Wall clock time and date at job start Wed Apr 1 2020 03:38:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46898 * 110.99932 * 2 1 4 4 C 1.52997 * 109.46975 * 293.95124 * 3 2 1 5 5 N 1.46508 * 109.47196 * 179.97438 * 4 3 2 6 6 C 1.34770 * 120.00011 * 179.97438 * 5 4 3 7 7 O 1.21283 * 120.00322 * 354.54255 * 6 5 4 8 8 C 1.50702 * 119.99771 * 174.54508 * 6 5 4 9 9 C 1.50698 * 115.54989 * 302.82435 * 8 6 5 10 10 C 1.38668 * 120.42067 * 328.91053 * 9 8 6 11 11 C 1.38625 * 118.42566 * 180.02562 * 10 9 8 12 12 C 1.38228 * 119.15563 * 0.02562 * 11 10 9 13 13 N 1.31853 * 120.76901 * 359.97438 * 12 11 10 14 14 C 1.31885 * 121.72017 * 359.70866 * 13 12 11 15 15 C 1.53006 * 117.49863 * 157.15786 * 8 6 5 16 16 C 1.52999 * 117.49875 * 88.49771 * 8 6 5 17 17 C 1.46902 * 110.99873 * 123.95087 * 2 1 3 18 18 C 1.50700 * 109.46944 * 66.04593 * 17 2 1 19 19 O 1.21291 * 120.00166 * 0.02562 * 18 17 2 20 20 N 1.34773 * 120.00151 * 179.97438 * 18 17 2 21 21 C 1.37094 * 120.00437 * 179.97438 * 20 18 17 22 22 H 1.07998 * 119.99943 * 0.02562 * 21 20 18 23 23 C 1.38949 * 120.00254 * 180.02562 * 21 20 18 24 24 N 1.31411 * 119.99951 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 120.00203 * 180.02562 * 23 21 20 26 26 H 1.48507 * 109.46720 * 359.97438 * 25 23 21 27 27 H 1.48505 * 109.47304 * 119.99765 * 25 23 21 28 28 H 1.48498 * 109.47375 * 240.00193 * 25 23 21 29 29 H 1.09006 * 109.46980 * 60.00136 * 1 2 3 30 30 H 1.09000 * 109.47013 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47289 * 300.00332 * 1 2 3 32 32 H 1.08996 * 109.47044 * 173.95429 * 3 2 1 33 33 H 1.08994 * 109.47253 * 53.94972 * 3 2 1 34 34 H 1.08998 * 109.47496 * 299.99980 * 4 3 2 35 35 H 1.08998 * 109.47488 * 60.00265 * 4 3 2 36 36 H 0.96998 * 119.99524 * 0.02562 * 5 4 3 37 37 H 1.08005 * 120.78887 * 0.02562 * 10 9 8 38 38 H 1.08000 * 120.42760 * 180.02562 * 11 10 9 39 39 H 1.08007 * 119.61463 * 179.97438 * 12 11 10 40 40 H 1.08004 * 119.61722 * 180.31430 * 14 13 12 41 41 H 1.08999 * 117.49907 * 359.97438 * 15 8 6 42 42 H 1.08997 * 117.49855 * 145.01993 * 15 8 6 43 43 H 1.09000 * 117.49571 * 214.97796 * 16 8 6 44 44 H 1.09000 * 117.50287 * 359.97438 * 16 8 6 45 45 H 1.08995 * 109.47126 * 186.04702 * 17 2 1 46 46 H 1.08993 * 109.47222 * 306.04951 * 17 2 1 47 47 H 0.97001 * 119.99917 * 0.02562 * 20 18 17 48 48 H 0.96998 * 119.99915 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6315 2.0573 -1.3183 5 7 2.1560 3.4253 -1.3181 6 6 1.9554 4.2241 -2.3849 7 8 1.4284 3.7813 -3.3835 8 6 2.3861 5.6674 -2.3370 9 6 1.7950 6.4853 -1.2178 10 6 0.5282 6.1987 -0.7321 11 6 0.0246 6.9779 0.2980 12 6 0.7963 8.0077 0.8026 13 7 1.9973 8.2515 0.3161 14 6 2.5106 7.5271 -0.6591 15 6 2.6394 6.3737 -3.6705 16 6 3.8171 5.9924 -2.7700 17 6 1.9955 -0.7659 1.1376 18 6 1.6369 -2.2204 0.9729 19 8 1.0054 -2.5833 0.0031 20 7 2.0188 -3.1181 1.9028 21 6 1.6922 -4.4411 1.7533 22 1 1.1292 -4.7641 0.8901 23 6 2.0855 -5.3665 2.7123 24 7 2.7701 -4.9734 3.7629 25 14 1.6410 -7.1694 2.5082 26 1 0.8728 -7.3504 1.2502 27 1 2.8827 -7.9820 2.4518 28 1 0.8137 -7.6088 3.6604 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 3.0797 1.3444 0.1082 33 1 1.5611 1.9273 0.8308 34 1 2.0658 1.5015 -2.1492 35 1 0.5472 2.0844 -1.4266 36 1 2.6482 3.7559 -0.5504 37 1 -0.0524 5.3877 -1.1464 38 1 -0.9582 6.7829 0.7011 39 1 0.4111 8.6197 1.6049 40 1 3.4999 7.7536 -1.0286 41 1 2.4950 5.7942 -4.5823 42 1 2.3789 7.4299 -3.7380 43 1 4.3309 6.7980 -2.2455 44 1 4.4473 5.1622 -3.0891 45 1 3.0797 -0.6611 1.1757 46 1 1.5611 -0.3872 2.0628 47 1 2.5241 -2.8279 2.6783 48 1 3.0449 -5.6195 4.4321 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663258089.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:38:23 Heat of formation + Delta-G solvation = 4.353138 kcal Electronic energy + Delta-G solvation = -29174.805792 eV Core-core repulsion = 25038.033346 eV Total energy + Delta-G solvation = -4136.772446 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.25160 -39.83466 -38.71518 -37.32456 -36.62821 -34.74766 -33.83148 -32.89673 -31.31338 -31.27040 -29.72012 -27.76529 -26.02601 -25.05248 -24.14641 -23.93191 -22.79257 -22.51594 -21.29476 -19.96431 -19.19562 -18.16785 -17.87395 -17.37391 -16.62667 -16.38226 -16.04805 -15.94312 -15.54132 -15.17546 -14.87474 -14.85676 -14.59739 -14.32401 -14.08309 -13.94742 -13.57499 -13.47495 -13.41359 -13.13729 -12.99585 -12.52073 -12.16607 -11.94978 -11.94383 -11.58905 -11.50113 -11.44683 -11.31315 -11.18074 -11.09692 -10.97548 -10.37176 -10.35314 -10.24161 -10.18081 -9.78686 -9.50819 -9.34944 -9.26673 -8.51220 -8.01496 -7.92204 -6.43665 -3.84366 0.56764 0.79742 2.18411 2.69956 3.10599 3.15076 3.25935 3.33213 3.48764 3.81343 3.87544 3.97265 4.08215 4.20280 4.23638 4.32104 4.39698 4.47394 4.50471 4.74163 4.78313 4.92046 4.97158 5.07068 5.08298 5.21497 5.22738 5.32546 5.34340 5.40195 5.59281 5.62101 5.63586 5.65532 5.74669 5.78273 5.84057 5.89042 5.96196 6.14617 6.19166 6.24878 6.51341 7.12888 7.20526 7.28299 7.48794 7.53944 7.90298 8.04651 8.59676 9.16489 9.52244 10.03934 10.74133 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.019589 B = 0.001754 C = 0.001690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.054549 B =15961.217655 C =16565.314503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.514 5.514 3 C 0.045 3.955 4 C 0.121 3.879 5 N -0.721 5.721 6 C 0.553 3.447 7 O -0.529 6.529 8 C -0.125 4.125 9 C -0.094 4.094 10 C -0.064 4.064 11 C -0.164 4.164 12 C 0.095 3.905 13 N -0.480 5.480 14 C 0.102 3.898 15 C -0.130 4.130 16 C -0.152 4.152 17 C 0.047 3.953 18 C 0.443 3.557 19 O -0.576 6.576 20 N -0.564 5.564 21 C -0.298 4.298 22 H 0.104 0.896 23 C 0.021 3.979 24 N -0.902 5.902 25 Si 0.929 3.071 26 H -0.268 1.268 27 H -0.281 1.281 28 H -0.282 1.282 29 H 0.062 0.938 30 H 0.098 0.902 31 H 0.015 0.985 32 H 0.079 0.921 33 H 0.036 0.964 34 H 0.082 0.918 35 H 0.070 0.930 36 H 0.401 0.599 37 H 0.132 0.868 38 H 0.138 0.862 39 H 0.158 0.842 40 H 0.157 0.843 41 H 0.113 0.887 42 H 0.106 0.894 43 H 0.110 0.890 44 H 0.108 0.892 45 H 0.089 0.911 46 H 0.048 0.952 47 H 0.392 0.608 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.627 27.789 -5.648 28.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.239 5.239 3 C -0.084 4.084 4 C -0.002 4.002 5 N -0.372 5.372 6 C 0.338 3.662 7 O -0.404 6.404 8 C -0.129 4.129 9 C -0.097 4.097 10 C -0.090 4.090 11 C -0.184 4.184 12 C -0.061 4.061 13 N -0.188 5.188 14 C -0.055 4.055 15 C -0.168 4.168 16 C -0.189 4.189 17 C -0.084 4.084 18 C 0.229 3.771 19 O -0.460 6.460 20 N -0.201 5.201 21 C -0.427 4.427 22 H 0.122 0.878 23 C -0.180 4.180 24 N -0.543 5.543 25 Si 0.757 3.243 26 H -0.192 1.192 27 H -0.207 1.207 28 H -0.208 1.208 29 H 0.081 0.919 30 H 0.117 0.883 31 H 0.034 0.966 32 H 0.098 0.902 33 H 0.054 0.946 34 H 0.100 0.900 35 H 0.089 0.911 36 H 0.235 0.765 37 H 0.150 0.850 38 H 0.156 0.844 39 H 0.175 0.825 40 H 0.175 0.825 41 H 0.131 0.869 42 H 0.124 0.876 43 H 0.128 0.872 44 H 0.126 0.874 45 H 0.107 0.893 46 H 0.066 0.934 47 H 0.225 0.775 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.498 27.532 -6.932 28.396 hybrid contribution -0.448 -0.939 1.432 1.770 sum 0.050 26.593 -5.501 27.156 Atomic orbital electron populations 1.22628 0.86486 1.04793 0.99039 1.61446 1.08933 1.10344 1.43127 1.22242 1.00824 0.89818 0.95537 1.21384 0.99469 0.80478 0.98881 1.45865 1.57592 1.14214 1.19575 1.19200 0.78543 0.85644 0.82841 1.90746 1.42754 1.75479 1.31464 1.20072 1.02191 0.92888 0.97743 1.19773 0.95326 0.97641 0.96914 1.21465 0.94266 0.98440 0.94815 1.22185 1.01780 0.96826 0.97632 1.22842 0.89940 0.95259 0.98085 1.67757 1.13120 1.27392 1.10492 1.22673 0.99594 0.91042 0.92179 1.23129 0.99783 1.01083 0.92762 1.23230 0.89088 1.04075 1.02523 1.21868 1.00690 0.94258 0.91603 1.19694 0.85549 0.86579 0.85299 1.90494 1.43883 1.80083 1.31558 1.41868 1.49392 1.07387 1.21444 1.19750 1.32818 0.82239 1.07916 0.87823 1.25268 0.96832 1.00609 0.95310 1.69618 1.38113 1.35678 1.10931 0.85800 0.78219 0.81893 0.78434 1.19194 1.20740 1.20792 0.91915 0.88324 0.96639 0.90238 0.94598 0.90002 0.91148 0.76546 0.84983 0.84403 0.82511 0.82550 0.86878 0.87609 0.87204 0.87380 0.89308 0.93350 0.77509 0.91928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 8.96 60.07 0.54 0.83 16 2 N -0.51 -8.23 4.50 -244.38 -1.10 -9.33 16 3 C 0.04 0.52 5.07 -3.83 -0.02 0.50 16 4 C 0.12 1.39 5.60 -4.04 -0.02 1.37 16 5 N -0.72 -6.71 5.53 -60.29 -0.33 -7.04 16 6 C 0.55 5.89 6.08 -10.99 -0.07 5.82 16 7 O -0.53 -7.77 16.52 5.56 0.09 -7.68 16 8 C -0.12 -0.97 2.38 -156.81 -0.37 -1.34 16 9 C -0.09 -0.71 5.46 -104.48 -0.57 -1.28 16 10 C -0.06 -0.50 9.44 -39.28 -0.37 -0.87 16 11 C -0.16 -1.09 10.11 -39.44 -0.40 -1.49 16 12 C 0.10 0.67 11.18 -17.55 -0.20 0.48 16 13 N -0.48 -4.13 10.36 -13.25 -0.14 -4.27 16 14 C 0.10 0.75 10.54 -17.55 -0.18 0.56 16 15 C -0.13 -0.88 9.73 -26.69 -0.26 -1.14 16 16 C -0.15 -0.84 9.59 -26.69 -0.26 -1.10 16 17 C 0.05 0.81 5.45 -4.97 -0.03 0.78 16 18 C 0.44 10.28 7.47 -10.99 -0.08 10.20 16 19 O -0.58 -15.33 13.91 5.55 0.08 -15.25 16 20 N -0.56 -14.09 5.29 -10.97 -0.06 -14.15 16 21 C -0.30 -8.22 9.68 -14.94 -0.14 -8.36 16 22 H 0.10 3.01 7.16 -52.49 -0.38 2.64 16 23 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 24 N -0.90 -24.33 13.05 55.50 0.72 -23.61 16 25 Si 0.93 20.94 29.55 -169.99 -5.02 15.92 16 26 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 27 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 28 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 29 H 0.06 0.89 6.47 -51.93 -0.34 0.55 16 30 H 0.10 1.92 5.83 -51.93 -0.30 1.62 16 31 H 0.02 0.22 8.14 -51.93 -0.42 -0.21 16 32 H 0.08 0.84 7.93 -51.93 -0.41 0.42 16 33 H 0.04 0.37 8.12 -51.93 -0.42 -0.05 16 34 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.07 0.87 6.55 -51.93 -0.34 0.53 16 36 H 0.40 2.88 8.48 -40.82 -0.35 2.54 16 37 H 0.13 1.09 7.47 -52.48 -0.39 0.70 16 38 H 0.14 0.63 8.06 -52.49 -0.42 0.21 16 39 H 0.16 0.72 8.06 -52.48 -0.42 0.29 16 40 H 0.16 0.80 5.96 -52.48 -0.31 0.49 16 41 H 0.11 0.89 7.86 -51.93 -0.41 0.49 16 42 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.11 0.39 6.12 -51.93 -0.32 0.07 16 44 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.09 1.37 7.93 -51.93 -0.41 0.95 16 46 H 0.05 0.76 8.12 -51.93 -0.42 0.34 16 47 H 0.39 9.33 7.90 -40.82 -0.32 9.01 16 48 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 LS Contribution 401.17 15.07 6.05 6.05 Total: -1.00 -34.06 401.17 -9.04 -43.10 By element: Atomic # 1 Polarization: 17.63 SS G_CDS: -6.79 Total: 10.84 kcal Atomic # 6 Polarization: 7.95 SS G_CDS: -2.53 Total: 5.42 kcal Atomic # 7 Polarization: -57.49 SS G_CDS: -0.90 Total: -58.40 kcal Atomic # 8 Polarization: -23.09 SS G_CDS: 0.17 Total: -22.93 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -34.06 -9.04 -43.10 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663258089.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.452 kcal (2) G-P(sol) polarization free energy of solvation -34.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.099 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds