Wall clock time and date at job start Wed Apr 1 2020 03:38:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46902 * 110.99573 * 2 1 4 4 C 1.53000 * 109.47107 * 66.05001 * 3 2 1 5 5 N 1.46502 * 109.47233 * 179.97438 * 4 3 2 6 6 C 1.34770 * 120.00552 * 179.97438 * 5 4 3 7 7 O 1.21284 * 119.99460 * 359.97438 * 6 5 4 8 8 C 1.50702 * 120.00447 * 179.97438 * 6 5 4 9 9 H 1.08999 * 115.54297 * 34.42097 * 8 6 5 10 10 C 1.52994 * 117.50101 * 248.74797 * 8 6 5 11 11 C 1.52993 * 117.50101 * 180.08484 * 8 6 5 12 12 H 1.09001 * 117.50072 * 0.02562 * 11 8 6 13 13 C 1.50704 * 117.50320 * 215.00681 * 11 8 6 14 14 C 1.38652 * 120.78157 * 299.72179 * 13 11 8 15 15 C 1.38211 * 119.15566 * 179.79866 * 14 13 11 16 16 N 1.31871 * 120.76495 * 0.48194 * 15 14 13 17 17 C 1.31871 * 121.72254 * 359.74840 * 16 15 14 18 18 C 1.38206 * 120.76720 * 0.02562 * 17 16 15 19 19 C 1.46898 * 110.99888 * 236.04634 * 2 1 3 20 20 C 1.50697 * 109.47095 * 293.94952 * 19 2 1 21 21 O 1.21295 * 120.00153 * 0.02562 * 20 19 2 22 22 N 1.34777 * 119.99926 * 180.02562 * 20 19 2 23 23 C 1.37092 * 120.00019 * 180.02562 * 22 20 19 24 24 H 1.07998 * 119.99935 * 359.97438 * 23 22 20 25 25 C 1.38949 * 120.00187 * 180.02562 * 23 22 20 26 26 N 1.31417 * 120.00004 * 359.97438 * 25 23 22 27 27 Si 1.86803 * 120.00359 * 180.02562 * 25 23 22 28 28 H 1.48497 * 109.47063 * 59.99536 * 27 25 23 29 29 H 1.48495 * 109.47265 * 180.02562 * 27 25 23 30 30 H 1.48503 * 109.46931 * 299.99907 * 27 25 23 31 31 H 1.09001 * 109.46544 * 183.95424 * 1 2 3 32 32 H 1.09001 * 109.47272 * 303.95030 * 1 2 3 33 33 H 1.09000 * 109.47033 * 63.95479 * 1 2 3 34 34 H 1.09001 * 109.46557 * 186.04354 * 3 2 1 35 35 H 1.08994 * 109.47575 * 306.04356 * 3 2 1 36 36 H 1.09001 * 109.46884 * 299.99153 * 4 3 2 37 37 H 1.09001 * 109.47688 * 59.99882 * 4 3 2 38 38 H 0.97004 * 119.99289 * 359.97438 * 5 4 3 39 39 H 1.09002 * 117.50071 * 359.97438 * 10 8 6 40 40 H 1.08998 * 117.49682 * 145.01739 * 10 8 6 41 41 H 1.07998 * 120.42691 * 0.02562 * 14 13 11 42 42 H 1.07993 * 119.61674 * 180.20947 * 15 14 13 43 43 H 1.08005 * 119.61268 * 180.02562 * 17 16 15 44 44 H 1.07999 * 120.41347 * 180.02562 * 18 17 16 45 45 H 1.08992 * 109.47062 * 53.95734 * 19 2 1 46 46 H 1.09003 * 109.46753 * 173.95421 * 19 2 1 47 47 H 0.96998 * 120.00288 * 359.97438 * 22 20 19 48 48 H 0.97000 * 120.00335 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6314 2.0574 1.3183 5 7 2.1569 3.4250 1.3186 6 6 1.9557 4.2241 2.3850 7 8 1.3392 3.8111 3.3444 8 6 2.4967 5.6306 2.3855 9 1 2.4994 6.1335 1.4185 10 6 3.6419 5.9467 3.3495 11 6 2.2367 6.4871 3.6263 12 1 1.6748 6.0331 4.4426 13 6 2.0042 7.9614 3.4181 14 6 2.9760 8.7570 2.8306 15 6 2.7256 10.1045 2.6520 16 7 1.5831 10.6357 3.0414 17 6 0.6385 9.9104 3.6077 18 6 0.8160 8.5555 3.8147 19 6 1.9955 -0.7660 -1.1376 20 6 1.6370 -2.2204 -0.9728 21 8 1.0048 -2.5831 -0.0033 22 7 2.0190 -3.1181 -1.9027 23 6 1.6925 -4.4411 -1.7531 24 1 1.1295 -4.7641 -0.8898 25 6 2.0867 -5.3667 -2.7114 26 7 2.7721 -4.9738 -3.7616 27 14 1.6412 -7.1694 -2.5080 28 1 0.1639 -7.3116 -2.4581 29 1 2.1751 -7.9440 -3.6569 30 1 2.2310 -7.6857 -1.2467 31 1 -0.3632 -1.0253 0.0709 32 1 -0.3634 0.5739 0.8525 33 1 -0.3633 0.4512 -0.9233 34 1 3.0797 1.3444 -0.1082 35 1 1.5611 1.9274 -0.8309 36 1 0.5472 2.0845 1.4265 37 1 2.0658 1.5016 2.1492 38 1 2.6496 3.7553 0.5511 39 1 4.0038 5.1375 3.9837 40 1 4.3980 6.6579 3.0168 41 1 3.9152 8.3287 2.5133 42 1 3.4759 10.7304 2.1921 43 1 -0.2845 10.3807 3.9132 44 1 0.0384 7.9668 4.2786 45 1 1.5612 -0.3872 -2.0627 46 1 3.0798 -0.6611 -1.1756 47 1 2.5243 -2.8280 -2.6782 48 1 3.0477 -5.6200 -4.4305 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663185080.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:38:48 Heat of formation + Delta-G solvation = -26.499428 kcal Electronic energy + Delta-G solvation = -28088.252651 eV Core-core repulsion = 23950.142337 eV Total energy + Delta-G solvation = -4138.110314 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.179 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.54997 -40.74504 -40.33638 -38.40213 -37.65297 -36.00867 -35.49973 -33.26870 -32.98469 -32.09224 -30.81362 -29.13355 -27.17421 -26.24163 -25.44494 -24.56457 -23.99020 -22.33475 -21.91130 -21.10400 -20.91145 -19.84717 -18.73629 -17.86379 -17.64746 -17.30047 -17.03435 -16.88949 -16.55348 -16.42263 -16.26092 -16.04457 -15.60183 -15.45525 -15.05347 -14.94066 -14.80338 -14.64256 -14.47452 -14.28546 -13.76690 -13.54767 -13.44084 -13.03511 -12.97387 -12.93667 -12.59103 -12.57688 -12.54800 -12.41209 -12.16925 -12.09858 -12.07795 -11.62345 -11.44865 -11.04877 -10.43237 -10.30338 -10.25378 -10.14288 -10.07654 -9.98569 -9.24425 -8.45272 -5.93540 0.20024 0.21643 1.40271 1.42361 1.43345 1.52748 1.93177 2.07603 2.30750 2.66333 2.87586 3.03766 3.21827 3.37712 3.44713 3.59132 3.62481 3.77074 3.81349 3.91413 4.05630 4.08077 4.18169 4.22915 4.25704 4.28166 4.36535 4.45262 4.53205 4.62143 4.62932 4.64976 4.77549 4.84725 4.90319 4.93641 4.93988 4.98876 5.12857 5.20880 5.33916 5.42303 5.42519 5.78605 5.85056 6.04663 6.16539 6.50616 6.62899 7.04769 7.15015 7.19996 7.58685 8.15262 8.71756 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.036910 B = 0.001322 C = 0.001310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.421719 B =21175.121965 C =21366.824544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.540 5.540 3 C 0.053 3.947 4 C 0.129 3.871 5 N -0.708 5.708 6 C 0.536 3.464 7 O -0.586 6.586 8 C -0.168 4.168 9 H 0.154 0.846 10 C -0.121 4.121 11 C -0.100 4.100 12 H 0.110 0.890 13 C -0.014 4.014 14 C -0.168 4.168 15 C 0.091 3.909 16 N -0.519 5.519 17 C 0.090 3.910 18 C -0.175 4.175 19 C 0.061 3.939 20 C 0.439 3.561 21 O -0.617 6.617 22 N -0.573 5.573 23 C -0.334 4.334 24 H 0.077 0.923 25 C -0.010 4.010 26 N -0.919 5.919 27 Si 0.990 3.010 28 H -0.273 1.273 29 H -0.270 1.270 30 H -0.273 1.273 31 H 0.056 0.944 32 H 0.074 0.926 33 H 0.034 0.966 34 H 0.100 0.900 35 H 0.061 0.939 36 H 0.056 0.944 37 H 0.055 0.945 38 H 0.419 0.581 39 H 0.102 0.898 40 H 0.141 0.859 41 H 0.165 0.835 42 H 0.179 0.821 43 H 0.171 0.829 44 H 0.141 0.859 45 H 0.073 0.927 46 H 0.116 0.884 47 H 0.397 0.603 48 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.588 30.813 6.997 31.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.265 5.265 3 C -0.075 4.075 4 C 0.005 3.995 5 N -0.360 5.360 6 C 0.324 3.676 7 O -0.467 6.467 8 C -0.190 4.190 9 H 0.171 0.829 10 C -0.158 4.158 11 C -0.119 4.119 12 H 0.128 0.872 13 C -0.022 4.022 14 C -0.187 4.187 15 C -0.065 4.065 16 N -0.229 5.229 17 C -0.066 4.066 18 C -0.195 4.195 19 C -0.070 4.070 20 C 0.226 3.774 21 O -0.503 6.503 22 N -0.211 5.211 23 C -0.464 4.464 24 H 0.095 0.905 25 C -0.210 4.210 26 N -0.560 5.560 27 Si 0.814 3.186 28 H -0.198 1.198 29 H -0.194 1.194 30 H -0.199 1.199 31 H 0.075 0.925 32 H 0.092 0.908 33 H 0.052 0.948 34 H 0.119 0.881 35 H 0.079 0.921 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.257 0.743 39 H 0.120 0.880 40 H 0.159 0.841 41 H 0.182 0.818 42 H 0.196 0.804 43 H 0.188 0.812 44 H 0.159 0.841 45 H 0.091 0.909 46 H 0.134 0.866 47 H 0.231 0.769 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.821 30.814 8.430 32.174 hybrid contribution -0.295 -1.590 -1.131 1.974 sum 3.526 29.224 7.299 30.327 Atomic orbital electron populations 1.22476 0.86968 1.02569 1.00410 1.61335 1.08843 1.13204 1.43079 1.22245 1.01948 0.87352 0.95969 1.21108 0.98654 0.81604 0.98176 1.45662 1.57161 1.13138 1.20042 1.20149 0.78647 0.87056 0.81743 1.90720 1.43033 1.76646 1.36275 1.22326 1.06272 0.92094 0.98261 0.82884 1.23312 0.90426 1.03027 0.99069 1.20990 1.01997 0.89991 0.98931 0.87167 1.19602 0.93939 0.93520 0.95166 1.22327 1.01065 0.94832 1.00519 1.23236 0.94221 0.93622 0.95469 1.67704 1.02798 1.41069 1.11347 1.23071 0.98260 0.90968 0.94336 1.22211 0.98509 0.96677 1.02110 1.21740 1.02388 0.89870 0.93006 1.20846 0.83743 0.88939 0.83872 1.90475 1.45209 1.81508 1.33100 1.41906 1.50054 1.06953 1.22182 1.19608 1.34456 0.84190 1.08102 0.90473 1.25976 0.96251 1.04117 0.94686 1.69657 1.38013 1.37176 1.11185 0.85031 0.78571 0.77015 0.77977 1.19829 1.19440 1.19865 0.92525 0.90775 0.94779 0.88136 0.92053 0.92557 0.92624 0.74302 0.88000 0.84077 0.81753 0.80404 0.81175 0.84080 0.90928 0.86625 0.76938 0.91326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.75 9.01 127.69 1.15 1.90 16 2 N -0.54 -16.46 4.50 -927.05 -4.17 -20.63 16 3 C 0.05 1.04 5.07 86.30 0.44 1.48 16 4 C 0.13 2.79 5.61 86.38 0.48 3.27 16 5 N -0.71 -10.94 5.56 -463.06 -2.57 -13.51 16 6 C 0.54 10.34 7.61 87.66 0.67 11.00 16 7 O -0.59 -17.27 16.26 -3.04 -0.05 -17.32 16 8 C -0.17 -1.86 5.84 -11.54 -0.07 -1.93 16 9 H 0.15 0.89 8.14 -2.39 -0.02 0.87 16 10 C -0.12 -0.99 9.59 30.62 0.29 -0.69 16 11 C -0.10 -1.27 5.59 -11.52 -0.06 -1.34 16 12 H 0.11 1.91 7.67 -2.39 -0.02 1.89 16 13 C -0.01 -0.17 5.64 -19.67 -0.11 -0.28 16 14 C -0.17 -1.46 9.39 22.36 0.21 -1.25 16 15 C 0.09 1.00 11.18 84.68 0.95 1.95 16 16 N -0.52 -8.28 10.36 -195.84 -2.03 -10.31 16 17 C 0.09 1.23 11.18 84.68 0.95 2.18 16 18 C -0.18 -2.32 9.84 22.36 0.22 -2.10 16 19 C 0.06 1.97 5.45 85.56 0.47 2.43 16 20 C 0.44 20.47 7.51 87.66 0.66 21.13 16 21 O -0.62 -33.91 13.88 -3.08 -0.04 -33.96 16 22 N -0.57 -28.90 5.29 -306.99 -1.62 -30.52 16 23 C -0.33 -18.84 9.68 84.04 0.81 -18.03 16 24 H 0.08 4.66 7.16 -2.91 -0.02 4.64 16 25 C -0.01 -0.55 5.50 84.93 0.47 -0.09 16 26 N -0.92 -48.92 13.05 21.66 0.28 -48.64 16 27 Si 0.99 42.73 29.55 68.60 2.03 44.76 16 28 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 29 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 30 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 31 H 0.06 2.29 5.88 -2.39 -0.01 2.27 16 32 H 0.07 2.11 6.30 -2.39 -0.02 2.10 16 33 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.10 1.62 7.93 -2.39 -0.02 1.60 16 35 H 0.06 0.97 8.12 -2.39 -0.02 0.95 16 36 H 0.06 1.40 6.47 -2.39 -0.02 1.38 16 37 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.42 3.29 8.47 -92.71 -0.79 2.51 16 39 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.14 0.28 6.26 -2.39 -0.01 0.26 16 41 H 0.17 0.37 6.16 -2.91 -0.02 0.36 16 42 H 0.18 0.95 8.06 -2.91 -0.02 0.93 16 43 H 0.17 1.57 8.06 -2.91 -0.02 1.55 16 44 H 0.14 1.61 8.06 -2.91 -0.02 1.59 16 45 H 0.07 2.04 8.12 -2.39 -0.02 2.02 16 46 H 0.12 3.14 7.93 -2.39 -0.02 3.12 16 47 H 0.40 18.79 7.90 -92.71 -0.73 18.06 16 48 H 0.28 13.86 8.31 -92.71 -0.77 13.09 16 Total: -1.00 -78.95 402.88 -1.17 -80.12 By element: Atomic # 1 Polarization: 30.87 SS G_CDS: -0.51 Total: 30.37 kcal Atomic # 6 Polarization: 12.13 SS G_CDS: 7.52 Total: 19.65 kcal Atomic # 7 Polarization: -113.49 SS G_CDS: -10.11 Total: -123.61 kcal Atomic # 8 Polarization: -51.19 SS G_CDS: -0.09 Total: -51.28 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.76 kcal Total: -78.95 -1.17 -80.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663185080.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.616 kcal (2) G-P(sol) polarization free energy of solvation -78.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds