Wall clock time and date at job start Wed Apr 1 2020 03:33:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47162 * 2 1 4 4 H 1.09002 * 109.46963 * 305.68710 * 3 2 1 5 5 C 1.50702 * 109.46971 * 185.69146 * 3 2 1 6 6 H 1.07998 * 120.00048 * 275.00138 * 5 3 2 7 7 C 1.37880 * 120.00344 * 95.00001 * 5 3 2 8 8 N 1.31511 * 120.00117 * 184.82889 * 7 5 3 9 9 Si 1.86800 * 119.99548 * 4.83073 * 7 5 3 10 10 H 1.48496 * 109.47295 * 84.86087 * 9 7 5 11 11 H 1.48505 * 109.46986 * 204.85902 * 9 7 5 12 12 H 1.48493 * 109.47373 * 324.85823 * 9 7 5 13 13 N 1.46495 * 109.47248 * 65.69126 * 3 2 1 14 14 C 1.34777 * 119.99726 * 274.99514 * 13 3 2 15 15 O 1.21271 * 120.00395 * 0.02562 * 14 13 3 16 16 C 1.50703 * 119.99672 * 180.02562 * 14 13 3 17 17 C 1.52999 * 109.46891 * 180.02562 * 16 14 13 18 18 C 1.53001 * 109.47122 * 180.02562 * 17 16 14 19 19 C 1.52999 * 109.47122 * 179.97438 * 18 17 16 20 20 N 1.46505 * 109.46971 * 179.97438 * 19 18 17 21 21 C 1.36315 * 126.28014 * 264.99925 * 20 19 18 22 22 N 1.30133 * 109.97876 * 180.02562 * 21 20 19 23 23 C 1.35470 * 109.44329 * 359.97438 * 22 21 20 24 24 C 1.37198 * 126.27590 * 85.00572 * 20 19 18 25 25 N 1.32893 * 134.92043 * 359.97438 * 24 20 19 26 26 C 1.31643 * 120.64145 * 180.02562 * 25 24 20 27 27 N 1.32042 * 122.46298 * 359.97438 * 26 25 24 28 28 C 1.32911 * 121.19434 * 0.02562 * 27 26 25 29 29 N 1.38389 * 120.77468 * 179.71948 * 28 27 26 30 30 H 1.08999 * 109.47386 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47140 * 300.00253 * 1 2 3 32 32 H 1.08997 * 109.46940 * 60.00240 * 1 2 3 33 33 H 1.08991 * 109.47409 * 239.99101 * 2 1 3 34 34 H 1.09013 * 109.46696 * 119.99462 * 2 1 3 35 35 H 0.96998 * 119.99490 * 180.02562 * 8 7 5 36 36 H 0.97000 * 120.00247 * 95.00327 * 13 3 2 37 37 H 1.09006 * 109.47116 * 60.00586 * 16 14 13 38 38 H 1.08992 * 109.47378 * 300.00454 * 16 14 13 39 39 H 1.09001 * 109.47277 * 60.00612 * 17 16 14 40 40 H 1.09006 * 109.47417 * 300.00240 * 17 16 14 41 41 H 1.08998 * 109.47457 * 59.99920 * 18 17 16 42 42 H 1.09000 * 109.47031 * 299.99820 * 18 17 16 43 43 H 1.09006 * 109.46973 * 59.99999 * 19 18 17 44 44 H 1.08992 * 109.47269 * 300.00021 * 19 18 17 45 45 H 1.08008 * 125.01047 * 0.03789 * 21 20 19 46 46 H 1.07999 * 118.77156 * 179.97438 * 26 25 24 47 47 H 0.97001 * 119.99872 * 0.02562 * 29 28 27 48 48 H 0.97001 * 119.99608 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5959 1.9849 -0.8347 5 6 3.5404 1.4448 -0.1409 6 1 4.1650 1.3333 0.7330 7 6 4.1158 1.5891 -1.3856 8 7 5.4205 1.4962 -1.5216 9 14 3.0420 1.9168 -2.8785 10 1 2.7756 3.3737 -2.9865 11 1 3.7404 1.4493 -4.1028 12 1 1.7564 1.1880 -2.7332 13 7 1.6667 2.0924 1.2587 14 6 0.4509 2.6589 1.3899 15 8 -0.3344 2.6303 0.4661 16 6 0.0671 3.3280 2.6845 17 6 -1.3535 3.8843 2.5696 18 6 -1.7430 4.5642 3.8837 19 6 -3.1634 5.1209 3.7685 20 7 -3.5365 5.7714 5.0271 21 6 -4.2294 5.2032 6.0543 22 7 -4.3859 6.0658 7.0160 23 6 -3.8045 7.2391 6.6684 24 6 -3.2526 7.0643 5.3880 25 7 -2.6179 8.0810 4.8139 26 6 -2.5055 9.2374 5.4329 27 7 -3.0075 9.4491 6.6357 28 6 -3.6588 8.4917 7.2882 29 7 -4.1764 8.7214 8.5510 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5139 -0.8898 34 1 1.8933 -0.5138 0.8902 35 1 5.8253 1.5981 -2.3972 36 1 2.2947 2.1152 1.9977 37 1 0.7609 4.1427 2.8921 38 1 0.1077 2.6008 3.4954 39 1 -2.0472 3.0694 2.3623 40 1 -1.3946 4.6115 1.7586 41 1 -1.0494 5.3791 4.0907 42 1 -1.7019 3.8373 4.6949 43 1 -3.8573 4.3062 3.5614 44 1 -3.2040 5.8479 2.9574 45 1 -4.5945 4.1868 6.0681 46 1 -1.9832 10.0430 4.9385 47 1 -4.0661 9.5893 8.9698 48 1 -4.6501 8.0146 9.0168 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001611083708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:33:01 Heat of formation + Delta-G solvation = 19.214494 kcal Electronic energy + Delta-G solvation = -29132.605241 eV Core-core repulsion = 25028.769982 eV Total energy + Delta-G solvation = -4103.835258 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.186 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -43.49791 -40.73869 -40.26137 -37.36810 -36.84564 -36.32294 -34.37587 -34.15890 -33.07998 -32.90471 -30.37113 -30.22062 -29.21804 -26.01382 -25.19718 -24.68228 -24.30528 -22.67843 -21.68138 -21.60772 -21.11468 -19.56362 -19.36045 -19.12487 -17.76525 -17.58732 -17.36542 -17.13011 -16.97202 -16.84162 -16.00413 -15.90098 -15.68007 -15.28972 -15.12247 -14.90326 -14.78706 -14.67665 -14.35015 -13.80219 -13.72967 -13.55000 -13.46036 -13.16715 -12.98601 -12.86136 -12.54807 -12.51679 -12.34794 -12.23867 -12.20877 -11.87621 -11.66663 -11.55045 -11.40156 -11.19454 -10.91267 -10.84018 -10.56903 -10.27284 -10.09912 -9.63177 -8.92064 -8.39364 -6.44593 -0.10785 0.32605 1.28024 1.32549 1.34918 1.43089 1.75583 1.91617 2.26239 2.33071 2.57503 2.91007 3.02597 3.06238 3.18772 3.44635 3.79644 3.83673 3.91002 3.97278 4.16577 4.20640 4.32359 4.34759 4.44251 4.47201 4.54019 4.61146 4.67889 4.78239 4.82381 4.89560 4.97550 5.00959 5.13079 5.26852 5.29062 5.30687 5.41910 5.44485 5.45063 5.58440 5.72198 5.84304 5.97089 6.14922 6.18429 6.61102 6.65928 6.72568 7.00751 7.21911 7.32361 7.58591 8.75715 Molecular weight = 346.19amu Principal moments of inertia in cm(-1) A = 0.020350 B = 0.001785 C = 0.001714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.585861 B =15679.704814 C =16336.050392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.123 4.123 3 C 0.240 3.760 4 H 0.028 0.972 5 C -0.526 4.526 6 H 0.055 0.945 7 C 0.031 3.969 8 N -0.931 5.931 9 Si 0.926 3.074 10 H -0.276 1.276 11 H -0.279 1.279 12 H -0.255 1.255 13 N -0.709 5.709 14 C 0.496 3.504 15 O -0.588 6.588 16 C -0.132 4.132 17 C -0.090 4.090 18 C -0.119 4.119 19 C 0.112 3.888 20 N -0.468 5.468 21 C 0.262 3.738 22 N -0.490 5.490 23 C -0.131 4.131 24 C 0.275 3.725 25 N -0.577 5.577 26 C 0.353 3.647 27 N -0.605 5.605 28 C 0.492 3.508 29 N -0.804 5.804 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.031 0.969 33 H 0.046 0.954 34 H 0.061 0.939 35 H 0.269 0.731 36 H 0.403 0.597 37 H 0.099 0.901 38 H 0.116 0.884 39 H 0.077 0.923 40 H 0.054 0.946 41 H 0.054 0.946 42 H 0.086 0.914 43 H 0.133 0.867 44 H 0.084 0.916 45 H 0.267 0.733 46 H 0.230 0.770 47 H 0.418 0.582 48 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.114 9.716 19.987 31.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.163 4.163 3 C 0.136 3.864 4 H 0.046 0.954 5 C -0.564 4.564 6 H 0.073 0.927 7 C -0.169 4.169 8 N -0.570 5.570 9 Si 0.752 3.248 10 H -0.202 1.202 11 H -0.205 1.205 12 H -0.179 1.179 13 N -0.358 5.358 14 C 0.284 3.716 15 O -0.469 6.469 16 C -0.172 4.172 17 C -0.128 4.128 18 C -0.157 4.157 19 C -0.009 4.009 20 N -0.159 5.159 21 C -0.024 4.024 22 N -0.209 5.209 23 C -0.258 4.258 24 C 0.034 3.966 25 N -0.303 5.303 26 C 0.062 3.938 27 N -0.336 5.336 28 C 0.237 3.763 29 N -0.347 5.347 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.050 0.950 33 H 0.065 0.935 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.238 0.762 37 H 0.117 0.883 38 H 0.134 0.866 39 H 0.095 0.905 40 H 0.073 0.927 41 H 0.072 0.928 42 H 0.105 0.895 43 H 0.151 0.849 44 H 0.103 0.897 45 H 0.282 0.718 46 H 0.246 0.754 47 H 0.251 0.749 48 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -22.431 10.126 19.364 31.315 hybrid contribution 0.530 -0.174 -0.838 1.007 sum -21.900 9.952 18.526 30.362 Atomic orbital electron populations 1.21758 0.95554 1.00261 1.01331 1.21980 0.95257 0.97989 1.01039 1.18867 0.92961 0.90343 0.84232 0.95395 1.21258 0.90576 1.50185 0.94430 0.92726 1.25622 0.95761 0.94097 1.01463 1.69984 1.11249 1.50527 1.25209 0.86055 0.79963 0.79179 0.79652 1.20162 1.20465 1.17863 1.46413 1.15865 1.56398 1.17115 1.21379 0.81342 0.78135 0.90779 1.90635 1.51659 1.61228 1.43419 1.21680 0.99218 1.01815 0.94459 1.21105 0.94902 1.00315 0.96496 1.21808 0.95105 1.00393 0.98435 1.22112 0.98112 0.98758 0.81896 1.45454 1.44887 1.07454 1.18136 1.26343 0.93754 1.01021 0.81252 1.70203 1.22851 0.99423 1.28383 1.19930 1.11817 0.96396 0.97668 1.19148 0.97066 0.88261 0.92136 1.67327 1.23599 1.00386 1.38971 1.25058 0.90629 0.92145 0.85969 1.68107 1.20201 1.32333 1.12920 1.18065 0.86075 0.85367 0.86754 1.42166 1.59426 1.19359 1.13793 0.92525 0.92641 0.94962 0.93522 0.92021 0.92131 0.76175 0.88268 0.86575 0.90482 0.92675 0.92752 0.89523 0.84903 0.89729 0.71776 0.75437 0.74936 0.74366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.81 8.53 71.98 0.61 -4.20 16 2 C -0.12 -5.10 5.59 30.59 0.17 -4.93 16 3 C 0.24 10.98 1.89 44.25 0.08 11.06 16 4 H 0.03 1.42 4.73 -2.39 -0.01 1.41 16 5 C -0.53 -28.14 9.05 25.60 0.23 -27.91 16 6 H 0.05 3.11 8.06 -2.91 -0.02 3.09 16 7 C 0.03 1.73 5.47 84.66 0.46 2.19 16 8 N -0.93 -55.48 13.96 21.45 0.30 -55.18 16 9 Si 0.93 44.66 26.99 68.60 1.85 46.51 16 10 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 11 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 12 H -0.25 -11.95 6.82 99.48 0.68 -11.27 16 13 N -0.71 -26.25 5.03 -446.11 -2.24 -28.49 16 14 C 0.50 16.49 6.43 87.66 0.56 17.06 16 15 O -0.59 -23.60 13.12 -3.00 -0.04 -23.64 16 16 C -0.13 -2.81 5.70 29.85 0.17 -2.64 16 17 C -0.09 -1.66 4.50 30.59 0.14 -1.53 16 18 C -0.12 -1.66 5.54 30.59 0.17 -1.49 16 19 C 0.11 1.39 6.16 86.38 0.53 1.92 16 20 N -0.47 -7.50 2.79 -526.04 -1.47 -8.97 16 21 C 0.26 3.30 12.51 179.96 2.25 5.56 16 22 N -0.49 -9.01 11.28 -191.39 -2.16 -11.17 16 23 C -0.13 -2.83 7.17 39.69 0.28 -2.55 16 24 C 0.28 6.16 8.05 133.86 1.08 7.23 16 25 N -0.58 -13.42 10.47 -197.89 -2.07 -15.49 16 26 C 0.35 6.91 12.25 180.86 2.22 9.12 16 27 N -0.60 -12.24 10.45 -196.97 -2.06 -14.30 16 28 C 0.49 9.67 7.87 133.46 1.05 10.72 16 29 N -0.80 -9.59 9.05 -54.65 -0.49 -10.08 16 30 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.05 1.95 5.63 -2.39 -0.01 1.94 16 32 H 0.03 1.28 7.89 -2.39 -0.02 1.26 16 33 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.06 2.38 8.14 -2.38 -0.02 2.37 16 35 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 36 H 0.40 13.14 8.59 -92.71 -0.80 12.35 16 37 H 0.10 1.97 8.14 -2.38 -0.02 1.95 16 38 H 0.12 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.08 1.40 8.10 -2.39 -0.02 1.38 16 40 H 0.05 1.25 8.10 -2.38 -0.02 1.23 16 41 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 43 H 0.13 0.79 8.13 -2.38 -0.02 0.77 16 44 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 45 H 0.27 0.46 8.06 -2.91 -0.02 0.43 16 46 H 0.23 2.76 8.06 -2.91 -0.02 2.73 16 47 H 0.42 3.28 8.95 -92.71 -0.83 2.45 16 48 H 0.42 3.98 8.85 -92.71 -0.82 3.16 16 Total: -1.00 -77.89 397.47 0.18 -77.71 By element: Atomic # 1 Polarization: 24.92 SS G_CDS: -1.45 Total: 23.47 kcal Atomic # 6 Polarization: 9.61 SS G_CDS: 10.02 Total: 19.63 kcal Atomic # 7 Polarization: -133.48 SS G_CDS: -10.19 Total: -143.68 kcal Atomic # 8 Polarization: -23.60 SS G_CDS: -0.04 Total: -23.64 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 1.85 Total: 46.51 kcal Total: -77.89 0.18 -77.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001611083708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.926 kcal (2) G-P(sol) polarization free energy of solvation -77.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.712 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds