Wall clock time and date at job start Wed Apr 1 2020 03:38:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46902 * 110.99573 * 2 1 4 4 C 1.53000 * 109.47107 * 66.05001 * 3 2 1 5 5 N 1.46502 * 109.47233 * 179.97438 * 4 3 2 6 6 C 1.34770 * 120.00552 * 179.97438 * 5 4 3 7 7 O 1.21284 * 119.99460 * 359.97438 * 6 5 4 8 8 C 1.50702 * 120.00447 * 179.97438 * 6 5 4 9 9 H 1.08999 * 115.54297 * 34.42097 * 8 6 5 10 10 C 1.52994 * 117.50101 * 248.74797 * 8 6 5 11 11 C 1.52993 * 117.50101 * 180.08484 * 8 6 5 12 12 H 1.09001 * 117.50072 * 0.02562 * 11 8 6 13 13 C 1.50704 * 117.50320 * 215.00681 * 11 8 6 14 14 C 1.38652 * 120.78157 * 299.72179 * 13 11 8 15 15 C 1.38211 * 119.15566 * 179.79866 * 14 13 11 16 16 N 1.31871 * 120.76495 * 0.48194 * 15 14 13 17 17 C 1.31871 * 121.72254 * 359.74840 * 16 15 14 18 18 C 1.38206 * 120.76720 * 0.02562 * 17 16 15 19 19 C 1.46898 * 110.99888 * 236.04634 * 2 1 3 20 20 C 1.50697 * 109.47095 * 293.94952 * 19 2 1 21 21 O 1.21295 * 120.00153 * 0.02562 * 20 19 2 22 22 N 1.34777 * 119.99926 * 180.02562 * 20 19 2 23 23 C 1.37092 * 120.00019 * 180.02562 * 22 20 19 24 24 H 1.07998 * 119.99935 * 359.97438 * 23 22 20 25 25 C 1.38949 * 120.00187 * 180.02562 * 23 22 20 26 26 N 1.31417 * 120.00004 * 359.97438 * 25 23 22 27 27 Si 1.86803 * 120.00359 * 180.02562 * 25 23 22 28 28 H 1.48497 * 109.47063 * 59.99536 * 27 25 23 29 29 H 1.48495 * 109.47265 * 180.02562 * 27 25 23 30 30 H 1.48503 * 109.46931 * 299.99907 * 27 25 23 31 31 H 1.09001 * 109.46544 * 183.95424 * 1 2 3 32 32 H 1.09001 * 109.47272 * 303.95030 * 1 2 3 33 33 H 1.09000 * 109.47033 * 63.95479 * 1 2 3 34 34 H 1.09001 * 109.46557 * 186.04354 * 3 2 1 35 35 H 1.08994 * 109.47575 * 306.04356 * 3 2 1 36 36 H 1.09001 * 109.46884 * 299.99153 * 4 3 2 37 37 H 1.09001 * 109.47688 * 59.99882 * 4 3 2 38 38 H 0.97004 * 119.99289 * 359.97438 * 5 4 3 39 39 H 1.09002 * 117.50071 * 359.97438 * 10 8 6 40 40 H 1.08998 * 117.49682 * 145.01739 * 10 8 6 41 41 H 1.07998 * 120.42691 * 0.02562 * 14 13 11 42 42 H 1.07993 * 119.61674 * 180.20947 * 15 14 13 43 43 H 1.08005 * 119.61268 * 180.02562 * 17 16 15 44 44 H 1.07999 * 120.41347 * 180.02562 * 18 17 16 45 45 H 1.08992 * 109.47062 * 53.95734 * 19 2 1 46 46 H 1.09003 * 109.46753 * 173.95421 * 19 2 1 47 47 H 0.96998 * 120.00288 * 359.97438 * 22 20 19 48 48 H 0.97000 * 120.00335 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6314 2.0574 1.3183 5 7 2.1569 3.4250 1.3186 6 6 1.9557 4.2241 2.3850 7 8 1.3392 3.8111 3.3444 8 6 2.4967 5.6306 2.3855 9 1 2.4994 6.1335 1.4185 10 6 3.6419 5.9467 3.3495 11 6 2.2367 6.4871 3.6263 12 1 1.6748 6.0331 4.4426 13 6 2.0042 7.9614 3.4181 14 6 2.9760 8.7570 2.8306 15 6 2.7256 10.1045 2.6520 16 7 1.5831 10.6357 3.0414 17 6 0.6385 9.9104 3.6077 18 6 0.8160 8.5555 3.8147 19 6 1.9955 -0.7660 -1.1376 20 6 1.6370 -2.2204 -0.9728 21 8 1.0048 -2.5831 -0.0033 22 7 2.0190 -3.1181 -1.9027 23 6 1.6925 -4.4411 -1.7531 24 1 1.1295 -4.7641 -0.8898 25 6 2.0867 -5.3667 -2.7114 26 7 2.7721 -4.9738 -3.7616 27 14 1.6412 -7.1694 -2.5080 28 1 0.1639 -7.3116 -2.4581 29 1 2.1751 -7.9440 -3.6569 30 1 2.2310 -7.6857 -1.2467 31 1 -0.3632 -1.0253 0.0709 32 1 -0.3634 0.5739 0.8525 33 1 -0.3633 0.4512 -0.9233 34 1 3.0797 1.3444 -0.1082 35 1 1.5611 1.9274 -0.8309 36 1 0.5472 2.0845 1.4265 37 1 2.0658 1.5016 2.1492 38 1 2.6496 3.7553 0.5511 39 1 4.0038 5.1375 3.9837 40 1 4.3980 6.6579 3.0168 41 1 3.9152 8.3287 2.5133 42 1 3.4759 10.7304 2.1921 43 1 -0.2845 10.3807 3.9132 44 1 0.0384 7.9668 4.2786 45 1 1.5612 -0.3872 -2.0627 46 1 3.0798 -0.6611 -1.1756 47 1 2.5243 -2.8280 -2.6782 48 1 3.0477 -5.6200 -4.4305 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663185080.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:38:49 Heat of formation + Delta-G solvation = -0.337242 kcal Electronic energy + Delta-G solvation = -28087.118174 eV Core-core repulsion = 23950.142337 eV Total energy + Delta-G solvation = -4136.975836 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.99346 -40.02829 -38.71350 -37.44380 -36.64849 -34.71475 -33.82536 -32.48425 -31.64938 -31.27136 -29.73617 -27.75874 -25.93360 -25.11935 -24.62367 -23.81661 -23.21251 -21.39259 -21.29690 -20.28768 -19.19511 -18.12478 -17.87338 -17.18249 -16.63345 -16.33827 -16.06941 -15.95089 -15.86659 -15.14783 -14.95893 -14.72313 -14.53930 -14.33330 -14.12952 -14.01821 -13.92711 -13.55232 -13.37818 -13.02748 -12.90731 -12.51484 -12.14692 -12.11485 -11.94332 -11.61960 -11.52191 -11.44180 -11.30078 -11.13199 -11.05980 -10.94042 -10.44999 -10.24404 -10.21898 -9.94438 -9.75186 -9.62786 -9.48638 -9.28866 -8.51537 -8.01035 -7.91169 -6.43208 -3.84040 0.65628 0.68775 2.17090 2.71505 3.18162 3.19237 3.25088 3.29566 3.52317 3.84038 3.88317 4.00686 4.04113 4.12858 4.23548 4.25803 4.38311 4.57182 4.58669 4.66867 4.72309 4.80358 4.93651 5.06496 5.08691 5.18068 5.22883 5.32021 5.34259 5.37605 5.41231 5.58847 5.59606 5.65861 5.79802 5.83325 5.88412 5.89018 5.96745 6.15757 6.21683 6.25199 6.53737 7.13706 7.21413 7.28941 7.51108 7.53790 7.92993 8.04519 8.60155 9.16634 9.52457 10.04401 10.74413 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.036910 B = 0.001322 C = 0.001310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.421719 B =21175.121965 C =21366.824544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.515 5.515 3 C 0.044 3.956 4 C 0.121 3.879 5 N -0.723 5.723 6 C 0.542 3.458 7 O -0.536 6.536 8 C -0.173 4.173 9 H 0.126 0.874 10 C -0.139 4.139 11 C -0.091 4.091 12 H 0.133 0.867 13 C -0.008 4.008 14 C -0.175 4.175 15 C 0.101 3.899 16 N -0.490 5.490 17 C 0.101 3.899 18 C -0.163 4.163 19 C 0.047 3.953 20 C 0.443 3.557 21 O -0.577 6.577 22 N -0.563 5.563 23 C -0.300 4.300 24 H 0.103 0.897 25 C 0.023 3.977 26 N -0.902 5.902 27 Si 0.931 3.069 28 H -0.274 1.274 29 H -0.284 1.284 30 H -0.273 1.273 31 H 0.099 0.901 32 H 0.062 0.938 33 H 0.016 0.984 34 H 0.079 0.921 35 H 0.036 0.964 36 H 0.071 0.929 37 H 0.080 0.920 38 H 0.401 0.599 39 H 0.110 0.890 40 H 0.110 0.890 41 H 0.136 0.864 42 H 0.156 0.844 43 H 0.157 0.843 44 H 0.138 0.862 45 H 0.049 0.951 46 H 0.089 0.911 47 H 0.392 0.608 48 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.788 29.148 8.475 30.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.239 5.239 3 C -0.085 4.085 4 C -0.003 4.003 5 N -0.374 5.374 6 C 0.327 3.673 7 O -0.412 6.412 8 C -0.194 4.194 9 H 0.144 0.856 10 C -0.177 4.177 11 C -0.110 4.110 12 H 0.151 0.849 13 C -0.016 4.016 14 C -0.194 4.194 15 C -0.056 4.056 16 N -0.199 5.199 17 C -0.055 4.055 18 C -0.183 4.183 19 C -0.084 4.084 20 C 0.228 3.772 21 O -0.461 6.461 22 N -0.200 5.200 23 C -0.429 4.429 24 H 0.121 0.879 25 C -0.179 4.179 26 N -0.544 5.544 27 Si 0.758 3.242 28 H -0.199 1.199 29 H -0.210 1.210 30 H -0.199 1.199 31 H 0.117 0.883 32 H 0.081 0.919 33 H 0.034 0.966 34 H 0.098 0.902 35 H 0.054 0.946 36 H 0.090 0.910 37 H 0.099 0.901 38 H 0.235 0.765 39 H 0.128 0.872 40 H 0.128 0.872 41 H 0.154 0.846 42 H 0.174 0.826 43 H 0.175 0.825 44 H 0.156 0.844 45 H 0.067 0.933 46 H 0.107 0.893 47 H 0.225 0.775 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.990 29.111 9.953 30.830 hybrid contribution 0.278 -1.125 -1.656 2.021 sum 2.268 27.987 8.297 29.278 Atomic orbital electron populations 1.22646 0.86458 1.04992 0.98952 1.61454 1.08971 1.10352 1.43144 1.22244 1.00788 0.89873 0.95566 1.21384 0.99656 0.80431 0.98784 1.45842 1.57653 1.14373 1.19572 1.19498 0.79528 0.85769 0.82462 1.90736 1.40715 1.75418 1.34364 1.22336 1.05653 0.94444 0.96989 0.85562 1.23180 0.90734 1.03234 1.00523 1.21109 1.00695 0.89854 0.99294 0.84925 1.19528 0.93605 0.93653 0.94776 1.22080 1.00471 0.95321 1.01551 1.22774 0.94304 0.92779 0.95724 1.67692 1.01761 1.40113 1.10346 1.22807 0.97723 0.90765 0.94243 1.22057 0.97949 0.96524 1.01754 1.21872 1.00668 0.94262 0.91584 1.19697 0.85581 0.86583 0.85307 1.90491 1.43872 1.80094 1.31611 1.41846 1.49391 1.07351 1.21419 1.19656 1.33000 0.82284 1.07992 0.87936 1.25253 0.96761 1.00565 0.95274 1.69603 1.37961 1.35873 1.10933 0.85918 0.78913 0.81672 0.77726 1.19916 1.20986 1.19873 0.88256 0.91917 0.96557 0.90231 0.94557 0.91048 0.90133 0.76550 0.87204 0.87151 0.84581 0.82646 0.82548 0.84446 0.93339 0.89317 0.77507 0.91829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.01 60.07 0.54 0.82 16 2 N -0.51 -8.23 4.50 -244.37 -1.10 -9.33 16 3 C 0.04 0.50 5.07 -3.82 -0.02 0.48 16 4 C 0.12 1.38 5.61 -4.04 -0.02 1.36 16 5 N -0.72 -6.36 5.56 -60.29 -0.33 -6.69 16 6 C 0.54 5.51 7.61 -10.99 -0.08 5.43 16 7 O -0.54 -7.72 16.26 5.55 0.09 -7.63 16 8 C -0.17 -1.16 5.84 -91.78 -0.54 -1.69 16 9 H 0.13 0.62 8.14 -51.93 -0.42 0.19 16 10 C -0.14 -0.75 9.59 -26.70 -0.26 -1.01 16 11 C -0.09 -0.63 5.59 -91.74 -0.51 -1.14 16 12 H 0.13 1.10 7.67 -51.93 -0.40 0.70 16 13 C -0.01 -0.05 5.64 -104.32 -0.59 -0.64 16 14 C -0.17 -1.00 9.39 -39.44 -0.37 -1.37 16 15 C 0.10 0.66 11.18 -17.54 -0.20 0.46 16 16 N -0.49 -4.14 10.36 -13.25 -0.14 -4.27 16 17 C 0.10 0.71 11.18 -17.55 -0.20 0.52 16 18 C -0.16 -1.10 9.84 -39.45 -0.39 -1.49 16 19 C 0.05 0.81 5.45 -4.98 -0.03 0.79 16 20 C 0.44 10.26 7.51 -10.99 -0.08 10.18 16 21 O -0.58 -15.34 13.88 5.54 0.08 -15.26 16 22 N -0.56 -14.04 5.29 -10.97 -0.06 -14.10 16 23 C -0.30 -8.27 9.68 -14.94 -0.14 -8.41 16 24 H 0.10 2.96 7.16 -52.49 -0.38 2.59 16 25 C 0.02 0.61 5.50 -17.47 -0.10 0.52 16 26 N -0.90 -24.24 13.05 55.50 0.72 -23.52 16 27 Si 0.93 20.89 29.55 -169.99 -5.02 15.87 16 28 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 29 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 30 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 31 H 0.10 1.94 5.88 -51.93 -0.31 1.64 16 32 H 0.06 0.89 6.30 -51.93 -0.33 0.56 16 33 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 34 H 0.08 0.80 7.93 -51.93 -0.41 0.39 16 35 H 0.04 0.37 8.12 -51.93 -0.42 -0.05 16 36 H 0.07 0.90 6.47 -51.93 -0.34 0.56 16 37 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.40 2.30 8.47 -40.82 -0.35 1.95 16 39 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.11 0.36 6.26 -51.93 -0.32 0.04 16 41 H 0.14 0.46 6.16 -52.49 -0.32 0.14 16 42 H 0.16 0.62 8.06 -52.49 -0.42 0.20 16 43 H 0.16 0.73 8.06 -52.48 -0.42 0.30 16 44 H 0.14 0.75 8.06 -52.49 -0.42 0.32 16 45 H 0.05 0.75 8.12 -51.93 -0.42 0.33 16 46 H 0.09 1.35 7.93 -51.93 -0.41 0.94 16 47 H 0.39 9.30 7.90 -40.82 -0.32 8.97 16 48 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 402.88 15.07 6.07 6.07 Total: -1.00 -34.75 402.88 -9.49 -44.24 By element: Atomic # 1 Polarization: 16.65 SS G_CDS: -6.82 Total: 9.83 kcal Atomic # 6 Polarization: 7.77 SS G_CDS: -2.98 Total: 4.79 kcal Atomic # 7 Polarization: -57.01 SS G_CDS: -0.91 Total: -57.91 kcal Atomic # 8 Polarization: -23.06 SS G_CDS: 0.17 Total: -22.89 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -34.75 -9.49 -44.24 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663185080.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.906 kcal (2) G-P(sol) polarization free energy of solvation -34.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds