.56 -12.18 -0.09 7.38 16 5 O -0.53 -8.33 15.93 5.35 0.09 -8.24 16 6 C 0.09 1.12 6.48 -83.05 -0.54 0.58 16 7 C -0.14 -1.77 9.58 -38.85 -0.37 -2.14 16 8 C 0.22 2.74 6.36 -83.51 -0.53 2.21 16 9 N -0.69 -9.02 5.26 -14.08 -0.07 -9.10 16 10 C 0.71 11.34 8.16 -86.91 -0.71 10.63 16 11 O -0.58 -10.52 13.20 5.29 0.07 -10.45 16 12 N -0.61 -9.93 2.98 -178.76 -0.53 -10.46 16 13 C 0.11 1.70 6.40 -3.93 -0.03 1.67 16 14 C -0.12 -2.44 5.19 -26.83 -0.14 -2.58 16 15 C 0.05 1.08 1.93 -91.73 -0.18 0.90 16 16 C -0.51 -13.30 8.48 -34.44 -0.29 -13.59 16 17 H 0.06 1.45 7.76 -52.49 -0.41 1.04 16 18 C 0.06 1.67 5.23 -17.82 -0.09 1.58 16 19 N -0.89 -23.95 12.08 55.43 0.67 -23.28 16 20 Si 0.89 20.54 29.54 -169.99 -5.02 15.52 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 24 C -0.12 -2.41 5.30 -26.61 -0.14 -2.55 16 25 C 0.13 2.15 6.42 -3.71 -0.02 2.13 16 26 C -0.15 -1.79 8.78 -39.15 -0.34 -2.13 16 27 C 0.11 1.06 11.17 -17.62 -0.20 0.86 16 28 N -0.47 -5.05 6.35 -9.88 -0.06 -5.11 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.39 8.07 -51.93 -0.42 -0.03 16 31 H 0.08 0.72 7.29 -51.93 -0.38 0.34 16 32 H 0.12 1.07 4.45 -63.12 -0.28 0.79 16 33 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.15 1.82 7.66 -52.48 -0.40 1.42 16 36 H 0.41 4.64 6.28 -40.82 -0.26 4.38 16 37 H 0.06 0.73 5.56 -51.93 -0.29 0.44 16 38 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.09 2.03 6.82 -51.93 -0.35 1.68 16 40 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.04 0.88 8.09 -51.93 -0.42 0.46 16 42 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 43 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 44 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 45 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 46 H 0.08 1.36 7.03 -51.93 -0.37 0.99 16 47 H 0.16 2.01 6.23 -52.49 -0.33 1.69 16 48 H 0.17 1.06 8.06 -52.49 -0.42 0.63 16 LS Contribution 384.24 15.07 5.79 5.79 Total: -1.00 -30.85 384.24 -8.99 -39.84 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: -6.84 Total: 5.03 kcal Atomic # 6 Polarization: 9.75 SS G_CDS: -2.45 Total: 7.31 kcal Atomic # 7 Polarization: -54.17 SS G_CDS: -0.62 Total: -54.80 kcal Atomic # 8 Polarization: -18.85 SS G_CDS: 0.16 Total: -18.69 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -30.85 -8.99 -39.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000543826123.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.984 kcal (2) G-P(sol) polarization free energy of solvation -30.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.837 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds