Wall clock time and date at job start Wed Apr 1 2020 04:48:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42907 * 113.99610 * 2 1 4 4 C 1.52997 * 109.46939 * 60.00240 * 3 2 1 5 5 C 1.53000 * 109.47392 * 300.00201 * 3 2 1 6 6 C 1.52997 * 109.47062 * 179.97438 * 3 2 1 7 7 N 1.46495 * 109.46935 * 65.00143 * 6 3 2 8 8 C 1.46759 * 124.34154 * 269.98335 * 7 6 3 9 9 C 1.54269 * 105.51373 * 197.29841 * 8 7 6 10 10 F 1.39892 * 112.51731 * 95.49029 * 9 8 7 11 11 C 1.53451 * 110.25778 * 223.46192 * 9 8 7 12 12 N 1.47030 * 108.07439 * 92.73380 * 11 9 8 13 13 C 1.46903 * 110.99929 * 236.00940 * 12 11 9 14 14 C 1.53001 * 109.46874 * 170.00150 * 13 12 11 15 15 C 1.50704 * 109.46918 * 180.02562 * 14 13 12 16 16 H 1.07999 * 119.99582 * 359.97438 * 15 14 13 17 17 C 1.37875 * 120.00132 * 180.02562 * 15 14 13 18 18 N 1.31516 * 120.00272 * 179.97438 * 17 15 14 19 19 Si 1.86803 * 119.99851 * 359.97438 * 17 15 14 20 20 H 1.48498 * 109.47028 * 90.00409 * 19 17 15 21 21 H 1.48502 * 109.47176 * 210.00350 * 19 17 15 22 22 H 1.48502 * 109.47174 * 330.00302 * 19 17 15 23 23 C 1.49210 * 109.42668 * 358.55456 * 12 11 9 24 24 C 1.54028 * 105.79960 * 18.36579 * 23 12 11 25 25 F 1.39905 * 112.98426 * 95.79417 * 24 23 12 26 26 C 1.34370 * 124.34372 * 90.02810 * 7 6 3 27 27 O 1.21290 * 124.88201 * 359.92951 * 26 7 6 28 28 H 1.08997 * 109.46871 * 60.00278 * 1 2 3 29 29 H 1.09001 * 109.46615 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46727 * 299.99745 * 1 2 3 31 31 H 1.09003 * 109.47478 * 180.02562 * 4 3 2 32 32 H 1.09005 * 109.47253 * 299.99654 * 4 3 2 33 33 H 1.09004 * 109.47832 * 59.99584 * 4 3 2 34 34 H 1.08998 * 109.46490 * 299.99842 * 5 3 2 35 35 H 1.08998 * 109.46816 * 59.99541 * 5 3 2 36 36 H 1.09000 * 109.47120 * 180.02562 * 5 3 2 37 37 H 1.09008 * 109.47185 * 305.00322 * 6 3 2 38 38 H 1.08997 * 109.47663 * 185.00255 * 6 3 2 39 39 H 1.09002 * 110.24334 * 316.30583 * 8 7 6 40 40 H 1.09003 * 110.24229 * 78.28723 * 8 7 6 41 41 H 1.08995 * 109.74968 * 212.39296 * 11 9 8 42 42 H 1.08993 * 109.75079 * 333.07226 * 11 9 8 43 43 H 1.08994 * 109.46927 * 289.99463 * 13 12 11 44 44 H 1.08993 * 109.47113 * 50.00028 * 13 12 11 45 45 H 1.09006 * 109.47177 * 299.99375 * 14 13 12 46 46 H 1.08992 * 109.47982 * 59.99612 * 14 13 12 47 47 H 0.97000 * 120.00166 * 179.97438 * 18 17 15 48 48 H 1.08999 * 110.29564 * 259.46668 * 23 12 11 49 49 H 1.08994 * 110.69874 * 137.48275 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 1.5588 2.0647 1.2493 5 6 1.5587 2.0649 -1.2492 6 6 3.5354 1.1848 0.0006 7 7 3.9766 0.5642 -1.2509 8 6 4.1395 -0.8812 -1.4458 9 6 5.0156 -1.0315 -2.7066 10 9 6.3720 -1.1863 -2.4011 11 6 4.4590 -2.1387 -3.6116 12 7 3.5507 -1.5173 -4.5866 13 6 2.2171 -2.1306 -4.5289 14 6 1.2393 -1.3047 -5.3673 15 6 -0.1290 -1.9335 -5.3076 16 1 -0.2853 -2.8324 -4.7298 17 6 -1.1808 -1.3617 -5.9913 18 7 -2.3748 -1.9107 -5.9397 19 14 -0.9101 0.1928 -6.9912 20 1 -0.5301 -0.1717 -8.3797 21 1 -2.1621 0.9910 -7.0140 22 1 0.1771 0.9948 -6.3748 23 6 3.4701 -0.0505 -4.3251 24 6 4.7015 0.2904 -3.4650 25 9 5.7810 0.7628 -4.2193 26 6 4.2850 1.2454 -2.3673 27 8 4.2361 2.4521 -2.4794 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 2.0016 3.0607 1.2491 32 1 0.4721 2.1508 1.2493 33 1 1.8803 1.5238 2.1393 34 1 1.8804 1.5240 -2.1391 35 1 0.4721 2.1508 -1.2492 36 1 2.0024 3.0605 -1.2494 37 1 3.8508 0.5686 0.8427 38 1 3.9785 2.1767 0.0903 39 1 4.6394 -1.3240 -0.5843 40 1 3.1691 -1.3523 -1.6026 41 1 5.2776 -2.6335 -4.1341 42 1 3.9129 -2.8657 -3.0107 43 1 2.2665 -3.1454 -4.9233 44 1 1.8747 -2.1590 -3.4945 45 1 1.1898 -0.2897 -4.9728 46 1 1.5816 -1.2762 -6.4016 47 1 -3.1149 -1.5082 -6.4204 48 1 2.5571 0.1865 -3.7789 49 1 3.5018 0.5097 -5.2595 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274040729.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:48:57 Heat of formation + Delta-G solvation = -170.051050 kcal Electronic energy + Delta-G solvation = -34144.388304 eV Core-core repulsion = 29549.363938 eV Total energy + Delta-G solvation = -4595.024366 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.186 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -49.60613 -48.61698 -42.16438 -40.01368 -39.31937 -37.28415 -35.45407 -34.44520 -33.04604 -31.32150 -30.76204 -28.69751 -28.32380 -27.53849 -27.07932 -25.91704 -23.82147 -22.44177 -21.58999 -21.50775 -20.82256 -19.16819 -18.79440 -18.19790 -17.76212 -17.33195 -16.99279 -16.82355 -16.79051 -16.53273 -16.27951 -16.03477 -15.85130 -15.63993 -15.40568 -15.23541 -15.01326 -14.75631 -14.46634 -14.28109 -14.20846 -14.13719 -13.91131 -13.73447 -13.44638 -13.43355 -13.25141 -13.07561 -12.95216 -12.87486 -12.70868 -12.46951 -12.30328 -12.07392 -11.96986 -11.77895 -11.70733 -11.68662 -11.38610 -11.02608 -10.78138 -10.58167 -10.05212 -9.48483 -8.31025 -6.33362 0.94556 1.31807 1.34567 1.40502 1.43574 2.19527 2.32252 2.44500 2.50657 2.73268 2.83381 2.96645 3.05186 3.15371 3.24147 3.62723 3.79977 3.82163 3.94036 4.15688 4.21118 4.28841 4.31979 4.33658 4.41793 4.43811 4.46885 4.50620 4.53323 4.56805 4.59390 4.63126 4.78445 4.81495 4.87996 4.89509 4.96235 5.11390 5.14528 5.20507 5.28636 5.37633 5.55481 5.57852 5.69037 5.90480 6.20189 6.26200 6.61986 6.73890 7.31123 8.84891 Molecular weight = 346.19amu Principal moments of inertia in cm(-1) A = 0.009007 B = 0.005162 C = 0.003993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3107.978829 B = 5422.940659 C = 7010.460840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.385 6.385 3 C 0.092 3.908 4 C -0.170 4.170 5 C -0.173 4.173 6 C 0.139 3.861 7 N -0.593 5.593 8 C 0.093 3.907 9 C 0.085 3.915 10 F -0.170 7.170 11 C 0.037 3.963 12 N -0.522 5.522 13 C 0.075 3.925 14 C -0.011 4.011 15 C -0.521 4.521 16 H 0.045 0.955 17 C 0.017 3.983 18 N -0.944 5.944 19 Si 0.933 3.067 20 H -0.268 1.268 21 H -0.285 1.285 22 H -0.256 1.256 23 C 0.045 3.955 24 C 0.052 3.948 25 F -0.171 7.171 26 C 0.507 3.493 27 O -0.532 6.532 28 H 0.028 0.972 29 H 0.089 0.911 30 H 0.063 0.937 31 H 0.078 0.922 32 H 0.066 0.934 33 H 0.083 0.917 34 H 0.032 0.968 35 H 0.060 0.940 36 H 0.067 0.933 37 H 0.126 0.874 38 H 0.105 0.895 39 H 0.138 0.862 40 H 0.108 0.892 41 H 0.112 0.888 42 H 0.110 0.890 43 H 0.084 0.916 44 H 0.042 0.958 45 H 0.014 0.986 46 H 0.019 0.981 47 H 0.266 0.734 48 H 0.073 0.927 49 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.270 3.768 17.155 22.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.305 6.305 3 C 0.052 3.948 4 C -0.227 4.227 5 C -0.231 4.231 6 C 0.018 3.982 7 N -0.324 5.324 8 C -0.030 4.030 9 C 0.064 3.936 10 F -0.150 7.150 11 C -0.092 4.092 12 N -0.247 5.247 13 C -0.051 4.051 14 C -0.049 4.049 15 C -0.560 4.560 16 H 0.063 0.937 17 C -0.181 4.181 18 N -0.585 5.585 19 Si 0.757 3.243 20 H -0.193 1.193 21 H -0.211 1.211 22 H -0.180 1.180 23 C -0.083 4.083 24 C 0.028 3.972 25 F -0.152 7.152 26 C 0.291 3.709 27 O -0.409 6.409 28 H 0.047 0.953 29 H 0.107 0.893 30 H 0.082 0.918 31 H 0.097 0.903 32 H 0.085 0.915 33 H 0.102 0.898 34 H 0.051 0.949 35 H 0.079 0.921 36 H 0.086 0.914 37 H 0.144 0.856 38 H 0.123 0.877 39 H 0.155 0.845 40 H 0.126 0.874 41 H 0.130 0.870 42 H 0.128 0.872 43 H 0.102 0.898 44 H 0.061 0.939 45 H 0.032 0.968 46 H 0.037 0.963 47 H 0.075 0.925 48 H 0.091 0.909 49 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 13.406 4.199 16.625 21.766 hybrid contribution -0.868 1.141 -0.399 1.488 sum 12.537 5.340 16.226 21.189 Atomic orbital electron populations 1.22836 0.80644 1.03278 1.00331 1.87894 1.20337 1.27116 1.95109 1.22048 0.93729 0.83929 0.95105 1.22301 1.02613 1.01201 0.96629 1.22393 1.01723 1.00940 0.98025 1.21828 0.91223 1.00767 0.84339 1.47989 1.65006 1.07581 1.11855 1.22996 1.00931 0.81272 0.97755 1.22962 0.79085 0.94789 0.96757 1.92922 1.32062 1.96140 1.93859 1.23198 0.98476 0.94894 0.92584 1.63916 1.11752 1.00789 1.48212 1.22207 0.85263 0.98759 0.98918 1.19595 0.93385 0.95591 0.96290 1.21289 0.93431 1.11283 1.29963 0.93693 1.25752 0.94813 1.00163 0.97387 1.70025 1.01616 1.42216 1.44609 0.85919 0.77949 0.80414 0.79969 1.19292 1.21070 1.17956 1.23454 0.93685 0.91446 0.99677 1.22953 0.87502 0.95075 0.91625 1.92901 1.55645 1.89578 1.77027 1.20586 0.77756 0.87967 0.84545 1.90727 1.54117 1.13878 1.82134 0.95314 0.89284 0.91837 0.90284 0.91542 0.89768 0.94891 0.92137 0.91362 0.85606 0.87689 0.84451 0.87448 0.86988 0.87199 0.89803 0.93933 0.96785 0.96309 0.92534 0.90931 0.88688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 10.21 113.37 1.16 1.69 16 2 O -0.39 -8.40 10.17 -148.98 -1.52 -9.92 16 3 C 0.09 1.78 0.91 -10.80 -0.01 1.77 16 4 C -0.17 -2.30 8.25 71.98 0.59 -1.70 16 5 C -0.17 -4.44 7.06 71.98 0.51 -3.93 16 6 C 0.14 2.39 5.17 86.38 0.45 2.84 16 7 N -0.59 -13.25 2.53 -818.40 -2.07 -15.32 16 8 C 0.09 1.73 6.37 86.76 0.55 2.29 16 9 C 0.08 1.94 1.86 -9.31 -0.02 1.92 16 10 F -0.17 -4.03 17.07 44.97 0.77 -3.26 16 11 C 0.04 0.82 6.17 86.43 0.53 1.35 16 12 N -0.52 -15.81 5.32 -886.52 -4.71 -20.52 16 13 C 0.08 2.63 4.78 86.30 0.41 3.04 16 14 C -0.01 -0.49 3.68 29.85 0.11 -0.38 16 15 C -0.52 -28.40 9.66 25.60 0.25 -28.16 16 16 H 0.04 2.64 7.99 -2.91 -0.02 2.62 16 17 C 0.02 0.94 5.47 84.65 0.46 1.40 16 18 N -0.94 -57.33 13.96 21.45 0.30 -57.03 16 19 Si 0.93 44.19 27.47 68.60 1.88 46.07 16 20 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 21 H -0.28 -13.28 7.11 99.48 0.71 -12.58 16 22 H -0.26 -11.56 6.54 99.48 0.65 -10.91 16 23 C 0.05 1.47 4.86 86.20 0.42 1.88 16 24 C 0.05 1.54 1.79 -10.09 -0.02 1.52 16 25 F -0.17 -5.79 17.05 44.97 0.77 -5.03 16 26 C 0.51 15.14 5.13 87.92 0.45 15.59 16 27 O -0.53 -18.94 16.50 -3.06 -0.05 -18.99 16 28 H 0.03 0.72 6.42 -2.39 -0.02 0.70 16 29 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.06 1.05 6.42 -2.39 -0.02 1.03 16 31 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.07 0.92 6.54 -2.38 -0.02 0.91 16 33 H 0.08 0.88 8.14 -2.38 -0.02 0.86 16 34 H 0.03 1.02 5.59 -2.39 -0.01 1.01 16 35 H 0.06 1.53 6.54 -2.39 -0.02 1.51 16 36 H 0.07 1.76 7.90 -2.39 -0.02 1.74 16 37 H 0.13 1.39 8.14 -2.38 -0.02 1.37 16 38 H 0.10 1.77 7.92 -2.39 -0.02 1.75 16 39 H 0.14 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.11 2.09 7.61 -2.39 -0.02 2.07 16 41 H 0.11 2.31 8.14 -2.39 -0.02 2.29 16 42 H 0.11 1.94 7.00 -2.39 -0.02 1.93 16 43 H 0.08 2.88 8.14 -2.39 -0.02 2.86 16 44 H 0.04 1.42 7.95 -2.39 -0.02 1.40 16 45 H 0.01 0.63 5.33 -2.38 -0.01 0.62 16 46 H 0.02 0.85 7.57 -2.39 -0.02 0.83 16 47 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 48 H 0.07 2.50 5.53 -2.39 -0.01 2.49 16 49 H 0.09 3.28 8.14 -2.39 -0.02 3.26 16 Total: -1.00 -70.05 381.93 2.12 -67.93 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: 0.90 Total: 14.93 kcal Atomic # 6 Polarization: -4.72 SS G_CDS: 5.85 Total: 1.13 kcal Atomic # 7 Polarization: -86.40 SS G_CDS: -6.49 Total: -92.88 kcal Atomic # 8 Polarization: -27.34 SS G_CDS: -1.57 Total: -28.90 kcal Atomic # 9 Polarization: -9.82 SS G_CDS: 1.53 Total: -8.28 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 1.88 Total: 46.07 kcal Total: -70.05 2.12 -67.93 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274040729.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.121 kcal (2) G-P(sol) polarization free energy of solvation -70.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds