Wall clock time and date at job start Wed Apr 1 2020 03:38:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46898 * 110.99932 * 2 1 4 4 C 1.52997 * 109.46975 * 293.95124 * 3 2 1 5 5 N 1.46508 * 109.47196 * 179.97438 * 4 3 2 6 6 C 1.34770 * 120.00011 * 179.97438 * 5 4 3 7 7 O 1.21283 * 120.00322 * 354.54255 * 6 5 4 8 8 C 1.50702 * 119.99771 * 174.54508 * 6 5 4 9 9 C 1.50698 * 115.54989 * 302.82435 * 8 6 5 10 10 C 1.38668 * 120.42067 * 328.91053 * 9 8 6 11 11 C 1.38625 * 118.42566 * 180.02562 * 10 9 8 12 12 C 1.38228 * 119.15563 * 0.02562 * 11 10 9 13 13 N 1.31853 * 120.76901 * 359.97438 * 12 11 10 14 14 C 1.31885 * 121.72017 * 359.70866 * 13 12 11 15 15 C 1.53006 * 117.49863 * 157.15786 * 8 6 5 16 16 C 1.52999 * 117.49875 * 88.49771 * 8 6 5 17 17 C 1.46902 * 110.99873 * 123.95087 * 2 1 3 18 18 C 1.50700 * 109.46944 * 66.04593 * 17 2 1 19 19 O 1.21291 * 120.00166 * 0.02562 * 18 17 2 20 20 N 1.34773 * 120.00151 * 179.97438 * 18 17 2 21 21 C 1.37094 * 120.00437 * 179.97438 * 20 18 17 22 22 H 1.07998 * 119.99943 * 0.02562 * 21 20 18 23 23 C 1.38949 * 120.00254 * 180.02562 * 21 20 18 24 24 N 1.31411 * 119.99951 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 120.00203 * 180.02562 * 23 21 20 26 26 H 1.48507 * 109.46720 * 359.97438 * 25 23 21 27 27 H 1.48505 * 109.47304 * 119.99765 * 25 23 21 28 28 H 1.48498 * 109.47375 * 240.00193 * 25 23 21 29 29 H 1.09006 * 109.46980 * 60.00136 * 1 2 3 30 30 H 1.09000 * 109.47013 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47289 * 300.00332 * 1 2 3 32 32 H 1.08996 * 109.47044 * 173.95429 * 3 2 1 33 33 H 1.08994 * 109.47253 * 53.94972 * 3 2 1 34 34 H 1.08998 * 109.47496 * 299.99980 * 4 3 2 35 35 H 1.08998 * 109.47488 * 60.00265 * 4 3 2 36 36 H 0.96998 * 119.99524 * 0.02562 * 5 4 3 37 37 H 1.08005 * 120.78887 * 0.02562 * 10 9 8 38 38 H 1.08000 * 120.42760 * 180.02562 * 11 10 9 39 39 H 1.08007 * 119.61463 * 179.97438 * 12 11 10 40 40 H 1.08004 * 119.61722 * 180.31430 * 14 13 12 41 41 H 1.08999 * 117.49907 * 359.97438 * 15 8 6 42 42 H 1.08997 * 117.49855 * 145.01993 * 15 8 6 43 43 H 1.09000 * 117.49571 * 214.97796 * 16 8 6 44 44 H 1.09000 * 117.50287 * 359.97438 * 16 8 6 45 45 H 1.08995 * 109.47126 * 186.04702 * 17 2 1 46 46 H 1.08993 * 109.47222 * 306.04951 * 17 2 1 47 47 H 0.97001 * 119.99917 * 0.02562 * 20 18 17 48 48 H 0.96998 * 119.99915 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6315 2.0573 -1.3183 5 7 2.1560 3.4253 -1.3181 6 6 1.9554 4.2241 -2.3849 7 8 1.4284 3.7813 -3.3835 8 6 2.3861 5.6674 -2.3370 9 6 1.7950 6.4853 -1.2178 10 6 0.5282 6.1987 -0.7321 11 6 0.0246 6.9779 0.2980 12 6 0.7963 8.0077 0.8026 13 7 1.9973 8.2515 0.3161 14 6 2.5106 7.5271 -0.6591 15 6 2.6394 6.3737 -3.6705 16 6 3.8171 5.9924 -2.7700 17 6 1.9955 -0.7659 1.1376 18 6 1.6369 -2.2204 0.9729 19 8 1.0054 -2.5833 0.0031 20 7 2.0188 -3.1181 1.9028 21 6 1.6922 -4.4411 1.7533 22 1 1.1292 -4.7641 0.8901 23 6 2.0855 -5.3665 2.7123 24 7 2.7701 -4.9734 3.7629 25 14 1.6410 -7.1694 2.5082 26 1 0.8728 -7.3504 1.2502 27 1 2.8827 -7.9820 2.4518 28 1 0.8137 -7.6088 3.6604 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 3.0797 1.3444 0.1082 33 1 1.5611 1.9273 0.8308 34 1 2.0658 1.5015 -2.1492 35 1 0.5472 2.0844 -1.4266 36 1 2.6482 3.7559 -0.5504 37 1 -0.0524 5.3877 -1.1464 38 1 -0.9582 6.7829 0.7011 39 1 0.4111 8.6197 1.6049 40 1 3.4999 7.7536 -1.0286 41 1 2.4950 5.7942 -4.5823 42 1 2.3789 7.4299 -3.7380 43 1 4.3309 6.7980 -2.2455 44 1 4.4473 5.1622 -3.0891 45 1 3.0797 -0.6611 1.1757 46 1 1.5611 -0.3872 2.0628 47 1 2.5241 -2.8279 2.6783 48 1 3.0449 -5.6195 4.4321 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663258089.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:38:22 Heat of formation + Delta-G solvation = -21.280723 kcal Electronic energy + Delta-G solvation = -29175.917360 eV Core-core repulsion = 25038.033346 eV Total energy + Delta-G solvation = -4137.884014 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.179 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.87975 -40.60822 -40.32603 -38.37836 -37.59099 -36.04125 -35.54629 -33.43715 -33.27777 -31.81748 -30.82950 -29.14842 -27.20262 -26.36646 -25.08493 -24.67359 -23.44818 -23.15984 -22.35752 -21.02382 -20.71447 -19.85875 -18.78565 -18.00484 -17.72420 -17.43142 -17.12212 -16.84978 -16.57797 -16.39342 -16.12676 -15.96387 -15.59341 -15.47386 -15.11786 -15.05062 -14.86812 -14.66827 -14.31076 -14.01817 -13.79648 -13.79288 -13.46632 -13.05709 -13.01627 -12.97819 -12.61344 -12.57294 -12.42207 -12.39953 -12.18384 -12.10537 -12.07812 -11.75524 -11.46687 -11.13914 -10.73770 -10.38896 -10.29990 -10.19587 -9.99411 -9.83226 -9.26564 -8.46534 -5.94632 0.05994 0.25726 1.36196 1.38278 1.41664 1.55458 1.86997 2.06158 2.29588 2.56380 2.84663 2.96460 3.20526 3.30455 3.40723 3.58817 3.60967 3.71588 3.81601 3.87563 3.92835 4.01545 4.03103 4.23785 4.28802 4.34206 4.42577 4.46766 4.51774 4.60269 4.61740 4.63193 4.71214 4.81938 4.87487 4.91147 4.93445 5.12145 5.14363 5.18833 5.24871 5.28712 5.41957 5.69736 5.83380 6.03653 6.14275 6.41601 6.61534 6.97640 7.10504 7.14092 7.57520 8.13825 8.71029 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.019589 B = 0.001754 C = 0.001690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.054549 B =15961.217655 C =16565.314503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.538 5.538 3 C 0.053 3.947 4 C 0.130 3.870 5 N -0.707 5.707 6 C 0.552 3.448 7 O -0.577 6.577 8 C -0.133 4.133 9 C -0.093 4.093 10 C -0.079 4.079 11 C -0.163 4.163 12 C 0.089 3.911 13 N -0.502 5.502 14 C 0.101 3.899 15 C -0.136 4.136 16 C -0.130 4.130 17 C 0.060 3.940 18 C 0.440 3.560 19 O -0.616 6.616 20 N -0.574 5.574 21 C -0.330 4.330 22 H 0.077 0.923 23 C -0.014 4.014 24 N -0.920 5.920 25 Si 0.991 3.009 26 H -0.275 1.275 27 H -0.271 1.271 28 H -0.271 1.271 29 H 0.073 0.927 30 H 0.056 0.944 31 H 0.035 0.965 32 H 0.097 0.903 33 H 0.059 0.941 34 H 0.057 0.943 35 H 0.060 0.940 36 H 0.414 0.586 37 H 0.121 0.879 38 H 0.156 0.844 39 H 0.179 0.821 40 H 0.178 0.822 41 H 0.096 0.904 42 H 0.120 0.880 43 H 0.137 0.863 44 H 0.108 0.892 45 H 0.114 0.886 46 H 0.073 0.927 47 H 0.397 0.603 48 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.749 29.703 -4.294 30.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.263 5.263 3 C -0.074 4.074 4 C 0.006 3.994 5 N -0.358 5.358 6 C 0.339 3.661 7 O -0.456 6.456 8 C -0.137 4.137 9 C -0.096 4.096 10 C -0.105 4.105 11 C -0.183 4.183 12 C -0.067 4.067 13 N -0.210 5.210 14 C -0.056 4.056 15 C -0.173 4.173 16 C -0.167 4.167 17 C -0.071 4.071 18 C 0.227 3.773 19 O -0.502 6.502 20 N -0.212 5.212 21 C -0.460 4.460 22 H 0.095 0.905 23 C -0.213 4.213 24 N -0.561 5.561 25 Si 0.815 3.185 26 H -0.199 1.199 27 H -0.196 1.196 28 H -0.196 1.196 29 H 0.092 0.908 30 H 0.075 0.925 31 H 0.054 0.946 32 H 0.115 0.885 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.251 0.749 37 H 0.139 0.861 38 H 0.174 0.826 39 H 0.196 0.804 40 H 0.195 0.805 41 H 0.114 0.886 42 H 0.139 0.861 43 H 0.155 0.845 44 H 0.126 0.874 45 H 0.132 0.868 46 H 0.090 0.910 47 H 0.230 0.770 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.650 29.483 -5.534 30.043 hybrid contribution -0.831 -1.473 0.964 1.946 sum 0.819 28.010 -4.570 28.392 Atomic orbital electron populations 1.22465 0.86835 1.02430 1.00571 1.61335 1.08933 1.13001 1.43015 1.22227 1.01805 0.87441 0.95972 1.21127 0.98727 0.81337 0.98197 1.45699 1.57114 1.13191 1.19833 1.19710 0.77477 0.86810 0.82121 1.90725 1.44942 1.76629 1.33279 1.19947 1.04249 0.90930 0.98603 1.19715 0.95251 0.97833 0.96772 1.21531 0.94630 0.98734 0.95591 1.22386 1.02513 0.96310 0.97060 1.23242 0.89612 0.95443 0.98423 1.67800 1.13951 1.28060 1.11199 1.22957 1.00304 0.90565 0.91756 1.23173 1.00861 1.01489 0.91794 1.23380 0.87928 1.04466 1.00934 1.21735 1.02329 0.89955 0.93044 1.20811 0.83713 0.88877 0.83869 1.90477 1.45198 1.81478 1.33020 1.41928 1.50066 1.07004 1.22205 1.19666 1.34237 0.84110 1.07971 0.90452 1.26009 0.96355 1.04222 0.94743 1.69670 1.38182 1.37048 1.11211 0.84895 0.78239 0.77133 0.78213 1.19942 1.19642 1.19614 0.90837 0.92512 0.94645 0.88454 0.92264 0.92426 0.92177 0.74907 0.86064 0.82589 0.80399 0.80500 0.88579 0.86149 0.84473 0.87401 0.86770 0.90961 0.76957 0.91337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.78 8.96 127.69 1.14 1.92 16 2 N -0.54 -16.55 4.50 -927.07 -4.17 -20.72 16 3 C 0.05 1.11 5.07 86.30 0.44 1.55 16 4 C 0.13 2.89 5.60 86.38 0.48 3.38 16 5 N -0.71 -12.29 5.53 -463.05 -2.56 -14.85 16 6 C 0.55 11.57 6.08 87.66 0.53 12.10 16 7 O -0.58 -17.47 16.52 -3.04 -0.05 -17.52 16 8 C -0.13 -1.90 2.38 -53.67 -0.13 -2.02 16 9 C -0.09 -1.25 5.46 -19.78 -0.11 -1.36 16 10 C -0.08 -1.14 9.44 22.46 0.21 -0.92 16 11 C -0.16 -1.88 10.11 22.36 0.23 -1.65 16 12 C 0.09 1.07 11.18 84.69 0.95 2.01 16 13 N -0.50 -7.52 10.36 -195.83 -2.03 -9.55 16 14 C 0.10 1.23 10.54 84.67 0.89 2.12 16 15 C -0.14 -1.70 9.73 30.62 0.30 -1.40 16 16 C -0.13 -1.14 9.59 30.62 0.29 -0.84 16 17 C 0.06 1.98 5.45 85.56 0.47 2.44 16 18 C 0.44 20.62 7.47 87.66 0.66 21.27 16 19 O -0.62 -33.89 13.91 -3.06 -0.04 -33.93 16 20 N -0.57 -29.10 5.29 -306.99 -1.62 -30.72 16 21 C -0.33 -18.68 9.68 84.04 0.81 -17.87 16 22 H 0.08 4.70 7.16 -2.91 -0.02 4.68 16 23 C -0.01 -0.73 5.50 84.93 0.47 -0.26 16 24 N -0.92 -49.22 13.05 21.66 0.28 -48.94 16 25 Si 0.99 42.96 29.55 68.60 2.03 44.99 16 26 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 27 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 28 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 29 H 0.07 2.09 6.47 -2.38 -0.02 2.08 16 30 H 0.06 2.28 5.83 -2.39 -0.01 2.26 16 31 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.10 1.71 7.93 -2.39 -0.02 1.70 16 33 H 0.06 1.01 8.12 -2.39 -0.02 0.99 16 34 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.06 1.47 6.55 -2.39 -0.02 1.45 16 36 H 0.41 4.99 8.48 -92.71 -0.79 4.20 16 37 H 0.12 1.98 7.47 -2.91 -0.02 1.95 16 38 H 0.16 1.11 8.06 -2.91 -0.02 1.09 16 39 H 0.18 1.19 8.06 -2.91 -0.02 1.16 16 40 H 0.18 1.23 5.96 -2.91 -0.02 1.21 16 41 H 0.10 1.55 7.86 -2.39 -0.02 1.53 16 42 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 43 H 0.14 0.45 6.12 -2.39 -0.01 0.44 16 44 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 45 H 0.11 3.19 7.93 -2.39 -0.02 3.17 16 46 H 0.07 2.06 8.12 -2.39 -0.02 2.04 16 47 H 0.40 18.93 7.90 -92.71 -0.73 18.19 16 48 H 0.28 13.85 8.31 -92.71 -0.77 13.08 16 Total: -1.00 -76.42 401.17 -1.04 -77.46 By element: Atomic # 1 Polarization: 33.83 SS G_CDS: -0.51 Total: 33.32 kcal Atomic # 6 Polarization: 12.84 SS G_CDS: 7.63 Total: 20.47 kcal Atomic # 7 Polarization: -114.69 SS G_CDS: -10.10 Total: -124.79 kcal Atomic # 8 Polarization: -51.36 SS G_CDS: -0.09 Total: -51.45 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Total: -76.42 -1.04 -77.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663258089.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.179 kcal (2) G-P(sol) polarization free energy of solvation -76.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds