Wall clock time and date at job start Wed Apr 1 2020 05:04:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08995 * 109.46927 * 2 1 4 4 C 1.50702 * 109.47236 * 239.99638 * 2 1 3 5 5 O 1.21273 * 119.99837 * 336.36741 * 4 2 1 6 6 N 1.34770 * 119.99766 * 156.36662 * 4 2 1 7 7 C 1.46893 * 120.46061 * 175.57421 * 6 4 2 8 8 C 1.53358 * 108.74445 * 124.38870 * 7 6 4 9 9 C 1.52557 * 109.12680 * 52.25850 * 8 7 6 10 10 C 1.52958 * 114.06095 * 75.54049 * 9 8 7 11 11 N 1.47165 * 87.85071 * 139.44191 * 10 9 8 12 12 C 1.36939 * 135.99937 * 153.08009 * 11 10 9 13 13 H 1.07998 * 119.99974 * 0.02562 * 12 11 10 14 14 C 1.38813 * 119.99887 * 179.97438 * 12 11 10 15 15 N 1.31622 * 119.99907 * 0.02562 * 14 12 11 16 16 Si 1.86794 * 120.00012 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47095 * 90.00373 * 16 14 12 18 18 H 1.48499 * 109.47327 * 210.00194 * 16 14 12 19 19 H 1.48496 * 109.47456 * 330.00498 * 16 14 12 20 20 C 1.47169 * 87.99808 * 333.33719 * 11 10 9 21 21 C 1.52557 * 113.43031 * 302.67256 * 9 8 7 22 22 C 1.46886 * 120.46586 * 355.59214 * 6 4 2 23 23 C 1.50700 * 109.46780 * 119.99895 * 2 1 3 24 24 C 1.38272 * 119.98511 * 239.99689 * 23 2 1 25 25 C 1.38218 * 120.05235 * 179.97438 * 24 23 2 26 26 C 1.38214 * 120.02736 * 0.02562 * 25 24 23 27 27 C 1.38442 * 119.97339 * 359.97438 * 26 25 24 28 28 F 1.35104 * 120.02501 * 180.02562 * 27 26 25 29 29 C 1.38170 * 119.99139 * 59.72655 * 23 2 1 30 30 H 1.09004 * 109.46891 * 184.91843 * 1 2 3 31 31 H 1.08994 * 109.46890 * 304.92217 * 1 2 3 32 32 H 1.09000 * 109.46661 * 64.92340 * 1 2 3 33 33 H 1.08997 * 109.59641 * 4.60635 * 7 6 4 34 34 H 1.09006 * 109.71293 * 244.23676 * 7 6 4 35 35 H 1.08993 * 109.52368 * 292.36204 * 8 7 6 36 36 H 1.08994 * 109.58563 * 172.18681 * 8 7 6 37 37 H 1.08997 * 113.48872 * 24.69721 * 10 9 8 38 38 H 1.08994 * 113.49165 * 254.18378 * 10 9 8 39 39 H 0.96996 * 119.99825 * 179.97438 * 15 14 12 40 40 H 1.08994 * 113.48936 * 141.41810 * 20 11 10 41 41 H 1.08999 * 113.48552 * 271.92125 * 20 11 10 42 42 H 1.09000 * 109.52471 * 177.21974 * 21 9 8 43 43 H 1.09001 * 109.52726 * 297.42164 * 21 9 8 44 44 H 1.08994 * 109.59023 * 355.38640 * 22 6 4 45 45 H 1.09001 * 109.58974 * 115.82649 * 22 6 4 46 46 H 1.08006 * 119.97439 * 359.97438 * 24 23 2 47 47 H 1.07999 * 119.98831 * 180.02562 * 25 24 23 48 48 H 1.08000 * 120.01605 * 180.02562 * 26 25 24 49 49 H 1.07994 * 120.01105 * 359.97438 * 29 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 1.3274 -1.5213 -1.7927 6 7 3.2652 -0.4447 -1.7059 7 6 3.8026 -1.1998 -2.8455 8 6 4.2119 -0.2103 -3.9433 9 6 5.1299 0.8503 -3.3433 10 6 6.5549 0.3629 -3.0764 11 7 7.0333 1.6638 -3.5709 12 6 8.1342 2.4516 -3.3649 13 1 8.9096 2.1291 -2.6859 14 6 8.2541 3.6643 -4.0297 15 7 7.3094 4.0571 -4.8576 16 14 9.7556 4.7393 -3.7482 17 1 10.8119 4.3808 -4.7285 18 1 9.3825 6.1661 -3.9221 19 1 10.2661 4.5256 -2.3702 20 6 5.8063 1.7496 -4.3790 21 6 4.5020 1.6062 -2.1764 22 6 4.0903 0.6037 -1.0915 23 6 2.0323 -0.7104 1.2305 24 6 2.8273 -0.0381 2.1405 25 6 3.2883 -0.6882 3.2698 26 6 2.9554 -2.0114 3.4905 27 6 2.1596 -2.6855 2.5801 28 9 1.8332 -3.9788 2.7951 29 6 1.6937 -2.0316 1.4518 30 1 -0.3633 -1.0239 0.0881 31 1 -0.3633 0.5883 0.8426 32 1 -0.3633 0.4356 -0.9308 33 1 3.0384 -1.8758 -3.2292 34 1 4.6729 -1.7744 -2.5284 35 1 3.3222 0.2676 -4.3532 36 1 4.7384 -0.7414 -4.7362 37 1 6.8518 -0.4767 -3.7050 38 1 6.7662 0.1953 -2.0203 39 1 7.3930 4.9047 -5.3219 40 1 5.3849 2.7538 -4.4236 41 1 5.8998 1.2868 -5.3613 42 1 5.2263 2.3100 -1.7663 43 1 3.6226 2.1481 -2.5243 44 1 3.5156 1.1158 -0.3198 45 1 4.9810 0.1563 -0.6504 46 1 3.0882 0.9957 1.9687 47 1 3.9088 -0.1620 3.9801 48 1 3.3154 -2.5190 4.3732 49 1 1.0689 -2.5550 0.7434 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035854815.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:04:33 Heat of formation + Delta-G solvation = 0.701833 kcal Electronic energy + Delta-G solvation = -31113.434818 eV Core-core repulsion = 26956.584077 eV Total energy + Delta-G solvation = -4156.850740 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.180 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.11080 -40.80780 -39.50858 -38.56161 -35.84208 -34.40227 -32.52306 -31.17510 -30.76590 -30.39381 -29.73014 -27.05194 -25.29884 -24.78851 -23.64837 -23.21713 -22.87841 -22.12736 -20.98199 -19.32332 -17.97370 -17.66689 -16.93195 -16.70708 -16.45163 -16.20247 -15.87507 -15.70643 -15.30052 -14.89450 -14.65436 -14.20407 -14.03411 -13.88953 -13.83256 -13.71566 -13.52253 -13.12741 -12.82851 -12.59097 -12.39198 -12.28982 -12.17487 -12.09979 -12.08213 -11.67610 -11.41392 -11.26704 -11.09724 -11.00759 -10.89052 -10.84417 -10.42325 -10.28544 -9.80800 -9.74166 -9.61817 -9.22235 -9.20031 -8.93286 -8.82132 -8.43009 -6.88500 -5.78719 -3.10650 0.81837 0.90939 2.58244 3.00595 3.29396 3.36457 3.41479 3.43416 3.92973 4.31691 4.37272 4.43517 4.50237 4.73377 4.79530 4.82852 4.92253 5.02672 5.06401 5.12676 5.15325 5.33369 5.36813 5.44972 5.48455 5.56517 5.62342 5.64450 5.67305 5.75087 5.82493 5.83346 5.86746 5.95039 6.00347 6.00436 6.12965 6.18449 6.26635 6.34209 6.48228 6.57005 6.58520 6.62241 6.78418 6.81442 7.20852 7.34071 7.46217 7.54898 7.95974 8.16737 9.02054 9.68663 10.63828 11.38650 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.015116 B = 0.002724 C = 0.002526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.876667 B =10277.910787 C =11079.943796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.076 4.076 3 H 0.107 0.893 4 C 0.522 3.478 5 O -0.545 6.545 6 N -0.600 5.600 7 C 0.114 3.886 8 C -0.113 4.113 9 C -0.115 4.115 10 C 0.127 3.873 11 N -0.608 5.608 12 C -0.216 4.216 13 H 0.079 0.921 14 C -0.008 4.008 15 N -0.919 5.919 16 Si 0.910 3.090 17 H -0.289 1.289 18 H -0.290 1.290 19 H -0.281 1.281 20 C 0.167 3.833 21 C -0.095 4.095 22 C 0.106 3.894 23 C -0.045 4.045 24 C -0.121 4.121 25 C -0.087 4.087 26 C -0.155 4.155 27 C 0.099 3.901 28 F -0.140 7.140 29 C -0.141 4.141 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.087 0.913 34 H 0.066 0.934 35 H 0.063 0.937 36 H 0.074 0.926 37 H 0.030 0.970 38 H 0.036 0.964 39 H 0.253 0.747 40 H 0.070 0.930 41 H 0.023 0.977 42 H 0.089 0.911 43 H 0.061 0.939 44 H 0.080 0.920 45 H 0.071 0.929 46 H 0.133 0.867 47 H 0.135 0.865 48 H 0.134 0.866 49 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.660 -9.044 14.720 21.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.097 4.097 3 H 0.125 0.875 4 C 0.310 3.690 5 O -0.423 6.423 6 N -0.332 5.332 7 C -0.008 4.008 8 C -0.152 4.152 9 C -0.116 4.116 10 C 0.001 3.999 11 N -0.333 5.333 12 C -0.344 4.344 13 H 0.097 0.903 14 C -0.204 4.204 15 N -0.566 5.566 16 Si 0.741 3.259 17 H -0.217 1.217 18 H -0.217 1.217 19 H -0.206 1.206 20 C 0.041 3.959 21 C -0.133 4.133 22 C -0.016 4.016 23 C -0.045 4.045 24 C -0.139 4.139 25 C -0.105 4.105 26 C -0.174 4.174 27 C 0.080 3.920 28 F -0.119 7.119 29 C -0.160 4.160 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.105 0.895 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.092 0.908 37 H 0.047 0.953 38 H 0.054 0.946 39 H 0.063 0.937 40 H 0.088 0.912 41 H 0.041 0.959 42 H 0.108 0.892 43 H 0.080 0.920 44 H 0.098 0.902 45 H 0.090 0.910 46 H 0.151 0.849 47 H 0.153 0.847 48 H 0.152 0.848 49 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -12.796 -9.218 14.381 21.343 hybrid contribution 1.076 0.372 -0.059 1.140 sum -11.720 -8.845 14.321 20.511 Atomic orbital electron populations 1.21666 0.91324 1.03314 1.02469 1.20408 0.98487 1.00223 0.90554 0.87512 1.20314 0.81121 0.82629 0.84961 1.90664 1.55779 1.35763 1.60052 1.48095 1.15376 1.36883 1.32835 1.21624 0.98810 0.94146 0.86192 1.21721 0.99675 0.96701 0.97113 1.22071 0.93989 0.97249 0.98322 1.22392 0.90394 0.90089 0.97027 1.45578 1.21370 1.16378 1.50017 1.18917 0.96276 0.97774 1.21417 0.90283 1.24772 0.98465 0.98028 0.99157 1.69828 1.33254 1.22217 1.31336 0.86149 0.82182 0.79894 0.77713 1.21684 1.21653 1.20626 1.22031 0.85020 0.97577 0.91274 1.21430 1.00577 0.96855 0.94444 1.21942 0.94855 0.88850 0.95968 1.19288 0.96974 0.93198 0.95061 1.21185 0.97821 1.00635 0.94258 1.21003 0.98633 0.93570 0.97336 1.21184 1.00253 0.95862 1.00098 1.17673 0.99109 0.79030 0.96172 1.91507 1.91118 1.34484 1.94773 1.21080 1.02319 0.95241 0.97366 0.91414 0.91692 0.91537 0.89469 0.91537 0.91800 0.90790 0.95250 0.94594 0.93694 0.91205 0.95892 0.89237 0.92031 0.90204 0.91045 0.84874 0.84675 0.84769 0.84328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.21 8.51 37.16 0.32 -0.89 16 2 C -0.08 -0.75 2.11 -92.92 -0.20 -0.95 16 3 H 0.11 0.89 5.88 -51.93 -0.31 0.59 16 4 C 0.52 6.90 6.44 -10.99 -0.07 6.83 16 5 O -0.54 -8.78 15.57 5.56 0.09 -8.69 16 6 N -0.60 -7.83 2.94 -172.63 -0.51 -8.34 16 7 C 0.11 1.55 6.35 -3.64 -0.02 1.52 16 8 C -0.11 -1.66 5.30 -26.77 -0.14 -1.80 16 9 C -0.11 -1.98 0.84 -155.02 -0.13 -2.11 16 10 C 0.13 2.47 7.63 -8.20 -0.06 2.41 16 11 N -0.61 -14.93 3.55 -184.68 -0.66 -15.59 16 12 C -0.22 -5.89 10.74 -15.06 -0.16 -6.05 16 13 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 14 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 15 N -0.92 -26.70 11.52 55.49 0.64 -26.06 16 16 Si 0.91 21.66 29.55 -169.99 -5.02 16.63 16 17 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 18 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 19 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 20 C 0.17 3.76 6.54 -8.21 -0.05 3.70 16 21 C -0.09 -1.46 5.27 -26.78 -0.14 -1.60 16 22 C 0.11 1.29 6.21 -3.65 -0.02 1.27 16 23 C -0.04 -0.43 4.75 -104.63 -0.50 -0.93 16 24 C -0.12 -0.98 9.32 -39.58 -0.37 -1.35 16 25 C -0.09 -0.67 10.04 -39.60 -0.40 -1.06 16 26 C -0.16 -1.34 10.03 -39.51 -0.40 -1.74 16 27 C 0.10 1.05 7.30 -39.42 -0.29 0.77 16 28 F -0.14 -1.62 17.27 2.25 0.04 -1.58 16 29 C -0.14 -1.53 8.74 -39.52 -0.35 -1.88 16 30 H 0.07 0.68 7.10 -51.93 -0.37 0.31 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.09 1.22 6.97 -51.93 -0.36 0.86 16 34 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.07 1.06 8.09 -51.93 -0.42 0.64 16 37 H 0.03 0.57 8.06 -51.93 -0.42 0.15 16 38 H 0.04 0.66 7.53 -51.93 -0.39 0.27 16 39 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 40 H 0.07 1.76 7.11 -51.93 -0.37 1.39 16 41 H 0.02 0.54 8.09 -51.93 -0.42 0.12 16 42 H 0.09 1.59 7.95 -51.93 -0.41 1.17 16 43 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 44 H 0.08 0.77 4.78 -51.93 -0.25 0.52 16 45 H 0.07 0.88 7.60 -51.93 -0.39 0.49 16 46 H 0.13 0.83 7.72 -52.48 -0.41 0.42 16 47 H 0.14 0.71 8.06 -52.49 -0.42 0.28 16 48 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 49 H 0.14 1.61 7.53 -52.49 -0.40 1.21 16 LS Contribution 390.73 15.07 5.89 5.89 Total: -1.00 -31.87 390.73 -10.03 -41.90 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: -7.42 Total: 0.00 kcal Atomic # 6 Polarization: -1.09 SS G_CDS: -3.08 Total: -4.16 kcal Atomic # 7 Polarization: -49.46 SS G_CDS: -0.52 Total: -49.98 kcal Atomic # 8 Polarization: -8.78 SS G_CDS: 0.09 Total: -8.69 kcal Atomic # 9 Polarization: -1.62 SS G_CDS: 0.04 Total: -1.58 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -31.87 -10.03 -41.90 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035854815.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.602 kcal (2) G-P(sol) polarization free energy of solvation -31.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.901 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds