Wall clock time and date at job start Wed Apr 1 2020 03:33:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36938 * 120.00353 * 2 1 4 4 H 1.07995 * 120.00050 * 210.28924 * 3 2 1 5 5 C 1.38818 * 119.99926 * 30.28892 * 3 2 1 6 6 N 1.31621 * 119.99717 * 7.33855 * 5 3 2 7 7 Si 1.86792 * 119.99816 * 187.33747 * 5 3 2 8 8 H 1.48497 * 109.47276 * 60.00094 * 7 5 3 9 9 H 1.48499 * 109.46953 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47239 * 299.99618 * 7 5 3 11 11 C 1.46503 * 119.99832 * 179.97438 * 2 1 3 12 12 C 1.52998 * 109.47075 * 270.00265 * 11 2 1 13 13 H 1.08998 * 109.50102 * 305.06508 * 12 11 2 14 14 C 1.53041 * 109.49824 * 184.99899 * 12 11 2 15 15 C 1.53039 * 109.53920 * 178.65035 * 14 12 11 16 16 C 1.53198 * 109.31422 * 61.36525 * 15 14 12 17 17 N 1.46924 * 108.77355 * 305.36536 * 16 15 14 18 18 C 1.34771 * 120.62874 * 233.58351 * 17 16 15 19 19 O 1.21501 * 120.00033 * 180.76674 * 18 17 16 20 20 C 1.48333 * 120.00408 * 0.77049 * 18 17 16 21 21 C 1.39305 * 119.57659 * 157.81176 * 20 18 17 22 22 C 1.38448 * 119.19194 * 180.25355 * 21 20 18 23 23 C 1.39875 * 118.35531 * 359.48032 * 22 21 20 24 24 C 1.48005 * 120.45909 * 180.30230 * 23 22 21 25 25 N 1.34784 * 119.99826 * 179.97438 * 24 23 22 26 26 O 1.21529 * 120.00478 * 359.97438 * 24 23 22 27 27 C 1.39725 * 119.07394 * 0.26809 * 23 22 21 28 28 N 1.31411 * 120.71957 * 359.97438 * 27 23 22 29 29 C 1.46922 * 118.74004 * 53.86020 * 17 16 15 30 30 H 1.09003 * 109.47167 * 266.55562 * 1 2 3 31 31 H 1.09001 * 109.46575 * 26.54840 * 1 2 3 32 32 H 1.08993 * 109.47286 * 146.54801 * 1 2 3 33 33 H 0.97002 * 119.99441 * 180.02562 * 6 5 3 34 34 H 1.08997 * 109.47254 * 150.00030 * 11 2 1 35 35 H 1.09003 * 109.46991 * 29.99441 * 11 2 1 36 36 H 1.09002 * 109.45929 * 58.62845 * 14 12 11 37 37 H 1.09001 * 109.45748 * 298.66821 * 14 12 11 38 38 H 1.09005 * 109.50094 * 301.41126 * 15 14 12 39 39 H 1.09003 * 109.49541 * 181.31426 * 15 14 12 40 40 H 1.08999 * 109.58651 * 185.57575 * 16 15 14 41 41 H 1.08997 * 109.70275 * 65.22490 * 16 15 14 42 42 H 1.07998 * 120.40316 * 0.02904 * 21 20 18 43 43 H 1.07995 * 120.82649 * 179.74937 * 22 21 20 44 44 H 0.97002 * 119.99640 * 359.97438 * 25 24 23 45 45 H 0.96999 * 120.00205 * 179.97438 * 25 24 23 46 46 H 1.08001 * 119.63953 * 179.97438 * 27 23 22 47 47 H 1.08997 * 109.59138 * 65.92463 * 29 17 16 48 48 H 1.09003 * 109.59147 * 186.35493 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1192 1.2497 -0.4717 5 6 1.5979 2.3060 0.6063 6 7 0.4875 2.1965 1.3046 7 14 2.4310 3.9687 0.4313 8 1 2.5032 4.3374 -1.0054 9 1 1.6482 4.9944 1.1663 10 1 3.8036 3.8962 0.9934 11 6 2.1975 -1.2688 0.0006 12 6 2.4524 -1.7098 1.4432 13 1 2.9631 -0.9122 1.9827 14 6 3.3239 -2.9679 1.4464 15 6 3.6074 -3.3906 2.8897 16 6 2.2851 -3.7166 3.5912 17 7 1.3861 -2.5612 3.4663 18 6 0.8186 -2.0116 4.5582 19 8 0.0660 -1.0651 4.4404 20 6 1.1129 -2.5620 5.9038 21 6 0.9297 -1.7617 7.0292 22 6 1.2119 -2.2819 8.2808 23 6 1.6624 -3.6034 8.3649 24 6 1.9714 -4.2085 9.6798 25 7 2.4044 -5.4830 9.7501 26 8 1.8347 -3.5563 10.6961 27 6 1.8159 -4.3445 7.1904 28 7 1.5418 -3.8126 6.0204 29 6 1.1126 -2.0203 2.1279 30 1 -0.3634 -0.0617 1.0258 31 1 -0.3632 0.9193 -0.4593 32 1 -0.3633 -0.8574 -0.5664 33 1 0.1017 2.9793 1.7280 34 1 3.1499 -1.1387 -0.5133 35 1 1.6083 -2.0287 -0.5129 36 1 4.2650 -2.7590 0.9376 37 1 2.8019 -3.7724 0.9283 38 1 4.1073 -2.5771 3.4155 39 1 4.2473 -4.2730 2.8913 40 1 2.4716 -3.9222 4.6452 41 1 1.8267 -4.5885 3.1245 42 1 0.5754 -0.7468 6.9263 43 1 1.0832 -1.6835 9.1706 44 1 2.5131 -6.0037 8.9389 45 1 2.6073 -5.8795 10.6118 46 1 2.1635 -5.3656 7.2446 47 1 0.5616 -2.7560 1.5420 48 1 0.5253 -1.1063 2.2161 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566746292.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:33:29 Heat of formation + Delta-G solvation = 4.004751 kcal Electronic energy + Delta-G solvation = -30893.315857 eV Core-core repulsion = 26756.528304 eV Total energy + Delta-G solvation = -4136.787553 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.179 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.26721 -39.90032 -38.83236 -37.36818 -35.42202 -34.39903 -33.42977 -32.49623 -31.64716 -31.50403 -29.92732 -26.78007 -25.92178 -25.37567 -24.41707 -24.01858 -22.32769 -21.66851 -20.89220 -20.07394 -19.21861 -18.59440 -17.78284 -17.10044 -16.59350 -16.53578 -15.69986 -15.46361 -15.32490 -14.99609 -14.86754 -14.72767 -14.45400 -14.06356 -13.74202 -13.68206 -13.51059 -13.29272 -13.09657 -12.82915 -12.60899 -12.36062 -12.13288 -11.57428 -11.13830 -10.92710 -10.81331 -10.77855 -10.63351 -10.60609 -10.44604 -10.33365 -10.25152 -10.08055 -10.03107 -9.99413 -9.82210 -9.60366 -9.56513 -9.12296 -8.42915 -8.24223 -6.53983 -5.64427 -3.15379 -0.04171 0.77818 2.18569 2.90539 2.92006 3.09831 3.43547 3.48873 3.49730 3.52393 3.79682 4.26238 4.29147 4.48475 4.57100 4.57262 4.78361 5.10656 5.19629 5.23796 5.35309 5.50022 5.53431 5.57010 5.60213 5.66782 5.84897 5.91999 5.93968 6.08893 6.20305 6.23758 6.26700 6.28403 6.38626 6.41145 6.55000 6.70143 6.74555 6.82888 6.91760 6.99098 7.18387 7.22105 7.43189 7.69050 7.69884 7.83730 7.89846 8.36210 8.55044 9.34057 9.95421 10.48893 11.41310 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.014598 B = 0.002789 C = 0.002529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1917.547092 B =10037.236022 C =11069.485994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.159 3.841 2 N -0.599 5.599 3 C -0.262 4.262 4 H 0.062 0.938 5 C 0.010 3.990 6 N -0.896 5.896 7 Si 0.900 3.100 8 H -0.285 1.285 9 H -0.291 1.291 10 H -0.284 1.284 11 C 0.159 3.841 12 C -0.118 4.118 13 H 0.075 0.925 14 C -0.116 4.116 15 C -0.134 4.134 16 C 0.077 3.923 17 N -0.584 5.584 18 C 0.556 3.444 19 O -0.511 6.511 20 C 0.120 3.880 21 C -0.119 4.119 22 C -0.016 4.016 23 C -0.182 4.182 24 C 0.571 3.429 25 N -0.848 5.848 26 O -0.534 6.534 27 C 0.125 3.875 28 N -0.452 5.452 29 C 0.117 3.883 30 H 0.027 0.973 31 H 0.049 0.951 32 H -0.008 1.008 33 H 0.253 0.747 34 H 0.046 0.954 35 H 0.035 0.965 36 H 0.059 0.941 37 H 0.057 0.943 38 H 0.060 0.940 39 H 0.066 0.934 40 H 0.132 0.868 41 H 0.062 0.938 42 H 0.159 0.841 43 H 0.156 0.844 44 H 0.402 0.598 45 H 0.408 0.592 46 H 0.165 0.835 47 H 0.055 0.945 48 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.689 -19.874 12.689 24.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.321 5.321 3 C -0.392 4.392 4 H 0.080 0.920 5 C -0.190 4.190 6 N -0.539 5.539 7 Si 0.730 3.270 8 H -0.211 1.211 9 H -0.217 1.217 10 H -0.210 1.210 11 C 0.031 3.969 12 C -0.140 4.140 13 H 0.094 0.906 14 C -0.154 4.154 15 C -0.173 4.173 16 C -0.046 4.046 17 N -0.316 5.316 18 C 0.340 3.660 19 O -0.385 6.385 20 C -0.017 4.017 21 C -0.139 4.139 22 C -0.042 4.042 23 C -0.187 4.187 24 C 0.356 3.644 25 N -0.413 5.413 26 O -0.411 6.411 27 C -0.035 4.035 28 N -0.163 5.163 29 C -0.003 4.003 30 H 0.045 0.955 31 H 0.067 0.933 32 H 0.010 0.990 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.054 0.946 36 H 0.078 0.922 37 H 0.075 0.925 38 H 0.079 0.921 39 H 0.084 0.916 40 H 0.148 0.852 41 H 0.081 0.919 42 H 0.177 0.823 43 H 0.173 0.827 44 H 0.232 0.768 45 H 0.239 0.761 46 H 0.182 0.818 47 H 0.074 0.926 48 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 4.075 -19.103 12.449 23.163 hybrid contribution 0.622 0.857 0.711 1.275 sum 4.696 -18.246 13.159 22.981 Atomic orbital electron populations 1.20856 0.82985 0.96682 0.98022 1.43850 1.01594 1.00611 1.86042 1.19031 1.02869 0.87169 1.30083 0.92023 1.25206 0.97902 0.98796 0.97091 1.70008 1.20553 1.28657 1.34719 0.86423 0.78869 0.84189 0.77488 1.21101 1.21670 1.21033 1.20844 0.95843 0.88288 0.91927 1.22314 0.94668 0.96190 1.00864 0.90646 1.21603 0.99998 0.98227 0.95570 1.21947 0.97126 1.01048 0.97159 1.22750 0.89290 0.87262 1.05256 1.48043 1.45283 1.31437 1.06796 1.17892 0.81863 0.83185 0.83025 1.90909 1.35835 1.26578 1.85205 1.21709 0.94599 0.90070 0.95325 1.22219 0.98040 1.02534 0.91129 1.21795 0.90602 0.93346 0.98483 1.21029 1.06415 0.96776 0.94520 1.18062 0.76267 0.81801 0.88318 1.43722 1.70339 1.13943 1.13278 1.90844 1.52341 1.61612 1.36254 1.23051 0.94300 0.99377 0.86761 1.67701 1.10918 1.12039 1.25676 1.22074 0.98206 1.00378 0.79669 0.95533 0.93255 0.98956 0.93628 0.93613 0.94640 0.92202 0.92469 0.92126 0.91571 0.85172 0.91932 0.82327 0.82668 0.76829 0.76055 0.81844 0.92637 0.86628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.98 8.16 59.85 0.49 4.47 16 2 N -0.60 -15.09 2.75 -181.12 -0.50 -15.58 16 3 C -0.26 -7.26 9.59 -15.06 -0.14 -7.40 16 4 H 0.06 1.68 7.84 -52.49 -0.41 1.27 16 5 C 0.01 0.28 5.14 -17.43 -0.09 0.19 16 6 N -0.90 -26.75 10.93 55.49 0.61 -26.14 16 7 Si 0.90 22.31 29.56 -169.99 -5.02 17.28 16 8 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 9 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 10 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 11 C 0.16 3.24 5.18 -4.04 -0.02 3.22 16 12 C -0.12 -2.20 2.56 -90.27 -0.23 -2.44 16 13 H 0.08 1.69 8.14 -51.93 -0.42 1.26 16 14 C -0.12 -1.64 5.16 -26.69 -0.14 -1.78 16 15 C -0.13 -1.68 6.08 -26.61 -0.16 -1.84 16 16 C 0.08 0.99 6.00 -3.71 -0.02 0.97 16 17 N -0.58 -9.82 2.97 -173.43 -0.51 -10.33 16 18 C 0.56 9.96 7.62 -12.11 -0.09 9.87 16 19 O -0.51 -11.34 15.94 5.36 0.09 -11.26 16 20 C 0.12 1.65 6.46 -82.93 -0.54 1.12 16 21 C -0.12 -1.45 9.61 -39.11 -0.38 -1.82 16 22 C -0.02 -0.16 9.71 -38.89 -0.38 -0.54 16 23 C -0.18 -1.60 5.90 -104.73 -0.62 -2.22 16 24 C 0.57 4.89 8.06 -12.25 -0.10 4.79 16 25 N -0.85 -3.42 8.83 30.57 0.27 -3.15 16 26 O -0.53 -6.72 17.25 5.34 0.09 -6.62 16 27 C 0.13 0.96 10.71 -17.18 -0.18 0.78 16 28 N -0.45 -4.92 6.35 -9.48 -0.06 -4.98 16 29 C 0.12 2.24 5.13 -3.48 -0.02 2.23 16 30 H 0.03 0.72 5.88 -51.93 -0.31 0.41 16 31 H 0.05 1.33 7.12 -51.93 -0.37 0.96 16 32 H -0.01 -0.18 7.94 -51.93 -0.41 -0.59 16 33 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 34 H 0.05 0.91 8.04 -51.93 -0.42 0.49 16 35 H 0.04 0.66 7.93 -51.93 -0.41 0.25 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 39 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.13 1.52 3.97 -79.31 -0.31 1.20 16 41 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 42 H 0.16 1.98 7.79 -52.49 -0.41 1.57 16 43 H 0.16 1.41 7.73 -52.49 -0.41 1.01 16 44 H 0.40 0.45 6.89 -40.82 -0.28 0.16 16 45 H 0.41 1.17 8.93 -40.82 -0.36 0.81 16 46 H 0.16 0.52 6.41 -52.49 -0.34 0.18 16 47 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 48 H 0.12 2.78 4.65 -51.93 -0.24 2.53 16 LS Contribution 383.36 15.07 5.78 5.78 Total: -1.00 -35.89 383.36 -8.66 -44.55 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -6.78 Total: 0.89 kcal Atomic # 6 Polarization: 12.20 SS G_CDS: -2.62 Total: 9.58 kcal Atomic # 7 Polarization: -60.00 SS G_CDS: -0.20 Total: -60.20 kcal Atomic # 8 Polarization: -18.06 SS G_CDS: 0.18 Total: -17.88 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -35.89 -8.66 -44.55 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566746292.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.551 kcal (2) G-P(sol) polarization free energy of solvation -35.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.546 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds