Wall clock time and date at job start Wed Apr 1 2020 05:05:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47351 * 2 1 4 4 C 1.50705 * 109.46939 * 119.99607 * 2 1 3 5 5 O 1.21281 * 119.99872 * 120.00142 * 4 2 1 6 6 N 1.34771 * 119.99903 * 300.00057 * 4 2 1 7 7 C 1.46500 * 120.00054 * 180.02562 * 6 4 2 8 8 H 1.09002 * 115.56639 * 350.69811 * 7 6 4 9 9 C 1.53029 * 117.50506 * 136.41356 * 7 6 4 10 10 C 1.52816 * 117.50333 * 205.00146 * 7 6 4 11 11 C 1.53184 * 117.71336 * 0.13015 * 10 7 6 12 12 C 1.53352 * 108.77090 * 201.11992 * 11 10 7 13 13 N 1.46837 * 108.81528 * 308.69443 * 12 11 10 14 14 C 1.36937 * 120.38408 * 236.91862 * 13 12 11 15 15 H 1.08001 * 119.99954 * 151.80197 * 14 13 12 16 16 C 1.38813 * 120.00203 * 331.80020 * 14 13 12 17 17 N 1.31619 * 120.00025 * 159.30478 * 16 14 13 18 18 Si 1.86806 * 119.99740 * 339.31404 * 16 14 13 19 19 H 1.48498 * 109.47024 * 94.25420 * 18 16 14 20 20 H 1.48496 * 109.46925 * 214.25417 * 18 16 14 21 21 H 1.48499 * 109.47057 * 334.25556 * 18 16 14 22 22 C 1.46850 * 119.23444 * 56.89826 * 13 12 11 23 23 C 1.53183 * 117.71716 * 144.89521 * 10 7 6 24 24 C 1.50698 * 109.47048 * 239.99385 * 2 1 3 25 25 C 1.38224 * 120.01649 * 299.99994 * 24 2 1 26 26 C 1.38219 * 120.02818 * 179.97438 * 25 24 2 27 27 C 1.38277 * 120.05009 * 0.03019 * 26 25 24 28 28 C 1.38171 * 120.02417 * 359.97438 * 27 26 25 29 29 C 1.38443 * 120.01164 * 119.72614 * 24 2 1 30 30 F 1.35097 * 120.02656 * 0.02562 * 29 24 2 31 31 H 1.08998 * 109.47351 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47231 * 300.00917 * 1 2 3 33 33 H 1.09007 * 109.46984 * 59.99991 * 1 2 3 34 34 H 0.96998 * 120.00101 * 359.97438 * 6 4 2 35 35 H 1.08998 * 117.50589 * 0.02562 * 9 7 6 36 36 H 1.09003 * 117.52961 * 214.93786 * 9 7 6 37 37 H 1.08995 * 109.59414 * 320.91018 * 11 10 7 38 38 H 1.09008 * 109.58624 * 81.33711 * 11 10 7 39 39 H 1.08996 * 109.58053 * 188.89696 * 12 11 10 40 40 H 1.09000 * 109.57779 * 68.49213 * 12 11 10 41 41 H 0.97001 * 119.99824 * 180.02562 * 17 16 14 42 42 H 1.08998 * 109.57999 * 183.29585 * 22 13 12 43 43 H 1.08996 * 109.69584 * 62.96028 * 22 13 12 44 44 H 1.08999 * 109.59117 * 278.65882 * 23 10 7 45 45 H 1.08998 * 109.58822 * 39.09404 * 23 10 7 46 46 H 1.08003 * 119.98038 * 359.95732 * 25 24 2 47 47 H 1.07990 * 119.97476 * 180.02562 * 26 25 24 48 48 H 1.07990 * 119.98437 * 179.97438 * 27 26 25 49 49 H 1.07998 * 120.01085 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2306 5 8 2.7296 -1.6964 1.1193 6 7 1.7067 -0.2498 2.4546 7 6 2.1954 -0.9400 3.6508 8 1 2.6802 -1.9003 3.4748 9 6 2.7314 -0.0770 4.7953 10 6 1.3839 -0.7845 4.9363 11 6 0.1189 0.0776 4.8803 12 6 -0.2316 0.5325 6.3023 13 7 -0.2597 -0.6427 7.1821 14 6 -1.3864 -0.9438 7.8998 15 1 -1.5988 -1.9685 8.1669 16 6 -2.2555 0.0681 8.2843 17 7 -3.5011 -0.2183 8.5984 18 14 -1.6571 1.8363 8.3555 19 1 -1.9706 2.5169 7.0734 20 1 -2.3358 2.5440 9.4706 21 1 -0.1891 1.8534 8.5789 22 6 0.9341 -1.4919 7.2830 23 6 1.3080 -1.9880 5.8810 24 6 2.0323 -0.7105 -1.2304 25 6 1.6986 -2.0339 -1.4493 26 6 2.1587 -2.6857 -2.5780 27 6 2.9538 -2.0150 -3.4891 28 6 3.2888 -0.6922 -3.2723 29 6 2.8235 -0.0364 -2.1448 30 9 3.1463 1.2585 -1.9344 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5140 0.8899 33 1 -0.3633 0.5139 -0.8900 34 1 1.1493 0.5391 2.5435 35 1 2.7200 1.0043 4.6583 36 1 3.5686 -0.4692 5.3726 37 1 0.2984 0.9496 4.2515 38 1 -0.7044 -0.5077 4.4706 39 1 -1.2105 1.0118 6.3016 40 1 0.5217 1.2362 6.6567 41 1 -4.1085 0.4888 8.8667 42 1 0.7223 -2.3447 7.9279 43 1 1.7605 -0.9157 7.6991 44 1 0.5488 -2.6845 5.5253 45 1 2.2767 -2.4866 5.9161 46 1 1.0782 -2.5588 -0.7379 47 1 1.8971 -3.7195 -2.7484 48 1 3.3131 -2.5254 -4.3703 49 1 3.9102 -0.1687 -3.9838 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016888198.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:05:53 Heat of formation + Delta-G solvation = -10.021080 kcal Electronic energy + Delta-G solvation = -30425.731828 eV Core-core repulsion = 26268.416107 eV Total energy + Delta-G solvation = -4157.315721 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.180 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.19396 -40.54457 -39.34416 -38.36933 -35.78102 -34.59815 -33.12808 -31.68105 -30.80868 -30.57710 -29.69886 -28.62587 -25.29489 -24.21001 -23.35560 -23.03661 -22.74893 -21.66677 -20.83633 -20.12634 -18.46970 -17.96379 -17.45926 -16.85979 -16.44760 -16.32854 -15.83417 -15.73231 -15.23888 -15.04816 -14.58477 -14.27290 -14.12404 -14.05690 -13.95732 -13.78657 -13.42283 -13.05834 -12.96207 -12.75794 -12.58251 -12.45060 -12.34243 -12.29968 -12.02145 -11.97950 -11.74610 -11.51451 -11.25255 -11.16816 -10.81021 -10.61680 -10.37856 -10.02812 -9.94293 -9.80099 -9.54148 -9.47211 -9.22538 -8.93749 -8.76965 -8.48156 -6.96386 -5.97079 -3.32796 0.84319 0.95186 2.45362 2.92926 3.27881 3.37565 3.46106 3.49158 3.95122 4.01458 4.09535 4.35756 4.50305 4.56158 4.69914 4.78249 4.80638 4.83996 4.91663 4.96103 4.99192 5.06984 5.11351 5.28615 5.32553 5.39918 5.44717 5.57345 5.70497 5.74253 5.77306 5.83245 5.85554 5.89977 5.95933 6.02709 6.06199 6.13287 6.14030 6.29349 6.33859 6.39871 6.47416 6.58571 6.59477 6.66423 6.68581 6.93492 7.38803 7.96222 8.09401 8.31819 8.93675 9.70592 10.08815 11.18967 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.020013 B = 0.002320 C = 0.002272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.733545 B =12063.592797 C =12319.267960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.074 4.074 3 H 0.108 0.892 4 C 0.523 3.477 5 O -0.533 6.533 6 N -0.694 5.694 7 C 0.075 3.925 8 H 0.133 0.867 9 C -0.185 4.185 10 C -0.101 4.101 11 C -0.098 4.098 12 C 0.132 3.868 13 N -0.604 5.604 14 C -0.260 4.260 15 H 0.085 0.915 16 C 0.023 3.977 17 N -0.908 5.908 18 Si 0.882 3.118 19 H -0.290 1.290 20 H -0.304 1.304 21 H -0.270 1.270 22 C 0.152 3.848 23 C -0.098 4.098 24 C -0.098 4.098 25 C -0.056 4.056 26 C -0.131 4.131 27 C -0.092 4.092 28 C -0.158 4.158 29 C 0.103 3.897 30 F -0.140 7.140 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.402 0.598 35 H 0.092 0.908 36 H 0.099 0.901 37 H 0.048 0.952 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.026 0.974 41 H 0.262 0.738 42 H 0.064 0.936 43 H 0.024 0.976 44 H 0.068 0.932 45 H 0.057 0.943 46 H 0.131 0.869 47 H 0.129 0.871 48 H 0.131 0.869 49 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.320 -0.193 -23.154 26.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.096 4.096 3 H 0.126 0.874 4 C 0.309 3.691 5 O -0.409 6.409 6 N -0.344 5.344 7 C -0.030 4.030 8 H 0.151 0.849 9 C -0.223 4.223 10 C -0.103 4.103 11 C -0.137 4.137 12 C 0.006 3.994 13 N -0.327 5.327 14 C -0.388 4.388 15 H 0.102 0.898 16 C -0.176 4.176 17 N -0.551 5.551 18 Si 0.713 3.287 19 H -0.218 1.218 20 H -0.232 1.232 21 H -0.195 1.195 22 C 0.026 3.974 23 C -0.137 4.137 24 C -0.099 4.099 25 C -0.074 4.074 26 C -0.149 4.149 27 C -0.110 4.110 28 C -0.176 4.176 29 C 0.083 3.917 30 F -0.118 7.118 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.237 0.763 35 H 0.111 0.889 36 H 0.117 0.883 37 H 0.066 0.934 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.044 0.956 41 H 0.072 0.928 42 H 0.083 0.917 43 H 0.042 0.958 44 H 0.086 0.914 45 H 0.076 0.924 46 H 0.149 0.851 47 H 0.147 0.853 48 H 0.149 0.851 49 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 12.666 -0.811 -23.142 26.394 hybrid contribution 0.122 1.834 0.180 1.847 sum 12.788 1.023 -22.962 26.303 Atomic orbital electron populations 1.21820 0.91204 1.03530 1.03363 1.20221 0.98309 1.00608 0.90424 0.87376 1.20308 0.80076 0.84583 0.84167 1.90705 1.37556 1.26094 1.86560 1.45378 1.52741 1.31570 1.04688 1.21850 1.03090 0.97880 0.80224 0.84889 1.23567 0.98151 0.98980 1.01632 1.21924 0.92528 0.99408 0.96392 1.21628 0.95378 0.97228 0.99467 1.21274 0.99664 0.90023 0.88435 1.44273 1.11507 1.28519 1.48408 1.18939 0.96950 0.94181 1.28725 0.89755 1.25307 0.95774 0.97761 0.98782 1.69841 1.03436 1.32881 1.48941 0.86942 0.79190 0.86367 0.76220 1.21759 1.23187 1.19510 1.20878 0.88895 0.94389 0.93218 1.21675 1.00539 0.94833 0.96698 1.19335 0.99946 0.95314 0.95338 1.20865 0.97678 0.92546 0.96331 1.21205 0.98699 1.00450 0.94530 1.21013 0.97125 0.93492 0.99348 1.21072 1.03047 0.96043 0.97482 1.17514 0.98933 0.78936 0.96267 1.91475 1.91153 1.34317 1.94870 0.91409 0.91152 0.91025 0.76268 0.88938 0.88254 0.93393 0.91010 0.90999 0.95626 0.92790 0.91703 0.95821 0.91356 0.92437 0.85139 0.85268 0.85102 0.84811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.14 8.90 37.16 0.33 -0.81 16 2 C -0.07 -0.74 2.89 -92.92 -0.27 -1.01 16 3 H 0.11 0.99 7.13 -51.93 -0.37 0.62 16 4 C 0.52 6.55 7.02 -10.99 -0.08 6.48 16 5 O -0.53 -8.42 14.67 5.56 0.08 -8.33 16 6 N -0.69 -8.20 5.24 -53.88 -0.28 -8.48 16 7 C 0.08 1.00 6.14 -68.01 -0.42 0.58 16 8 H 0.13 1.90 7.40 -51.93 -0.38 1.52 16 9 C -0.18 -2.40 9.86 -26.79 -0.26 -2.67 16 10 C -0.10 -1.50 1.94 -154.49 -0.30 -1.80 16 11 C -0.10 -1.60 5.37 -26.45 -0.14 -1.75 16 12 C 0.13 2.75 4.23 -3.68 -0.02 2.74 16 13 N -0.60 -13.93 2.71 -172.26 -0.47 -14.39 16 14 C -0.26 -7.12 10.00 -15.06 -0.15 -7.27 16 15 H 0.08 2.48 8.06 -52.49 -0.42 2.05 16 16 C 0.02 0.64 5.23 -17.43 -0.09 0.55 16 17 N -0.91 -27.51 13.97 55.49 0.78 -26.74 16 18 Si 0.88 22.00 24.40 -169.99 -4.15 17.85 16 19 H -0.29 -6.91 6.66 56.52 0.38 -6.54 16 20 H -0.30 -7.75 7.11 56.52 0.40 -7.35 16 21 H -0.27 -6.63 6.65 56.52 0.38 -6.26 16 22 C 0.15 2.91 6.52 -3.67 -0.02 2.88 16 23 C -0.10 -1.56 5.83 -26.45 -0.15 -1.71 16 24 C -0.10 -1.05 4.40 -104.55 -0.46 -1.51 16 25 C -0.06 -0.57 7.93 -39.59 -0.31 -0.88 16 26 C -0.13 -1.10 10.05 -39.57 -0.40 -1.49 16 27 C -0.09 -0.70 10.04 -39.59 -0.40 -1.10 16 28 C -0.16 -1.37 10.03 -39.52 -0.40 -1.76 16 29 C 0.10 1.08 7.25 -39.42 -0.29 0.80 16 30 F -0.14 -1.54 16.19 2.25 0.04 -1.50 16 31 H 0.07 0.56 7.39 -51.93 -0.38 0.18 16 32 H 0.07 0.52 7.56 -51.93 -0.39 0.12 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.40 4.05 6.54 -40.82 -0.27 3.79 16 35 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.05 0.65 6.75 -51.93 -0.35 0.30 16 38 H 0.07 1.25 8.14 -51.92 -0.42 0.83 16 39 H 0.07 1.66 4.31 -51.93 -0.22 1.43 16 40 H 0.03 0.53 7.27 -51.93 -0.38 0.16 16 41 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 42 H 0.06 1.24 7.92 -51.93 -0.41 0.83 16 43 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 45 H 0.06 0.78 8.10 -51.93 -0.42 0.36 16 46 H 0.13 1.30 7.52 -52.48 -0.39 0.90 16 47 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 48 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 49 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 LS Contribution 388.50 15.07 5.85 5.85 Total: -1.00 -32.54 388.50 -9.36 -41.90 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -7.39 Total: 3.58 kcal Atomic # 6 Polarization: -5.90 SS G_CDS: -3.82 Total: -9.73 kcal Atomic # 7 Polarization: -49.64 SS G_CDS: 0.03 Total: -49.62 kcal Atomic # 8 Polarization: -8.42 SS G_CDS: 0.08 Total: -8.33 kcal Atomic # 9 Polarization: -1.54 SS G_CDS: 0.04 Total: -1.50 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.15 Total: 17.85 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -32.54 -9.36 -41.90 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016888198.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.877 kcal (2) G-P(sol) polarization free energy of solvation -32.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds