Wall clock time and date at job start Wed Apr 1 2020 04:48:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42907 * 113.99610 * 2 1 4 4 C 1.52997 * 109.46939 * 60.00240 * 3 2 1 5 5 C 1.53000 * 109.47392 * 300.00201 * 3 2 1 6 6 C 1.52997 * 109.47062 * 179.97438 * 3 2 1 7 7 N 1.46495 * 109.46935 * 65.00143 * 6 3 2 8 8 C 1.46759 * 124.34154 * 269.98335 * 7 6 3 9 9 C 1.54269 * 105.51373 * 197.29841 * 8 7 6 10 10 F 1.39892 * 112.51731 * 95.49029 * 9 8 7 11 11 C 1.53451 * 110.25778 * 223.46192 * 9 8 7 12 12 N 1.47030 * 108.07439 * 92.73380 * 11 9 8 13 13 C 1.46903 * 110.99929 * 236.00940 * 12 11 9 14 14 C 1.53001 * 109.46874 * 170.00150 * 13 12 11 15 15 C 1.50704 * 109.46918 * 180.02562 * 14 13 12 16 16 H 1.07999 * 119.99582 * 359.97438 * 15 14 13 17 17 C 1.37875 * 120.00132 * 180.02562 * 15 14 13 18 18 N 1.31516 * 120.00272 * 179.97438 * 17 15 14 19 19 Si 1.86803 * 119.99851 * 359.97438 * 17 15 14 20 20 H 1.48498 * 109.47028 * 90.00409 * 19 17 15 21 21 H 1.48502 * 109.47176 * 210.00350 * 19 17 15 22 22 H 1.48502 * 109.47174 * 330.00302 * 19 17 15 23 23 C 1.49210 * 109.42668 * 358.55456 * 12 11 9 24 24 C 1.54028 * 105.79960 * 18.36579 * 23 12 11 25 25 F 1.39905 * 112.98426 * 95.79417 * 24 23 12 26 26 C 1.34370 * 124.34372 * 90.02810 * 7 6 3 27 27 O 1.21290 * 124.88201 * 359.92951 * 26 7 6 28 28 H 1.08997 * 109.46871 * 60.00278 * 1 2 3 29 29 H 1.09001 * 109.46615 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46727 * 299.99745 * 1 2 3 31 31 H 1.09003 * 109.47478 * 180.02562 * 4 3 2 32 32 H 1.09005 * 109.47253 * 299.99654 * 4 3 2 33 33 H 1.09004 * 109.47832 * 59.99584 * 4 3 2 34 34 H 1.08998 * 109.46490 * 299.99842 * 5 3 2 35 35 H 1.08998 * 109.46816 * 59.99541 * 5 3 2 36 36 H 1.09000 * 109.47120 * 180.02562 * 5 3 2 37 37 H 1.09008 * 109.47185 * 305.00322 * 6 3 2 38 38 H 1.08997 * 109.47663 * 185.00255 * 6 3 2 39 39 H 1.09002 * 110.24334 * 316.30583 * 8 7 6 40 40 H 1.09003 * 110.24229 * 78.28723 * 8 7 6 41 41 H 1.08995 * 109.74968 * 212.39296 * 11 9 8 42 42 H 1.08993 * 109.75079 * 333.07226 * 11 9 8 43 43 H 1.08994 * 109.46927 * 289.99463 * 13 12 11 44 44 H 1.08993 * 109.47113 * 50.00028 * 13 12 11 45 45 H 1.09006 * 109.47177 * 299.99375 * 14 13 12 46 46 H 1.08992 * 109.47982 * 59.99612 * 14 13 12 47 47 H 0.97000 * 120.00166 * 179.97438 * 18 17 15 48 48 H 1.08999 * 110.29564 * 259.46668 * 23 12 11 49 49 H 1.08994 * 110.69874 * 137.48275 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 1.5588 2.0647 1.2493 5 6 1.5587 2.0649 -1.2492 6 6 3.5354 1.1848 0.0006 7 7 3.9766 0.5642 -1.2509 8 6 4.1395 -0.8812 -1.4458 9 6 5.0156 -1.0315 -2.7066 10 9 6.3720 -1.1863 -2.4011 11 6 4.4590 -2.1387 -3.6116 12 7 3.5507 -1.5173 -4.5866 13 6 2.2171 -2.1306 -4.5289 14 6 1.2393 -1.3047 -5.3673 15 6 -0.1290 -1.9335 -5.3076 16 1 -0.2853 -2.8324 -4.7298 17 6 -1.1808 -1.3617 -5.9913 18 7 -2.3748 -1.9107 -5.9397 19 14 -0.9101 0.1928 -6.9912 20 1 -0.5301 -0.1717 -8.3797 21 1 -2.1621 0.9910 -7.0140 22 1 0.1771 0.9948 -6.3748 23 6 3.4701 -0.0505 -4.3251 24 6 4.7015 0.2904 -3.4650 25 9 5.7810 0.7628 -4.2193 26 6 4.2850 1.2454 -2.3673 27 8 4.2361 2.4521 -2.4794 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 2.0016 3.0607 1.2491 32 1 0.4721 2.1508 1.2493 33 1 1.8803 1.5238 2.1393 34 1 1.8804 1.5240 -2.1391 35 1 0.4721 2.1508 -1.2492 36 1 2.0024 3.0605 -1.2494 37 1 3.8508 0.5686 0.8427 38 1 3.9785 2.1767 0.0903 39 1 4.6394 -1.3240 -0.5843 40 1 3.1691 -1.3523 -1.6026 41 1 5.2776 -2.6335 -4.1341 42 1 3.9129 -2.8657 -3.0107 43 1 2.2665 -3.1454 -4.9233 44 1 1.8747 -2.1590 -3.4945 45 1 1.1898 -0.2897 -4.9728 46 1 1.5816 -1.2762 -6.4016 47 1 -3.1149 -1.5082 -6.4204 48 1 2.5571 0.1865 -3.7789 49 1 3.5018 0.5097 -5.2595 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274040729.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:48:58 Heat of formation + Delta-G solvation = -148.148762 kcal Electronic energy + Delta-G solvation = -34143.438549 eV Core-core repulsion = 29549.363938 eV Total energy + Delta-G solvation = -4594.074611 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.186 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -48.46455 -47.46064 -41.09488 -39.04575 -38.13958 -36.13554 -33.95704 -33.03900 -31.57998 -30.09098 -29.44882 -27.70088 -27.44075 -26.40686 -26.03814 -24.48924 -22.34312 -21.37424 -20.52930 -20.07661 -19.76869 -17.90409 -17.18177 -16.86735 -16.72347 -16.37827 -15.90997 -15.77030 -15.57893 -15.39212 -15.06819 -14.82055 -14.51705 -14.35821 -14.08159 -13.96076 -13.88080 -13.43506 -13.32041 -13.20030 -13.09440 -12.68268 -12.65335 -12.57548 -12.53780 -12.34006 -12.17289 -11.97373 -11.83507 -11.57129 -11.42329 -11.30341 -11.09275 -10.84132 -10.77396 -10.31109 -9.98054 -9.90705 -9.84538 -9.68798 -9.31675 -9.08225 -8.62750 -8.20819 -6.13326 -4.12480 2.09476 2.38823 3.26475 3.28590 3.34339 3.37669 3.51041 3.55838 3.61138 3.98683 4.12320 4.26832 4.31859 4.38060 4.46093 4.64030 4.69034 4.92162 5.01132 5.13407 5.20805 5.21677 5.23844 5.26333 5.31693 5.41181 5.41407 5.46633 5.54371 5.65067 5.68790 5.74205 5.79260 5.82003 5.88641 5.91681 6.01379 6.10911 6.20194 6.51920 6.59723 6.83702 6.91406 7.07191 7.21236 7.34988 7.69512 7.71913 8.41465 8.89675 9.48764 10.99547 Molecular weight = 346.19amu Principal moments of inertia in cm(-1) A = 0.009007 B = 0.005162 C = 0.003993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3107.978829 B = 5422.940659 C = 7010.460840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.376 6.376 3 C 0.092 3.908 4 C -0.175 4.175 5 C -0.176 4.176 6 C 0.145 3.855 7 N -0.601 5.601 8 C 0.092 3.908 9 C 0.074 3.926 10 F -0.170 7.170 11 C 0.037 3.963 12 N -0.517 5.517 13 C 0.061 3.939 14 C -0.015 4.015 15 C -0.521 4.521 16 H 0.073 0.927 17 C 0.071 3.929 18 N -0.900 5.900 19 Si 0.876 3.124 20 H -0.275 1.275 21 H -0.288 1.288 22 H -0.266 1.266 23 C 0.043 3.957 24 C 0.063 3.937 25 F -0.158 7.158 26 C 0.513 3.487 27 O -0.498 6.498 28 H 0.049 0.951 29 H 0.089 0.911 30 H 0.041 0.959 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.061 0.939 35 H 0.063 0.937 36 H 0.071 0.929 37 H 0.093 0.907 38 H 0.101 0.899 39 H 0.102 0.898 40 H 0.107 0.893 41 H 0.100 0.900 42 H 0.084 0.916 43 H 0.080 0.920 44 H 0.036 0.964 45 H 0.016 0.984 46 H 0.024 0.976 47 H 0.264 0.736 48 H 0.084 0.916 49 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.766 3.937 15.223 19.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.296 6.296 3 C 0.051 3.949 4 C -0.233 4.233 5 C -0.233 4.233 6 C 0.023 3.977 7 N -0.335 5.335 8 C -0.032 4.032 9 C 0.053 3.947 10 F -0.150 7.150 11 C -0.092 4.092 12 N -0.242 5.242 13 C -0.065 4.065 14 C -0.052 4.052 15 C -0.560 4.560 16 H 0.091 0.909 17 C -0.131 4.131 18 N -0.539 5.539 19 Si 0.703 3.297 20 H -0.200 1.200 21 H -0.214 1.214 22 H -0.190 1.190 23 C -0.085 4.085 24 C 0.040 3.960 25 F -0.138 7.138 26 C 0.297 3.703 27 O -0.371 6.371 28 H 0.068 0.932 29 H 0.107 0.893 30 H 0.059 0.941 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.090 0.910 37 H 0.111 0.889 38 H 0.119 0.881 39 H 0.120 0.880 40 H 0.125 0.875 41 H 0.118 0.882 42 H 0.102 0.898 43 H 0.098 0.902 44 H 0.054 0.946 45 H 0.034 0.966 46 H 0.042 0.958 47 H 0.074 0.926 48 H 0.102 0.898 49 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 11.883 4.394 14.666 19.380 hybrid contribution -0.398 1.140 0.180 1.221 sum 11.485 5.534 14.845 19.568 Atomic orbital electron populations 1.22824 0.80723 1.03208 1.00267 1.87923 1.20172 1.26410 1.95069 1.21982 0.93349 0.84364 0.95194 1.22345 1.02593 1.00852 0.97536 1.22415 1.01979 1.01138 0.97781 1.21533 0.91784 0.99784 0.84574 1.47878 1.66421 1.07109 1.12061 1.22835 1.00987 0.82033 0.97297 1.23029 0.78864 0.96587 0.96234 1.92915 1.31903 1.96293 1.93888 1.23092 0.98606 0.94794 0.92666 1.64014 1.12733 1.01037 1.46402 1.22498 0.84969 0.99518 0.99507 1.19706 0.94553 0.95312 0.95676 1.20970 0.91314 1.12337 1.31342 0.90912 1.24959 0.95023 0.97060 0.96010 1.69900 1.00620 1.40352 1.43007 0.86842 0.77748 0.83891 0.81233 1.20027 1.21378 1.19029 1.23615 0.93408 0.91220 1.00225 1.22806 0.88239 0.93399 0.91605 1.92939 1.55110 1.89202 1.76508 1.20547 0.77661 0.88334 0.83782 1.90756 1.52306 1.12580 1.81466 0.93209 0.89303 0.94060 0.91235 0.91462 0.91540 0.91993 0.91827 0.90982 0.88905 0.88105 0.88021 0.87478 0.88213 0.89819 0.90159 0.94613 0.96622 0.95810 0.92635 0.89822 0.87303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.21 101.05 1.03 1.32 16 2 O -0.38 -4.48 10.17 -35.23 -0.36 -4.84 16 3 C 0.09 0.97 0.91 -90.62 -0.08 0.89 16 4 C -0.18 -1.43 8.25 37.16 0.31 -1.12 16 5 C -0.18 -2.25 7.06 37.16 0.26 -1.99 16 6 C 0.14 1.44 5.17 -4.05 -0.02 1.42 16 7 N -0.60 -7.33 2.53 -172.54 -0.44 -7.77 16 8 C 0.09 1.00 6.37 -3.24 -0.02 0.98 16 9 C 0.07 0.93 1.86 -88.34 -0.16 0.77 16 10 F -0.17 -2.26 17.07 2.25 0.04 -2.22 16 11 C 0.04 0.47 6.17 -3.52 -0.02 0.45 16 12 N -0.52 -8.19 5.32 -231.56 -1.23 -9.42 16 13 C 0.06 1.11 4.78 -3.82 -0.02 1.09 16 14 C -0.01 -0.33 3.68 -27.88 -0.10 -0.44 16 15 C -0.52 -14.01 9.66 -34.44 -0.33 -14.34 16 16 H 0.07 2.09 7.99 -52.49 -0.42 1.67 16 17 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 18 N -0.90 -26.79 13.96 55.43 0.77 -26.02 16 19 Si 0.88 21.29 27.47 -169.99 -4.67 16.62 16 20 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 22 H -0.27 -6.23 6.54 56.52 0.37 -5.87 16 23 C 0.04 0.70 4.86 -2.00 -0.01 0.69 16 24 C 0.06 0.96 1.79 -89.54 -0.16 0.80 16 25 F -0.16 -2.68 17.05 2.25 0.04 -2.64 16 26 C 0.51 7.80 5.13 -10.85 -0.06 7.74 16 27 O -0.50 -8.77 16.50 5.55 0.09 -8.67 16 28 H 0.05 0.62 6.42 -51.93 -0.33 0.29 16 29 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.04 0.38 6.42 -51.93 -0.33 0.05 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.55 6.54 -51.93 -0.34 0.21 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.06 0.95 5.59 -51.93 -0.29 0.66 16 35 H 0.06 0.79 6.54 -51.93 -0.34 0.45 16 36 H 0.07 0.92 7.90 -51.93 -0.41 0.51 16 37 H 0.09 0.72 8.14 -51.92 -0.42 0.30 16 38 H 0.10 0.97 7.92 -51.93 -0.41 0.56 16 39 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.11 1.21 7.61 -51.93 -0.40 0.81 16 41 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 42 H 0.08 0.89 7.00 -51.93 -0.36 0.53 16 43 H 0.08 1.44 8.14 -51.93 -0.42 1.01 16 44 H 0.04 0.62 7.95 -51.93 -0.41 0.21 16 45 H 0.02 0.35 5.33 -51.93 -0.28 0.08 16 46 H 0.02 0.55 7.57 -51.93 -0.39 0.15 16 47 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 48 H 0.08 1.42 5.53 -51.93 -0.29 1.14 16 49 H 0.11 1.84 8.14 -51.93 -0.42 1.42 16 LS Contribution 381.93 15.07 5.76 5.76 Total: -1.00 -31.70 381.93 -7.04 -38.73 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -7.55 Total: 0.31 kcal Atomic # 6 Polarization: -0.36 SS G_CDS: 0.51 Total: 0.15 kcal Atomic # 7 Polarization: -42.31 SS G_CDS: -0.89 Total: -43.20 kcal Atomic # 8 Polarization: -13.25 SS G_CDS: -0.27 Total: -13.52 kcal Atomic # 9 Polarization: -4.93 SS G_CDS: 0.08 Total: -4.86 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -4.67 Total: 16.62 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -31.70 -7.04 -38.73 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274040729.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.414 kcal (2) G-P(sol) polarization free energy of solvation -31.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds