Wall clock time and date at job start Wed Apr 1 2020 04:48:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.46763 * 2 1 4 4 C 1.52996 * 109.47340 * 239.99664 * 2 1 3 5 5 N 1.46498 * 109.47089 * 119.99420 * 2 1 3 6 6 N 1.40054 * 125.87606 * 359.97438 * 5 2 1 7 7 C 1.30247 * 109.69479 * 180.02562 * 6 5 2 8 8 C 1.41195 * 108.47338 * 359.97438 * 7 6 5 9 9 C 1.36325 * 125.87435 * 180.02562 * 5 2 1 10 10 N 1.33188 * 134.52575 * 359.95122 * 9 5 2 11 11 C 1.32217 * 120.62869 * 180.02562 * 10 9 5 12 12 N 1.38385 * 118.78364 * 179.97438 * 11 10 9 13 13 C 1.47842 * 110.99815 * 300.84277 * 12 11 10 14 14 C 1.54908 * 104.79796 * 213.63587 * 13 12 11 15 15 C 1.55140 * 101.65188 * 37.07070 * 14 13 12 16 16 O 1.42898 * 110.70534 * 82.72899 * 15 14 13 17 17 C 1.50698 * 110.70591 * 205.96327 * 15 14 13 18 18 H 1.07993 * 120.00065 * 355.05712 * 17 15 14 19 19 C 1.37883 * 119.99975 * 175.04982 * 17 15 14 20 20 N 1.31514 * 119.99809 * 0.02562 * 19 17 15 21 21 Si 1.86794 * 120.00022 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47073 * 90.00462 * 21 19 17 23 23 H 1.48496 * 109.47391 * 210.00167 * 21 19 17 24 24 H 1.48497 * 109.47458 * 330.00491 * 21 19 17 25 25 C 1.47442 * 110.99961 * 180.02562 * 12 11 10 26 26 N 1.32796 * 122.43780 * 0.02562 * 11 10 9 27 27 C 1.32745 * 121.12409 * 0.23409 * 26 11 10 28 28 N 1.38092 * 120.75114 * 179.68840 * 27 26 11 29 29 H 1.09001 * 109.47491 * 299.99890 * 1 2 3 30 30 H 1.08994 * 109.47522 * 60.00087 * 1 2 3 31 31 H 1.09000 * 109.46888 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47400 * 179.97438 * 3 2 1 33 33 H 1.09003 * 109.47298 * 299.99718 * 3 2 1 34 34 H 1.09005 * 109.47676 * 60.00153 * 3 2 1 35 35 H 1.08997 * 109.47245 * 300.00210 * 4 2 1 36 36 H 1.09004 * 109.46621 * 59.99700 * 4 2 1 37 37 H 1.09002 * 109.47021 * 179.97438 * 4 2 1 38 38 H 1.07999 * 125.76848 * 179.97438 * 7 6 5 39 39 H 1.09000 * 110.37832 * 332.46414 * 13 12 11 40 40 H 1.08999 * 110.37334 * 94.80724 * 13 12 11 41 41 H 1.09000 * 110.98774 * 278.98207 * 14 13 12 42 42 H 1.08997 * 110.99596 * 155.16205 * 14 13 12 43 43 H 0.96702 * 114.00244 * 184.94726 * 16 15 14 44 44 H 0.96999 * 120.00038 * 180.02562 * 20 19 17 45 45 H 1.09004 * 109.88572 * 242.66015 * 25 12 11 46 46 H 1.09001 * 109.89433 * 3.84311 * 25 12 11 47 47 H 0.96994 * 120.00606 * 179.85631 * 28 27 26 48 48 H 0.97006 * 120.00033 * 359.86207 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 7 2.0183 -0.6905 1.1962 6 7 1.2219 -1.2660 2.1943 7 6 1.9811 -1.7947 3.1111 8 6 3.3301 -1.5870 2.7495 9 6 3.3261 -0.8825 1.5299 10 7 4.4902 -0.5592 0.9693 11 6 5.6317 -0.8925 1.5471 12 7 6.8189 -0.5378 0.9310 13 6 6.9096 -1.1255 -0.4226 14 6 8.4162 -1.4238 -0.6243 15 6 8.8376 -1.8834 0.7963 16 8 8.5253 -3.2637 0.9941 17 6 10.3053 -1.6296 1.0249 18 1 10.9209 -1.2575 0.2194 19 6 10.8623 -1.8722 2.2627 20 7 10.1127 -2.3257 3.2436 21 14 12.6815 -1.5569 2.5463 22 1 12.8753 -0.1592 3.0089 23 1 13.1915 -2.4950 3.5783 24 1 13.4239 -1.7658 1.2773 25 6 7.9795 -0.9927 1.7185 26 7 5.6812 -1.5561 2.6964 27 6 4.5713 -1.9243 3.3245 28 7 4.6318 -2.6196 4.5160 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 3.1299 1.4426 0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.6767 -1.7489 -1.2491 36 1 1.6766 -0.2075 -2.1391 37 1 3.1300 -0.7209 -1.2493 38 1 1.6370 -2.3058 3.9981 39 1 6.3299 -2.0470 -0.4759 40 1 6.5605 -0.4129 -1.1699 41 1 8.9562 -0.5243 -0.9199 42 1 8.5623 -2.2219 -1.3522 43 1 8.6989 -3.5817 1.8907 44 1 10.5045 -2.4960 4.1144 45 1 8.5621 -0.1334 2.0504 46 1 7.6406 -1.5686 2.5796 47 1 3.8139 -2.8816 4.9668 48 1 5.4923 -2.8461 4.9023 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596288708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:48:50 Heat of formation + Delta-G solvation = 69.674608 kcal Electronic energy + Delta-G solvation = -32001.887470 eV Core-core repulsion = 27900.240326 eV Total energy + Delta-G solvation = -4101.647144 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.186 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.98167 -41.03377 -39.36563 -37.67037 -36.82939 -35.80318 -34.14882 -33.25840 -31.79266 -31.26891 -29.81809 -29.43699 -28.36157 -28.27048 -26.68015 -24.69802 -24.31264 -23.11000 -22.11155 -21.48200 -20.39488 -19.32932 -18.97556 -18.69839 -17.76022 -17.23650 -16.98216 -16.91808 -16.65326 -16.10063 -15.83918 -15.61327 -15.35389 -15.26089 -14.73953 -14.57304 -14.52651 -14.31098 -13.76982 -13.44381 -13.29389 -13.25282 -13.18162 -13.10562 -12.89446 -12.73956 -12.69617 -12.63911 -12.40772 -12.26097 -12.22931 -12.17318 -12.04921 -11.93651 -11.42165 -11.15848 -10.91641 -10.57230 -10.36991 -9.98966 -9.91353 -9.53488 -8.89405 -8.16073 -6.31076 -0.13387 0.54891 1.10371 1.44248 1.46367 1.52871 1.55462 2.27672 2.42506 2.55265 2.89725 3.07991 3.19890 3.63505 3.65263 3.74608 3.80642 3.85822 3.93999 4.00268 4.16114 4.20975 4.26936 4.45149 4.58001 4.61301 4.64121 4.70660 4.72626 4.81802 4.86604 4.89410 5.00177 5.10750 5.13157 5.16876 5.21906 5.24053 5.42420 5.47967 5.60226 5.64321 5.74011 5.84157 6.04292 6.16094 6.18379 6.32356 6.56509 6.73631 6.87191 7.37068 7.43911 7.48653 8.89147 Molecular weight = 346.19amu Principal moments of inertia in cm(-1) A = 0.017957 B = 0.003280 C = 0.002934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.904401 B = 8535.649526 C = 9541.002220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.181 3.819 3 C -0.155 4.155 4 C -0.155 4.155 5 N -0.375 5.375 6 N -0.274 5.274 7 C 0.118 3.882 8 C -0.372 4.372 9 C 0.368 3.632 10 N -0.595 5.595 11 C 0.566 3.434 12 N -0.466 5.466 13 C 0.083 3.917 14 C -0.112 4.112 15 C 0.227 3.773 16 O -0.593 6.593 17 C -0.558 4.558 18 H 0.058 0.942 19 C 0.032 3.968 20 N -0.904 5.904 21 Si 0.959 3.041 22 H -0.277 1.277 23 H -0.281 1.281 24 H -0.273 1.273 25 C 0.050 3.950 26 N -0.645 5.645 27 C 0.524 3.476 28 N -0.799 5.799 29 H 0.061 0.939 30 H 0.099 0.901 31 H 0.061 0.939 32 H 0.050 0.950 33 H 0.104 0.896 34 H 0.052 0.948 35 H 0.052 0.948 36 H 0.105 0.895 37 H 0.050 0.950 38 H 0.235 0.765 39 H 0.034 0.966 40 H 0.099 0.901 41 H 0.087 0.913 42 H 0.076 0.924 43 H 0.374 0.626 44 H 0.269 0.731 45 H 0.049 0.951 46 H 0.098 0.902 47 H 0.429 0.571 48 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.441 1.852 -0.550 19.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.100 3.900 3 C -0.213 4.213 4 C -0.214 4.214 5 N -0.166 5.166 6 N -0.087 5.087 7 C -0.078 4.078 8 C -0.391 4.391 9 C 0.120 3.880 10 N -0.328 5.328 11 C 0.206 3.794 12 N -0.186 5.186 13 C -0.042 4.042 14 C -0.150 4.150 15 C 0.187 3.813 16 O -0.401 6.401 17 C -0.596 4.596 18 H 0.077 0.923 19 C -0.170 4.170 20 N -0.543 5.543 21 Si 0.785 3.215 22 H -0.203 1.203 23 H -0.207 1.207 24 H -0.198 1.198 25 C -0.076 4.076 26 N -0.380 5.380 27 C 0.267 3.733 28 N -0.342 5.342 29 H 0.080 0.920 30 H 0.118 0.882 31 H 0.080 0.920 32 H 0.069 0.931 33 H 0.123 0.877 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.123 0.877 37 H 0.070 0.930 38 H 0.251 0.749 39 H 0.052 0.948 40 H 0.117 0.883 41 H 0.106 0.894 42 H 0.094 0.906 43 H 0.223 0.777 44 H 0.078 0.922 45 H 0.068 0.932 46 H 0.116 0.884 47 H 0.263 0.737 48 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -20.117 2.981 -2.071 20.442 hybrid contribution 1.712 -1.055 2.084 2.896 sum -18.405 1.926 0.012 18.505 Atomic orbital electron populations 1.21847 0.89825 1.03298 1.03795 1.20978 0.96872 0.91621 0.80534 1.22200 1.01755 0.93762 1.03592 1.22205 1.01798 1.00477 0.96887 1.48931 0.98974 1.48311 1.20377 1.76817 1.18473 1.14672 0.98748 1.24144 0.87680 0.96902 0.99057 1.19689 0.95578 1.20334 1.03464 1.18926 0.87309 0.91534 0.90259 1.67042 0.94997 1.32707 1.38070 1.20630 0.89426 0.83363 0.86008 1.60098 1.00006 1.53325 1.05183 1.22782 0.97068 0.97068 0.87283 1.22736 0.93761 1.01212 0.97322 1.19852 0.92092 0.78821 0.90571 1.86100 1.89267 1.28333 1.36389 1.21757 0.94940 1.45616 0.97328 0.92346 1.25689 1.02037 0.93707 0.95544 1.69816 1.36915 1.44737 1.02841 0.85555 0.80321 0.77906 0.77766 1.20285 1.20671 1.19771 1.23467 0.87378 0.98756 0.98034 1.67896 1.29976 1.24832 1.15270 1.18037 0.86256 0.83378 0.85616 1.42043 1.13653 1.58393 1.20146 0.91983 0.88220 0.91997 0.93122 0.87706 0.92905 0.92905 0.87680 0.93048 0.74891 0.94763 0.88254 0.89416 0.90582 0.77728 0.92213 0.93244 0.88426 0.73734 0.75367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.19 7.97 71.98 0.57 -1.61 16 2 C 0.18 4.12 1.21 3.60 0.00 4.13 16 3 C -0.15 -3.43 8.52 71.98 0.61 -2.81 16 4 C -0.16 -3.43 8.52 71.98 0.61 -2.81 16 5 N -0.37 -10.75 3.49 -305.10 -1.07 -11.82 16 6 N -0.27 -7.03 11.51 -56.44 -0.65 -7.68 16 7 C 0.12 2.64 11.86 85.65 1.02 3.66 16 8 C -0.37 -11.31 6.14 -21.27 -0.13 -11.44 16 9 C 0.37 12.72 7.11 134.14 0.95 13.68 16 10 N -0.60 -23.25 9.02 -196.06 -1.77 -25.02 16 11 C 0.57 24.30 6.92 261.48 1.81 26.11 16 12 N -0.47 -20.81 5.25 -698.74 -3.66 -24.47 16 13 C 0.08 3.40 6.39 86.77 0.55 3.95 16 14 C -0.11 -4.84 6.22 31.98 0.20 -4.64 16 15 C 0.23 11.46 0.85 -10.37 -0.01 11.45 16 16 O -0.59 -31.46 13.07 -148.98 -1.95 -33.40 16 17 C -0.56 -30.03 8.12 25.60 0.21 -29.82 16 18 H 0.06 3.11 7.78 -2.91 -0.02 3.09 16 19 C 0.03 1.66 5.28 84.66 0.45 2.11 16 20 N -0.90 -47.94 10.98 21.45 0.24 -47.70 16 21 Si 0.96 42.14 29.54 68.60 2.03 44.17 16 22 H -0.28 -12.01 7.11 99.48 0.71 -11.31 16 23 H -0.28 -12.06 7.11 99.48 0.71 -11.36 16 24 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 25 C 0.05 2.50 5.12 86.63 0.44 2.94 16 26 N -0.64 -26.49 7.91 -194.98 -1.54 -28.03 16 27 C 0.52 16.88 7.87 133.70 1.05 17.93 16 28 N -0.80 -17.12 9.04 -54.69 -0.49 -17.62 16 29 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.06 1.10 8.14 -2.39 -0.02 1.09 16 32 H 0.05 1.44 7.42 -2.39 -0.02 1.42 16 33 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.05 1.20 8.14 -2.38 -0.02 1.18 16 35 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.05 1.44 7.42 -2.39 -0.02 1.42 16 38 H 0.23 2.56 8.06 -2.91 -0.02 2.54 16 39 H 0.03 1.46 7.79 -2.39 -0.02 1.44 16 40 H 0.10 3.54 8.14 -2.39 -0.02 3.52 16 41 H 0.09 3.59 8.04 -2.39 -0.02 3.57 16 42 H 0.08 3.14 8.14 -2.39 -0.02 3.12 16 43 H 0.37 20.32 7.46 -74.06 -0.55 19.77 16 44 H 0.27 13.54 8.31 -92.71 -0.77 12.77 16 45 H 0.05 2.67 7.81 -2.39 -0.02 2.65 16 46 H 0.10 5.11 5.61 -2.39 -0.01 5.10 16 47 H 0.43 5.32 8.69 -92.71 -0.81 4.51 16 48 H 0.42 9.11 8.95 -92.70 -0.83 8.28 16 Total: -1.00 -68.91 385.82 -1.69 -70.60 By element: Atomic # 1 Polarization: 49.32 SS G_CDS: -1.16 Total: 48.16 kcal Atomic # 6 Polarization: 24.47 SS G_CDS: 8.35 Total: 32.82 kcal Atomic # 7 Polarization: -153.39 SS G_CDS: -8.95 Total: -162.34 kcal Atomic # 8 Polarization: -31.46 SS G_CDS: -1.95 Total: -33.40 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.17 kcal Total: -68.91 -1.69 -70.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596288708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.271 kcal (2) G-P(sol) polarization free energy of solvation -68.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.597 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds