Wall clock time and date at job start Wed Apr 1 2020 03:33:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47162 * 2 1 4 4 H 1.09002 * 109.46963 * 305.68710 * 3 2 1 5 5 C 1.50702 * 109.46971 * 185.69146 * 3 2 1 6 6 H 1.07998 * 120.00048 * 275.00138 * 5 3 2 7 7 C 1.37880 * 120.00344 * 95.00001 * 5 3 2 8 8 N 1.31511 * 120.00117 * 184.82889 * 7 5 3 9 9 Si 1.86800 * 119.99548 * 4.83073 * 7 5 3 10 10 H 1.48496 * 109.47295 * 84.86087 * 9 7 5 11 11 H 1.48505 * 109.46986 * 204.85902 * 9 7 5 12 12 H 1.48493 * 109.47373 * 324.85823 * 9 7 5 13 13 N 1.46495 * 109.47248 * 65.69126 * 3 2 1 14 14 C 1.34777 * 119.99726 * 274.99514 * 13 3 2 15 15 O 1.21271 * 120.00395 * 0.02562 * 14 13 3 16 16 C 1.50703 * 119.99672 * 180.02562 * 14 13 3 17 17 C 1.52999 * 109.46891 * 180.02562 * 16 14 13 18 18 C 1.53001 * 109.47122 * 180.02562 * 17 16 14 19 19 C 1.52999 * 109.47122 * 179.97438 * 18 17 16 20 20 N 1.46505 * 109.46971 * 179.97438 * 19 18 17 21 21 C 1.36315 * 126.28014 * 264.99925 * 20 19 18 22 22 N 1.30133 * 109.97876 * 180.02562 * 21 20 19 23 23 C 1.35470 * 109.44329 * 359.97438 * 22 21 20 24 24 C 1.37198 * 126.27590 * 85.00572 * 20 19 18 25 25 N 1.32893 * 134.92043 * 359.97438 * 24 20 19 26 26 C 1.31643 * 120.64145 * 180.02562 * 25 24 20 27 27 N 1.32042 * 122.46298 * 359.97438 * 26 25 24 28 28 C 1.32911 * 121.19434 * 0.02562 * 27 26 25 29 29 N 1.38389 * 120.77468 * 179.71948 * 28 27 26 30 30 H 1.08999 * 109.47386 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47140 * 300.00253 * 1 2 3 32 32 H 1.08997 * 109.46940 * 60.00240 * 1 2 3 33 33 H 1.08991 * 109.47409 * 239.99101 * 2 1 3 34 34 H 1.09013 * 109.46696 * 119.99462 * 2 1 3 35 35 H 0.96998 * 119.99490 * 180.02562 * 8 7 5 36 36 H 0.97000 * 120.00247 * 95.00327 * 13 3 2 37 37 H 1.09006 * 109.47116 * 60.00586 * 16 14 13 38 38 H 1.08992 * 109.47378 * 300.00454 * 16 14 13 39 39 H 1.09001 * 109.47277 * 60.00612 * 17 16 14 40 40 H 1.09006 * 109.47417 * 300.00240 * 17 16 14 41 41 H 1.08998 * 109.47457 * 59.99920 * 18 17 16 42 42 H 1.09000 * 109.47031 * 299.99820 * 18 17 16 43 43 H 1.09006 * 109.46973 * 59.99999 * 19 18 17 44 44 H 1.08992 * 109.47269 * 300.00021 * 19 18 17 45 45 H 1.08008 * 125.01047 * 0.03789 * 21 20 19 46 46 H 1.07999 * 118.77156 * 179.97438 * 26 25 24 47 47 H 0.97001 * 119.99872 * 0.02562 * 29 28 27 48 48 H 0.97001 * 119.99608 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5959 1.9849 -0.8347 5 6 3.5404 1.4448 -0.1409 6 1 4.1650 1.3333 0.7330 7 6 4.1158 1.5891 -1.3856 8 7 5.4205 1.4962 -1.5216 9 14 3.0420 1.9168 -2.8785 10 1 2.7756 3.3737 -2.9865 11 1 3.7404 1.4493 -4.1028 12 1 1.7564 1.1880 -2.7332 13 7 1.6667 2.0924 1.2587 14 6 0.4509 2.6589 1.3899 15 8 -0.3344 2.6303 0.4661 16 6 0.0671 3.3280 2.6845 17 6 -1.3535 3.8843 2.5696 18 6 -1.7430 4.5642 3.8837 19 6 -3.1634 5.1209 3.7685 20 7 -3.5365 5.7714 5.0271 21 6 -4.2294 5.2032 6.0543 22 7 -4.3859 6.0658 7.0160 23 6 -3.8045 7.2391 6.6684 24 6 -3.2526 7.0643 5.3880 25 7 -2.6179 8.0810 4.8139 26 6 -2.5055 9.2374 5.4329 27 7 -3.0075 9.4491 6.6357 28 6 -3.6588 8.4917 7.2882 29 7 -4.1764 8.7214 8.5510 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5139 -0.8898 34 1 1.8933 -0.5138 0.8902 35 1 5.8253 1.5981 -2.3972 36 1 2.2947 2.1152 1.9977 37 1 0.7609 4.1427 2.8921 38 1 0.1077 2.6008 3.4954 39 1 -2.0472 3.0694 2.3623 40 1 -1.3946 4.6115 1.7586 41 1 -1.0494 5.3791 4.0907 42 1 -1.7019 3.8373 4.6949 43 1 -3.8573 4.3062 3.5614 44 1 -3.2040 5.8479 2.9574 45 1 -4.5945 4.1868 6.0681 46 1 -1.9832 10.0430 4.9385 47 1 -4.0661 9.5893 8.9698 48 1 -4.6501 8.0146 9.0168 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001611083708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:33:02 Heat of formation + Delta-G solvation = 41.761931 kcal Electronic energy + Delta-G solvation = -29131.627511 eV Core-core repulsion = 25028.769982 eV Total energy + Delta-G solvation = -4102.857528 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.186 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.84102 -39.61589 -39.25199 -36.46855 -35.85791 -35.11819 -33.30577 -32.36778 -32.26326 -31.49786 -29.59454 -29.35052 -27.49877 -25.08518 -24.54989 -23.69547 -22.79853 -21.72484 -21.03779 -20.18433 -19.52898 -18.89006 -18.67028 -17.33804 -17.12200 -16.61068 -16.38542 -16.00490 -15.85110 -15.48184 -15.12089 -14.80483 -14.55888 -14.40161 -14.24616 -14.03614 -13.50018 -13.22957 -12.81993 -12.73855 -12.47157 -12.29956 -12.20779 -11.95012 -11.82590 -11.67090 -11.45413 -11.41263 -10.96271 -10.79549 -10.70176 -10.68089 -10.65725 -10.27417 -10.01961 -9.86155 -9.60091 -9.36347 -9.23005 -9.08130 -8.71444 -8.26311 -8.00262 -6.25304 -4.28910 0.55876 1.06826 1.96591 2.38445 2.91961 3.24010 3.30891 3.32893 3.39871 3.63946 3.67039 3.77948 3.97840 4.11057 4.30900 4.38386 4.47821 4.54777 4.71889 4.86466 4.97600 5.07652 5.18557 5.22654 5.36392 5.46096 5.57762 5.64670 5.69755 5.79588 6.02706 6.05376 6.06820 6.13115 6.22896 6.24046 6.35046 6.53812 6.62797 6.75716 6.76269 6.96306 6.98511 7.23862 7.26635 7.32415 7.35711 7.57029 8.01373 8.13121 8.57576 8.75638 9.00352 9.37103 10.86404 Molecular weight = 346.19amu Principal moments of inertia in cm(-1) A = 0.020350 B = 0.001785 C = 0.001714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.585861 B =15679.704814 C =16336.050392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.125 4.125 3 C 0.236 3.764 4 H 0.050 0.950 5 C -0.531 4.531 6 H 0.078 0.922 7 C 0.081 3.919 8 N -0.889 5.889 9 Si 0.874 3.126 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.259 1.259 13 N -0.705 5.705 14 C 0.499 3.501 15 O -0.556 6.556 16 C -0.142 4.142 17 C -0.097 4.097 18 C -0.134 4.134 19 C 0.111 3.889 20 N -0.468 5.468 21 C 0.252 3.748 22 N -0.468 5.468 23 C -0.113 4.113 24 C 0.302 3.698 25 N -0.554 5.554 26 C 0.361 3.639 27 N -0.595 5.595 28 C 0.506 3.494 29 N -0.820 5.820 30 H 0.029 0.971 31 H 0.049 0.951 32 H 0.050 0.950 33 H 0.060 0.940 34 H 0.050 0.950 35 H 0.268 0.732 36 H 0.393 0.607 37 H 0.088 0.912 38 H 0.086 0.914 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.072 0.928 42 H 0.069 0.931 43 H 0.100 0.900 44 H 0.098 0.902 45 H 0.222 0.778 46 H 0.204 0.796 47 H 0.409 0.591 48 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.975 10.380 18.603 29.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.164 4.164 3 C 0.133 3.867 4 H 0.068 0.932 5 C -0.569 4.569 6 H 0.096 0.904 7 C -0.124 4.124 8 N -0.525 5.525 9 Si 0.700 3.300 10 H -0.199 1.199 11 H -0.212 1.212 12 H -0.184 1.184 13 N -0.353 5.353 14 C 0.284 3.716 15 O -0.436 6.436 16 C -0.182 4.182 17 C -0.136 4.136 18 C -0.173 4.173 19 C -0.010 4.010 20 N -0.160 5.160 21 C -0.035 4.035 22 N -0.187 5.187 23 C -0.240 4.240 24 C 0.061 3.939 25 N -0.279 5.279 26 C 0.070 3.930 27 N -0.325 5.325 28 C 0.252 3.748 29 N -0.363 5.363 30 H 0.048 0.952 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.078 0.922 34 H 0.069 0.931 35 H 0.078 0.922 36 H 0.226 0.774 37 H 0.107 0.893 38 H 0.104 0.896 39 H 0.091 0.909 40 H 0.093 0.907 41 H 0.091 0.909 42 H 0.087 0.913 43 H 0.119 0.881 44 H 0.116 0.884 45 H 0.238 0.762 46 H 0.220 0.780 47 H 0.239 0.761 48 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -20.268 10.779 17.925 29.125 hybrid contribution -0.116 -0.380 -0.509 0.645 sum -20.384 10.399 17.416 28.757 Atomic orbital electron populations 1.21896 0.97449 0.98737 1.02009 1.22071 0.93649 0.99545 1.01158 1.19150 0.95440 0.89062 0.83001 0.93182 1.21021 0.88756 1.51741 0.95421 0.90418 1.24949 0.94884 0.93705 0.98833 1.69883 1.09765 1.48329 1.24503 0.86895 0.81243 0.79615 0.82200 1.19890 1.21228 1.18377 1.46624 1.14605 1.55923 1.18141 1.20494 0.82649 0.79151 0.89297 1.90646 1.50937 1.60304 1.41735 1.21662 0.98199 1.01291 0.97079 1.21193 0.95785 1.00653 0.95924 1.21993 0.95006 1.00903 0.99354 1.22049 0.97858 0.98333 0.82794 1.45290 1.44965 1.08182 1.17521 1.25377 0.95598 0.99961 0.82562 1.70201 1.21870 0.99364 1.27232 1.19692 1.11277 0.95635 0.97410 1.18764 0.96397 0.87261 0.91516 1.67294 1.22617 0.99700 1.38249 1.24474 0.90835 0.91814 0.85882 1.68042 1.19658 1.32174 1.12627 1.17793 0.85863 0.85354 0.85784 1.42203 1.60472 1.18661 1.14970 0.95196 0.93162 0.93137 0.92170 0.93091 0.92245 0.77439 0.89336 0.89572 0.90877 0.90703 0.90920 0.91258 0.88141 0.88362 0.76153 0.77958 0.76064 0.75090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.78 8.53 37.16 0.32 -2.46 16 2 C -0.13 -2.66 5.59 -26.73 -0.15 -2.81 16 3 C 0.24 5.45 1.89 -69.08 -0.13 5.32 16 4 H 0.05 1.27 4.73 -51.93 -0.25 1.03 16 5 C -0.53 -14.07 9.05 -34.44 -0.31 -14.38 16 6 H 0.08 2.17 8.06 -52.49 -0.42 1.75 16 7 C 0.08 2.24 5.47 -17.82 -0.10 2.14 16 8 N -0.89 -25.99 13.96 55.43 0.77 -25.21 16 9 Si 0.87 21.43 26.99 -169.99 -4.59 16.84 16 10 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.26 -6.25 6.82 56.52 0.39 -5.87 16 13 N -0.70 -13.48 5.03 -54.93 -0.28 -13.76 16 14 C 0.50 8.74 6.43 -10.98 -0.07 8.67 16 15 O -0.56 -11.52 13.12 5.56 0.07 -11.45 16 16 C -0.14 -1.71 5.70 -27.88 -0.16 -1.87 16 17 C -0.10 -1.02 4.50 -26.73 -0.12 -1.14 16 18 C -0.13 -1.11 5.54 -26.73 -0.15 -1.26 16 19 C 0.11 0.82 6.16 -4.04 -0.02 0.80 16 20 N -0.47 -4.22 2.79 -117.62 -0.33 -4.55 16 21 C 0.25 1.94 12.51 -89.51 -1.12 0.82 16 22 N -0.47 -4.70 11.28 -11.85 -0.13 -4.83 16 23 C -0.11 -1.26 7.17 -84.54 -0.61 -1.87 16 24 C 0.30 3.48 8.05 -155.80 -1.25 2.23 16 25 N -0.55 -6.46 10.47 -13.90 -0.15 -6.60 16 26 C 0.36 3.56 12.25 -92.07 -1.13 2.43 16 27 N -0.59 -6.10 10.45 -13.61 -0.14 -6.24 16 28 C 0.51 5.08 7.87 -154.65 -1.22 3.87 16 29 N -0.82 -5.23 9.05 31.37 0.28 -4.94 16 30 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.05 0.95 5.63 -51.93 -0.29 0.65 16 32 H 0.05 1.05 7.89 -51.93 -0.41 0.64 16 33 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 34 H 0.05 1.03 8.14 -51.92 -0.42 0.60 16 35 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 36 H 0.39 6.65 8.59 -40.82 -0.35 6.30 16 37 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.07 0.78 8.10 -51.93 -0.42 0.36 16 40 H 0.07 0.90 8.10 -51.93 -0.42 0.47 16 41 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.10 0.50 8.13 -51.93 -0.42 0.08 16 44 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 45 H 0.22 0.70 8.06 -52.48 -0.42 0.28 16 46 H 0.20 1.26 8.06 -52.49 -0.42 0.84 16 47 H 0.41 1.79 8.95 -40.82 -0.37 1.43 16 48 H 0.42 2.16 8.85 -40.82 -0.36 1.80 16 LS Contribution 397.47 15.07 5.99 5.99 Total: -1.00 -35.11 397.47 -11.80 -46.91 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: -7.09 Total: 7.35 kcal Atomic # 6 Polarization: 6.70 SS G_CDS: -6.22 Total: 0.48 kcal Atomic # 7 Polarization: -66.16 SS G_CDS: 0.03 Total: -66.13 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: 0.07 Total: -11.45 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.59 Total: 16.84 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -35.11 -11.80 -46.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001611083708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.676 kcal (2) G-P(sol) polarization free energy of solvation -35.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds