Wall clock time and date at job start Wed Apr 1 2020 04:51:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17407 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47242 * 3.67686 * 3 2 1 5 5 C 1.36939 * 119.99787 * 265.83887 * 4 3 2 6 6 H 1.08000 * 119.99680 * 187.90063 * 5 4 3 7 7 C 1.38815 * 120.00191 * 7.89347 * 5 4 3 8 8 N 1.31617 * 119.99689 * 32.49760 * 7 5 4 9 9 Si 1.86797 * 120.00112 * 212.49716 * 7 5 4 10 10 H 1.48504 * 109.46763 * 94.99988 * 9 7 5 11 11 H 1.48493 * 109.47010 * 214.99758 * 9 7 5 12 12 H 1.48497 * 109.47476 * 335.00017 * 9 7 5 13 13 C 1.46493 * 120.00399 * 85.83299 * 4 3 2 14 14 C 1.50699 * 109.47591 * 270.00307 * 13 4 3 15 15 O 1.21286 * 119.99687 * 5.69437 * 14 13 4 16 16 N 1.34779 * 120.00712 * 185.96949 * 14 13 4 17 17 C 1.46493 * 120.00532 * 185.55549 * 16 14 13 18 18 C 1.50701 * 109.47074 * 84.81429 * 17 16 14 19 19 C 1.38259 * 119.99356 * 275.69849 * 18 17 16 20 20 C 1.38220 * 120.05440 * 179.72770 * 19 18 17 21 21 C 1.38223 * 120.02538 * 0.54641 * 20 19 18 22 22 C 1.38445 * 119.97175 * 359.72471 * 21 20 19 23 23 F 1.35100 * 120.02472 * 180.02562 * 22 21 20 24 24 C 1.38185 * 119.98023 * 95.97177 * 18 17 16 25 25 C 1.46504 * 119.99642 * 5.55341 * 16 14 13 26 26 C 1.53004 * 109.47132 * 69.57829 * 25 16 14 27 27 C 1.52997 * 109.46939 * 189.58081 * 25 16 14 28 28 C 1.53003 * 109.46842 * 309.58316 * 25 16 14 29 29 H 4.40646 * 5.51393 * 179.97438 * 4 1 2 30 30 H 1.08994 * 109.47162 * 243.67281 * 3 2 1 31 31 H 1.09000 * 109.46778 * 123.67066 * 3 2 1 32 32 H 0.96998 * 120.00201 * 180.02562 * 8 7 5 33 33 H 1.09004 * 109.47619 * 150.00307 * 13 4 3 34 34 H 1.09007 * 109.47332 * 30.00198 * 13 4 3 35 35 H 1.09001 * 109.47483 * 204.81962 * 17 16 14 36 36 H 1.09000 * 109.46949 * 324.82233 * 17 16 14 37 37 H 1.08004 * 119.96948 * 359.97438 * 19 18 17 38 38 H 1.08001 * 119.99058 * 180.27306 * 20 19 18 39 39 H 1.07994 * 120.01347 * 179.75104 * 21 20 19 40 40 H 1.07993 * 120.01662 * 359.97438 * 24 18 17 41 41 H 1.08998 * 109.46595 * 67.41021 * 26 25 16 42 42 H 1.08994 * 109.47074 * 187.40627 * 26 25 16 43 43 H 1.08992 * 109.47289 * 307.41534 * 26 25 16 44 44 H 1.08997 * 109.46764 * 64.97179 * 27 25 16 45 45 H 1.09004 * 109.46449 * 184.96121 * 27 25 16 46 46 H 1.08996 * 109.47361 * 304.96225 * 27 25 16 47 47 H 1.09004 * 109.47073 * 83.48682 * 28 25 16 48 48 H 1.09006 * 109.46637 * 203.48104 * 28 25 16 49 49 H 1.08991 * 109.47337 * 323.48495 * 28 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1350 -1.3775 -0.0886 5 6 3.4447 -2.0687 1.0523 6 1 3.9238 -3.0343 0.9853 7 6 3.1430 -1.5283 2.2948 8 7 2.0794 -0.7668 2.4405 9 14 4.2464 -1.8818 3.7600 10 1 5.2312 -0.7810 3.9149 11 1 3.4196 -1.9829 4.9893 12 1 4.9657 -3.1622 3.5405 13 6 3.2926 -2.0161 -1.3975 14 6 2.0109 -2.7137 -1.7737 15 8 1.0278 -2.5952 -1.0733 16 7 1.9584 -3.4738 -2.8855 17 6 0.6840 -4.0526 -3.3178 18 6 -0.0723 -3.0429 -4.1421 19 6 -0.8536 -2.0876 -3.5188 20 6 -1.5433 -1.1574 -4.2734 21 6 -1.4618 -1.1883 -5.6529 22 6 -0.6842 -2.1479 -6.2784 23 9 -0.6033 -2.1787 -7.6266 24 6 0.0108 -3.0758 -5.5211 25 6 3.1760 -3.7212 -3.6617 26 6 4.1130 -4.6310 -2.8646 27 6 2.8093 -4.3991 -4.9834 28 6 3.8774 -2.3918 -3.9477 29 1 -1.0498 -0.0004 0.0002 30 1 3.0092 0.4566 0.9210 31 1 3.0091 0.5706 -0.8553 32 1 1.8687 -0.3888 3.3086 33 1 4.1025 -2.7443 -1.3515 34 1 3.5271 -1.2587 -2.1456 35 1 0.8739 -4.9425 -3.9178 36 1 0.0927 -4.3235 -2.4431 37 1 -0.9218 -2.0657 -2.4411 38 1 -2.1498 -0.4088 -3.7852 39 1 -2.0040 -0.4639 -6.2424 40 1 0.6179 -3.8245 -6.0080 41 1 3.6673 -5.6216 -2.7741 42 1 5.0698 -4.7089 -3.3808 43 1 4.2692 -4.2108 -1.8712 44 1 2.2143 -3.7158 -5.5893 45 1 3.7200 -4.6627 -5.5214 46 1 2.2326 -5.3017 -4.7811 47 1 4.4928 -2.1143 -3.0919 48 1 4.5085 -2.4965 -4.8303 49 1 3.1307 -1.6178 -4.1246 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491663133.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:23 Heat of formation + Delta-G solvation = 63.686615 kcal Electronic energy + Delta-G solvation = -32283.992494 eV Core-core repulsion = 28129.872979 eV Total energy + Delta-G solvation = -4154.119515 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.180 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -48.91262 -40.29537 -38.64378 -36.76086 -35.59420 -33.21719 -31.46478 -31.27910 -30.97670 -30.20235 -28.74757 -27.31353 -26.38279 -25.86682 -25.52802 -22.66133 -22.23795 -21.54657 -20.58384 -18.23018 -17.46709 -17.35860 -16.55531 -16.49959 -16.12801 -15.76377 -15.74716 -15.54569 -14.98152 -14.66606 -14.36329 -14.02937 -13.78088 -13.59499 -13.42414 -13.40095 -13.13470 -12.79297 -12.63234 -12.45133 -12.27659 -12.14197 -11.95230 -11.70924 -11.53889 -11.43854 -11.35805 -11.20095 -11.06316 -10.89328 -10.78030 -10.48707 -10.43175 -10.23981 -9.87344 -9.22519 -8.94470 -8.69207 -8.64736 -8.52862 -8.24012 -8.16575 -7.06421 -5.80726 -3.07518 1.16161 1.23012 3.29641 3.40645 3.48560 3.49869 3.53355 3.80718 4.22238 4.32782 4.55655 4.65287 4.67527 4.72126 4.77839 4.87898 5.01528 5.13125 5.19871 5.29815 5.32984 5.39289 5.45868 5.54808 5.60843 5.66573 5.69555 5.80431 5.81652 5.84576 5.93466 5.95926 6.02563 6.05115 6.09463 6.13422 6.14982 6.18759 6.33467 6.44298 6.51059 6.61775 6.69401 6.94803 7.03355 7.26057 7.52904 7.77667 7.99078 8.23553 9.05926 9.14429 9.42159 9.78004 10.21045 11.23655 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.014084 B = 0.003875 C = 0.003290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1987.639553 B = 7224.742482 C = 8508.079475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.285 4.285 2 C -0.097 4.097 3 C 0.264 3.736 4 N -0.560 5.560 5 C -0.269 4.269 6 H 0.077 0.923 7 C 0.011 3.989 8 N -0.866 5.866 9 Si 0.888 3.112 10 H -0.287 1.287 11 H -0.295 1.295 12 H -0.280 1.280 13 C 0.117 3.883 14 C 0.475 3.525 15 O -0.492 6.492 16 N -0.617 5.617 17 C 0.146 3.854 18 C -0.066 4.066 19 C -0.101 4.101 20 C -0.092 4.092 21 C -0.157 4.157 22 C 0.086 3.914 23 F -0.146 7.146 24 C -0.152 4.152 25 C 0.168 3.832 26 C -0.168 4.168 27 C -0.164 4.164 28 C -0.176 4.176 29 H 0.183 0.817 30 H 0.098 0.902 31 H 0.035 0.965 32 H 0.253 0.747 33 H 0.083 0.917 34 H 0.079 0.921 35 H 0.084 0.916 36 H 0.088 0.912 37 H 0.141 0.859 38 H 0.130 0.870 39 H 0.130 0.870 40 H 0.136 0.864 41 H 0.056 0.944 42 H 0.064 0.936 43 H 0.073 0.927 44 H 0.069 0.931 45 H 0.067 0.933 46 H 0.063 0.937 47 H 0.081 0.919 48 H 0.061 0.939 49 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.175 -4.144 -17.852 18.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.304 4.304 2 C -0.100 4.100 3 C 0.139 3.861 4 N -0.277 5.277 5 C -0.398 4.398 6 H 0.095 0.905 7 C -0.189 4.189 8 N -0.507 5.507 9 Si 0.717 3.283 10 H -0.214 1.214 11 H -0.221 1.221 12 H -0.205 1.205 13 C -0.014 4.014 14 C 0.261 3.739 15 O -0.362 6.362 16 N -0.356 5.356 17 C 0.023 3.977 18 C -0.068 4.068 19 C -0.119 4.119 20 C -0.110 4.110 21 C -0.177 4.177 22 C 0.067 3.933 23 F -0.125 7.125 24 C -0.171 4.171 25 C 0.083 3.917 26 C -0.226 4.226 27 C -0.221 4.221 28 C -0.233 4.233 29 H 0.201 0.799 30 H 0.116 0.884 31 H 0.053 0.947 32 H 0.063 0.937 33 H 0.101 0.899 34 H 0.097 0.903 35 H 0.102 0.898 36 H 0.106 0.894 37 H 0.159 0.841 38 H 0.148 0.852 39 H 0.148 0.852 40 H 0.153 0.847 41 H 0.075 0.925 42 H 0.083 0.917 43 H 0.092 0.908 44 H 0.087 0.913 45 H 0.086 0.914 46 H 0.082 0.918 47 H 0.099 0.901 48 H 0.080 0.920 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.718 -3.977 -17.265 17.732 hybrid contribution -0.107 -0.380 0.541 0.670 sum -0.824 -4.357 -16.724 17.302 Atomic orbital electron populations 1.23910 0.95046 1.04381 1.07095 1.23973 0.95007 0.96428 0.94590 1.17988 0.83293 0.85360 0.99493 1.44498 1.72673 1.09868 1.00639 1.19151 1.33236 1.03965 0.83405 0.90501 1.24747 0.96538 1.00406 0.97241 1.70374 1.20906 1.36236 1.23224 0.86484 0.81155 0.77958 0.82658 1.21397 1.22142 1.20484 1.21878 0.93536 0.96604 0.89393 1.23379 0.93630 0.78300 0.78597 1.90719 1.37200 1.59332 1.48984 1.48775 1.06282 1.53312 1.27201 1.20296 0.85875 0.93365 0.98157 1.20230 0.96343 0.97561 0.92635 1.21491 0.95104 0.93642 1.01695 1.21071 0.98805 0.98522 0.92596 1.21115 1.01295 0.99533 0.95711 1.17656 1.00588 0.98425 0.76629 1.91471 1.95198 1.96196 1.29601 1.21150 1.01669 1.00271 0.93999 1.20275 0.85256 0.95120 0.91029 1.22439 0.98899 0.99722 1.01532 1.22445 1.02426 1.00790 0.96414 1.22760 1.01085 0.96734 1.02750 0.79940 0.88425 0.94710 0.93659 0.89943 0.90310 0.89822 0.89381 0.84084 0.85170 0.85245 0.84660 0.92510 0.91726 0.90826 0.91259 0.91408 0.91812 0.90064 0.91982 0.91924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.29 -6.86 18.66 29.55 0.55 -6.31 16 2 C -0.10 -2.44 10.26 -37.12 -0.38 -2.82 16 3 C 0.26 6.28 5.47 -6.83 -0.04 6.24 16 4 N -0.56 -13.35 2.12 -177.96 -0.38 -13.73 16 5 C -0.27 -7.14 9.63 -15.06 -0.15 -7.29 16 6 H 0.08 2.02 7.99 -52.49 -0.42 1.60 16 7 C 0.01 0.31 4.67 -17.43 -0.08 0.23 16 8 N -0.87 -24.88 9.88 55.49 0.55 -24.34 16 9 Si 0.89 21.21 29.66 -169.99 -5.04 16.17 16 10 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 12 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 13 C 0.12 2.23 3.83 -5.20 -0.02 2.21 16 14 C 0.48 9.19 7.16 -10.98 -0.08 9.11 16 15 O -0.49 -11.68 12.45 5.55 0.07 -11.61 16 16 N -0.62 -9.10 2.39 -160.18 -0.38 -9.48 16 17 C 0.15 1.99 4.98 -5.20 -0.03 1.96 16 18 C -0.07 -0.89 5.41 -104.63 -0.57 -1.46 16 19 C -0.10 -1.50 9.53 -39.58 -0.38 -1.87 16 20 C -0.09 -1.18 10.04 -39.59 -0.40 -1.58 16 21 C -0.16 -1.89 10.03 -39.51 -0.40 -2.29 16 22 C 0.09 1.08 7.30 -39.42 -0.29 0.79 16 23 F -0.15 -1.84 17.27 2.25 0.04 -1.80 16 24 C -0.15 -1.83 8.42 -39.51 -0.33 -2.16 16 25 C 0.17 1.94 1.02 -131.81 -0.13 1.81 16 26 C -0.17 -1.89 8.39 37.16 0.31 -1.58 16 27 C -0.16 -1.48 6.96 37.16 0.26 -1.22 16 28 C -0.18 -1.96 7.09 37.16 0.26 -1.70 16 29 H 0.18 3.82 7.80 -54.10 -0.42 3.40 16 30 H 0.10 2.52 6.21 -51.93 -0.32 2.20 16 31 H 0.03 0.72 7.95 -51.93 -0.41 0.30 16 32 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 33 H 0.08 1.45 4.48 -51.93 -0.23 1.22 16 34 H 0.08 1.33 5.35 -51.93 -0.28 1.06 16 35 H 0.08 0.90 5.45 -51.93 -0.28 0.62 16 36 H 0.09 1.38 7.49 -51.93 -0.39 0.99 16 37 H 0.14 2.48 6.93 -52.48 -0.36 2.11 16 38 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 39 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 40 H 0.14 1.37 5.85 -52.49 -0.31 1.06 16 41 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 42 H 0.06 0.59 8.13 -51.93 -0.42 0.17 16 43 H 0.07 1.00 5.17 -51.93 -0.27 0.73 16 44 H 0.07 0.65 4.80 -51.93 -0.25 0.40 16 45 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 46 H 0.06 0.54 6.21 -51.93 -0.32 0.22 16 47 H 0.08 0.95 4.82 -51.93 -0.25 0.70 16 48 H 0.06 0.56 7.93 -51.93 -0.41 0.15 16 49 H 0.06 0.79 7.82 -51.93 -0.41 0.39 16 LS Contribution 385.05 15.07 5.80 5.80 Total: -1.00 -32.22 385.05 -7.81 -40.02 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: -6.59 Total: 6.89 kcal Atomic # 6 Polarization: -6.06 SS G_CDS: -1.87 Total: -7.93 kcal Atomic # 7 Polarization: -47.34 SS G_CDS: -0.21 Total: -47.55 kcal Atomic # 8 Polarization: -11.68 SS G_CDS: 0.07 Total: -11.61 kcal Atomic # 9 Polarization: -1.84 SS G_CDS: 0.04 Total: -1.80 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.04 Total: 16.17 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.22 -7.81 -40.02 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491663133.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.710 kcal (2) G-P(sol) polarization free energy of solvation -32.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.024 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds