Wall clock time and date at job start Wed Apr 1 2020 04:48:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.46763 * 2 1 4 4 C 1.52996 * 109.47340 * 239.99664 * 2 1 3 5 5 N 1.46498 * 109.47089 * 119.99420 * 2 1 3 6 6 N 1.40054 * 125.87606 * 359.97438 * 5 2 1 7 7 C 1.30247 * 109.69479 * 180.02562 * 6 5 2 8 8 C 1.41195 * 108.47338 * 359.97438 * 7 6 5 9 9 C 1.36325 * 125.87435 * 180.02562 * 5 2 1 10 10 N 1.33188 * 134.52575 * 359.95122 * 9 5 2 11 11 C 1.32217 * 120.62869 * 180.02562 * 10 9 5 12 12 N 1.38385 * 118.78364 * 179.97438 * 11 10 9 13 13 C 1.47842 * 110.99815 * 300.84277 * 12 11 10 14 14 C 1.54908 * 104.79796 * 213.63587 * 13 12 11 15 15 C 1.55140 * 101.65188 * 37.07070 * 14 13 12 16 16 O 1.42898 * 110.70534 * 82.72899 * 15 14 13 17 17 C 1.50698 * 110.70591 * 205.96327 * 15 14 13 18 18 H 1.07993 * 120.00065 * 355.05712 * 17 15 14 19 19 C 1.37883 * 119.99975 * 175.04982 * 17 15 14 20 20 N 1.31514 * 119.99809 * 0.02562 * 19 17 15 21 21 Si 1.86794 * 120.00022 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47073 * 90.00462 * 21 19 17 23 23 H 1.48496 * 109.47391 * 210.00167 * 21 19 17 24 24 H 1.48497 * 109.47458 * 330.00491 * 21 19 17 25 25 C 1.47442 * 110.99961 * 180.02562 * 12 11 10 26 26 N 1.32796 * 122.43780 * 0.02562 * 11 10 9 27 27 C 1.32745 * 121.12409 * 0.23409 * 26 11 10 28 28 N 1.38092 * 120.75114 * 179.68840 * 27 26 11 29 29 H 1.09001 * 109.47491 * 299.99890 * 1 2 3 30 30 H 1.08994 * 109.47522 * 60.00087 * 1 2 3 31 31 H 1.09000 * 109.46888 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47400 * 179.97438 * 3 2 1 33 33 H 1.09003 * 109.47298 * 299.99718 * 3 2 1 34 34 H 1.09005 * 109.47676 * 60.00153 * 3 2 1 35 35 H 1.08997 * 109.47245 * 300.00210 * 4 2 1 36 36 H 1.09004 * 109.46621 * 59.99700 * 4 2 1 37 37 H 1.09002 * 109.47021 * 179.97438 * 4 2 1 38 38 H 1.07999 * 125.76848 * 179.97438 * 7 6 5 39 39 H 1.09000 * 110.37832 * 332.46414 * 13 12 11 40 40 H 1.08999 * 110.37334 * 94.80724 * 13 12 11 41 41 H 1.09000 * 110.98774 * 278.98207 * 14 13 12 42 42 H 1.08997 * 110.99596 * 155.16205 * 14 13 12 43 43 H 0.96702 * 114.00244 * 184.94726 * 16 15 14 44 44 H 0.96999 * 120.00038 * 180.02562 * 20 19 17 45 45 H 1.09004 * 109.88572 * 242.66015 * 25 12 11 46 46 H 1.09001 * 109.89433 * 3.84311 * 25 12 11 47 47 H 0.96994 * 120.00606 * 179.85631 * 28 27 26 48 48 H 0.97006 * 120.00033 * 359.86207 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 7 2.0183 -0.6905 1.1962 6 7 1.2219 -1.2660 2.1943 7 6 1.9811 -1.7947 3.1111 8 6 3.3301 -1.5870 2.7495 9 6 3.3261 -0.8825 1.5299 10 7 4.4902 -0.5592 0.9693 11 6 5.6317 -0.8925 1.5471 12 7 6.8189 -0.5378 0.9310 13 6 6.9096 -1.1255 -0.4226 14 6 8.4162 -1.4238 -0.6243 15 6 8.8376 -1.8834 0.7963 16 8 8.5253 -3.2637 0.9941 17 6 10.3053 -1.6296 1.0249 18 1 10.9209 -1.2575 0.2194 19 6 10.8623 -1.8722 2.2627 20 7 10.1127 -2.3257 3.2436 21 14 12.6815 -1.5569 2.5463 22 1 12.8753 -0.1592 3.0089 23 1 13.1915 -2.4950 3.5783 24 1 13.4239 -1.7658 1.2773 25 6 7.9795 -0.9927 1.7185 26 7 5.6812 -1.5561 2.6964 27 6 4.5713 -1.9243 3.3245 28 7 4.6318 -2.6196 4.5160 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 3.1299 1.4426 0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.6767 -1.7489 -1.2491 36 1 1.6766 -0.2075 -2.1391 37 1 3.1300 -0.7209 -1.2493 38 1 1.6370 -2.3058 3.9981 39 1 6.3299 -2.0470 -0.4759 40 1 6.5605 -0.4129 -1.1699 41 1 8.9562 -0.5243 -0.9199 42 1 8.5623 -2.2219 -1.3522 43 1 8.6989 -3.5817 1.8907 44 1 10.5045 -2.4960 4.1144 45 1 8.5621 -0.1334 2.0504 46 1 7.6406 -1.5686 2.5796 47 1 3.8139 -2.8816 4.9668 48 1 5.4923 -2.8461 4.9023 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596288708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:48:51 Heat of formation + Delta-G solvation = 90.193965 kcal Electronic energy + Delta-G solvation = -32000.997684 eV Core-core repulsion = 27900.240326 eV Total energy + Delta-G solvation = -4100.757358 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.186 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.76091 -39.57872 -37.90382 -36.55809 -35.49670 -34.16764 -32.14214 -31.90576 -30.26079 -30.15591 -28.46150 -27.63149 -27.43824 -27.40880 -24.82343 -23.32969 -22.99736 -21.99015 -20.57392 -19.77819 -19.09997 -18.07278 -17.44881 -17.03064 -16.46142 -16.08495 -15.72331 -15.31398 -14.96978 -14.62371 -14.58913 -14.34735 -14.19230 -13.89162 -13.53884 -13.11715 -12.86037 -12.66285 -12.44106 -12.36680 -12.32959 -12.15356 -11.81293 -11.59424 -11.56409 -11.42008 -11.27508 -11.19313 -11.02875 -10.92987 -10.72115 -10.58286 -10.46097 -10.17331 -9.95986 -9.65260 -9.24713 -8.90877 -8.67312 -8.58076 -8.24877 -8.06077 -7.48229 -6.19160 -4.26726 1.16588 1.83746 2.20104 2.65207 3.24396 3.31597 3.35376 3.44998 3.91198 4.20873 4.28825 4.32725 4.71478 4.73907 4.80170 4.87794 4.94834 5.08879 5.23302 5.28898 5.43661 5.44987 5.54290 5.60825 5.63935 5.69348 5.75629 5.83111 5.90769 5.94180 6.05724 6.15178 6.17905 6.24392 6.35905 6.52581 6.69936 6.83908 6.84850 7.00123 7.11063 7.19507 7.34088 7.50188 7.58204 7.68367 7.78056 7.85296 8.04283 8.14959 8.74800 8.86354 9.39752 9.48179 10.87607 Molecular weight = 346.19amu Principal moments of inertia in cm(-1) A = 0.017957 B = 0.003280 C = 0.002934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.904401 B = 8535.649526 C = 9541.002220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.194 3.806 3 C -0.162 4.162 4 C -0.162 4.162 5 N -0.377 5.377 6 N -0.269 5.269 7 C 0.105 3.895 8 C -0.369 4.369 9 C 0.398 3.602 10 N -0.591 5.591 11 C 0.587 3.413 12 N -0.459 5.459 13 C 0.072 3.928 14 C -0.117 4.117 15 C 0.240 3.760 16 O -0.587 6.587 17 C -0.533 4.533 18 H 0.063 0.937 19 C 0.071 3.929 20 N -0.891 5.891 21 Si 0.899 3.101 22 H -0.279 1.279 23 H -0.286 1.286 24 H -0.274 1.274 25 C 0.029 3.971 26 N -0.612 5.612 27 C 0.532 3.468 28 N -0.824 5.824 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.080 0.920 33 H 0.074 0.926 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.074 0.926 37 H 0.079 0.921 38 H 0.186 0.814 39 H 0.047 0.953 40 H 0.076 0.924 41 H 0.079 0.921 42 H 0.070 0.930 43 H 0.380 0.620 44 H 0.266 0.734 45 H 0.078 0.922 46 H 0.112 0.888 47 H 0.408 0.592 48 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.427 1.805 -0.756 17.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.112 3.888 3 C -0.220 4.220 4 C -0.220 4.220 5 N -0.168 5.168 6 N -0.082 5.082 7 C -0.091 4.091 8 C -0.387 4.387 9 C 0.149 3.851 10 N -0.323 5.323 11 C 0.228 3.772 12 N -0.178 5.178 13 C -0.054 4.054 14 C -0.155 4.155 15 C 0.200 3.800 16 O -0.396 6.396 17 C -0.571 4.571 18 H 0.081 0.919 19 C -0.132 4.132 20 N -0.530 5.530 21 Si 0.727 3.273 22 H -0.205 1.205 23 H -0.212 1.212 24 H -0.198 1.198 25 C -0.096 4.096 26 N -0.345 5.345 27 C 0.275 3.725 28 N -0.367 5.367 29 H 0.084 0.916 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.099 0.901 33 H 0.093 0.907 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.093 0.907 37 H 0.098 0.902 38 H 0.203 0.797 39 H 0.066 0.934 40 H 0.095 0.905 41 H 0.098 0.902 42 H 0.089 0.911 43 H 0.230 0.770 44 H 0.076 0.924 45 H 0.096 0.904 46 H 0.130 0.870 47 H 0.238 0.762 48 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -18.016 2.953 -2.308 18.402 hybrid contribution 1.230 -1.004 2.092 2.626 sum -16.787 1.949 -0.216 16.901 Atomic orbital electron populations 1.21885 0.92084 1.03209 1.02551 1.20599 0.95201 0.91712 0.81280 1.22251 1.03772 0.93642 1.02352 1.22249 1.03697 1.00346 0.95717 1.48530 0.99849 1.48751 1.19704 1.76806 1.18389 1.14431 0.98587 1.23416 0.89589 0.97942 0.98202 1.19446 0.94452 1.20843 1.03954 1.18584 0.86880 0.90502 0.89122 1.67120 0.94757 1.32606 1.37858 1.20680 0.89336 0.81930 0.85246 1.60128 1.00093 1.52534 1.05040 1.22851 0.98260 0.97106 0.87136 1.22753 0.92861 1.00851 0.99063 1.19661 0.92470 0.79397 0.88479 1.86106 1.89203 1.27366 1.36885 1.21512 0.93863 1.44760 0.96988 0.91853 1.25030 0.98420 0.93961 0.95784 1.69730 1.35707 1.44889 1.02717 0.86474 0.84742 0.78070 0.77996 1.20536 1.21174 1.19837 1.23951 0.86915 1.00545 0.98229 1.67996 1.28037 1.23567 1.14854 1.17837 0.86734 0.83228 0.84658 1.42100 1.12345 1.60313 1.21910 0.91589 0.91118 0.91572 0.90140 0.90722 0.92407 0.92357 0.90698 0.90223 0.79742 0.93410 0.90524 0.90237 0.91115 0.76996 0.92373 0.90392 0.87021 0.76186 0.75609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 7.97 37.16 0.30 -1.06 16 2 C 0.19 2.36 1.21 -131.83 -0.16 2.20 16 3 C -0.16 -1.89 8.52 37.16 0.32 -1.57 16 4 C -0.16 -1.88 8.52 37.16 0.32 -1.56 16 5 N -0.38 -5.60 3.49 -47.79 -0.17 -5.77 16 6 N -0.27 -3.74 11.51 30.81 0.35 -3.39 16 7 C 0.11 1.32 11.86 -17.10 -0.20 1.12 16 8 C -0.37 -5.79 6.14 -106.79 -0.66 -6.45 16 9 C 0.40 6.90 7.11 -156.24 -1.11 5.79 16 10 N -0.59 -11.27 9.02 -13.32 -0.12 -11.39 16 11 C 0.59 12.22 6.92 -322.80 -2.23 9.98 16 12 N -0.46 -9.89 5.25 -172.21 -0.90 -10.79 16 13 C 0.07 1.44 6.39 -2.30 -0.01 1.42 16 14 C -0.12 -2.48 6.22 -24.59 -0.15 -2.64 16 15 C 0.24 5.90 0.85 -89.97 -0.08 5.82 16 16 O -0.59 -15.11 13.07 -35.23 -0.46 -15.57 16 17 C -0.53 -14.03 8.12 -34.44 -0.28 -14.31 16 18 H 0.06 1.66 7.78 -52.49 -0.41 1.25 16 19 C 0.07 1.84 5.28 -17.82 -0.09 1.74 16 20 N -0.89 -23.20 10.98 55.43 0.61 -22.60 16 21 Si 0.90 20.39 29.54 -169.99 -5.02 15.37 16 22 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 23 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 24 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 25 C 0.03 0.70 5.12 -2.86 -0.01 0.68 16 26 N -0.61 -12.24 7.91 -12.98 -0.10 -12.34 16 27 C 0.53 8.68 7.87 -154.94 -1.22 7.46 16 28 N -0.82 -9.43 9.04 31.36 0.28 -9.14 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.08 1.14 7.42 -51.93 -0.39 0.76 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.08 1.12 7.42 -51.93 -0.39 0.73 16 38 H 0.19 1.44 8.06 -52.49 -0.42 1.02 16 39 H 0.05 0.99 7.79 -51.93 -0.40 0.59 16 40 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 41 H 0.08 1.61 8.04 -51.93 -0.42 1.19 16 42 H 0.07 1.45 8.14 -51.93 -0.42 1.02 16 43 H 0.38 9.97 7.46 45.56 0.34 10.31 16 44 H 0.27 6.66 8.31 -40.82 -0.34 6.32 16 45 H 0.08 2.00 7.81 -51.93 -0.41 1.60 16 46 H 0.11 2.79 5.61 -51.93 -0.29 2.50 16 47 H 0.41 3.09 8.69 -40.82 -0.35 2.74 16 48 H 0.41 4.72 8.95 -40.82 -0.37 4.35 16 LS Contribution 385.82 15.07 5.81 5.81 Total: -1.00 -30.59 385.82 -11.44 -42.03 By element: Atomic # 1 Polarization: 25.59 SS G_CDS: -6.44 Total: 19.15 kcal Atomic # 6 Polarization: 13.91 SS G_CDS: -5.28 Total: 8.63 kcal Atomic # 7 Polarization: -75.37 SS G_CDS: -0.05 Total: -75.42 kcal Atomic # 8 Polarization: -15.11 SS G_CDS: -0.46 Total: -15.57 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -30.59 -11.44 -42.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596288708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.221 kcal (2) G-P(sol) polarization free energy of solvation -30.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds