Wall clock time and date at job start Wed Apr 1 2020 05:04:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08995 * 109.46927 * 2 1 4 4 C 1.50702 * 109.47236 * 239.99638 * 2 1 3 5 5 O 1.21273 * 119.99837 * 336.36741 * 4 2 1 6 6 N 1.34770 * 119.99766 * 156.36662 * 4 2 1 7 7 C 1.46893 * 120.46061 * 175.57421 * 6 4 2 8 8 C 1.53358 * 108.74445 * 124.38870 * 7 6 4 9 9 C 1.52557 * 109.12680 * 52.25850 * 8 7 6 10 10 C 1.52958 * 114.06095 * 75.54049 * 9 8 7 11 11 N 1.47165 * 87.85071 * 139.44191 * 10 9 8 12 12 C 1.36939 * 135.99937 * 153.08009 * 11 10 9 13 13 H 1.07998 * 119.99974 * 0.02562 * 12 11 10 14 14 C 1.38813 * 119.99887 * 179.97438 * 12 11 10 15 15 N 1.31622 * 119.99907 * 0.02562 * 14 12 11 16 16 Si 1.86794 * 120.00012 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47095 * 90.00373 * 16 14 12 18 18 H 1.48499 * 109.47327 * 210.00194 * 16 14 12 19 19 H 1.48496 * 109.47456 * 330.00498 * 16 14 12 20 20 C 1.47169 * 87.99808 * 333.33719 * 11 10 9 21 21 C 1.52557 * 113.43031 * 302.67256 * 9 8 7 22 22 C 1.46886 * 120.46586 * 355.59214 * 6 4 2 23 23 C 1.50700 * 109.46780 * 119.99895 * 2 1 3 24 24 C 1.38272 * 119.98511 * 239.99689 * 23 2 1 25 25 C 1.38218 * 120.05235 * 179.97438 * 24 23 2 26 26 C 1.38214 * 120.02736 * 0.02562 * 25 24 23 27 27 C 1.38442 * 119.97339 * 359.97438 * 26 25 24 28 28 F 1.35104 * 120.02501 * 180.02562 * 27 26 25 29 29 C 1.38170 * 119.99139 * 59.72655 * 23 2 1 30 30 H 1.09004 * 109.46891 * 184.91843 * 1 2 3 31 31 H 1.08994 * 109.46890 * 304.92217 * 1 2 3 32 32 H 1.09000 * 109.46661 * 64.92340 * 1 2 3 33 33 H 1.08997 * 109.59641 * 4.60635 * 7 6 4 34 34 H 1.09006 * 109.71293 * 244.23676 * 7 6 4 35 35 H 1.08993 * 109.52368 * 292.36204 * 8 7 6 36 36 H 1.08994 * 109.58563 * 172.18681 * 8 7 6 37 37 H 1.08997 * 113.48872 * 24.69721 * 10 9 8 38 38 H 1.08994 * 113.49165 * 254.18378 * 10 9 8 39 39 H 0.96996 * 119.99825 * 179.97438 * 15 14 12 40 40 H 1.08994 * 113.48936 * 141.41810 * 20 11 10 41 41 H 1.08999 * 113.48552 * 271.92125 * 20 11 10 42 42 H 1.09000 * 109.52471 * 177.21974 * 21 9 8 43 43 H 1.09001 * 109.52726 * 297.42164 * 21 9 8 44 44 H 1.08994 * 109.59023 * 355.38640 * 22 6 4 45 45 H 1.09001 * 109.58974 * 115.82649 * 22 6 4 46 46 H 1.08006 * 119.97439 * 359.97438 * 24 23 2 47 47 H 1.07999 * 119.98831 * 180.02562 * 25 24 23 48 48 H 1.08000 * 120.01605 * 180.02562 * 26 25 24 49 49 H 1.07994 * 120.01105 * 359.97438 * 29 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 1.3274 -1.5213 -1.7927 6 7 3.2652 -0.4447 -1.7059 7 6 3.8026 -1.1998 -2.8455 8 6 4.2119 -0.2103 -3.9433 9 6 5.1299 0.8503 -3.3433 10 6 6.5549 0.3629 -3.0764 11 7 7.0333 1.6638 -3.5709 12 6 8.1342 2.4516 -3.3649 13 1 8.9096 2.1291 -2.6859 14 6 8.2541 3.6643 -4.0297 15 7 7.3094 4.0571 -4.8576 16 14 9.7556 4.7393 -3.7482 17 1 10.8119 4.3808 -4.7285 18 1 9.3825 6.1661 -3.9221 19 1 10.2661 4.5256 -2.3702 20 6 5.8063 1.7496 -4.3790 21 6 4.5020 1.6062 -2.1764 22 6 4.0903 0.6037 -1.0915 23 6 2.0323 -0.7104 1.2305 24 6 2.8273 -0.0381 2.1405 25 6 3.2883 -0.6882 3.2698 26 6 2.9554 -2.0114 3.4905 27 6 2.1596 -2.6855 2.5801 28 9 1.8332 -3.9788 2.7951 29 6 1.6937 -2.0316 1.4518 30 1 -0.3633 -1.0239 0.0881 31 1 -0.3633 0.5883 0.8426 32 1 -0.3633 0.4356 -0.9308 33 1 3.0384 -1.8758 -3.2292 34 1 4.6729 -1.7744 -2.5284 35 1 3.3222 0.2676 -4.3532 36 1 4.7384 -0.7414 -4.7362 37 1 6.8518 -0.4767 -3.7050 38 1 6.7662 0.1953 -2.0203 39 1 7.3930 4.9047 -5.3219 40 1 5.3849 2.7538 -4.4236 41 1 5.8998 1.2868 -5.3613 42 1 5.2263 2.3100 -1.7663 43 1 3.6226 2.1481 -2.5243 44 1 3.5156 1.1158 -0.3198 45 1 4.9810 0.1563 -0.6504 46 1 3.0882 0.9957 1.9687 47 1 3.9088 -0.1620 3.9801 48 1 3.3154 -2.5190 4.3732 49 1 1.0689 -2.5550 0.7434 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035854815.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:04:31 Heat of formation + Delta-G solvation = -15.843684 kcal Electronic energy + Delta-G solvation = -31114.152285 eV Core-core repulsion = 26956.584077 eV Total energy + Delta-G solvation = -4157.568208 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.180 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -49.91520 -41.87245 -40.70239 -39.55800 -37.13498 -35.21546 -34.38204 -32.35118 -31.84450 -31.49610 -30.42752 -28.78319 -26.65818 -26.10909 -24.87741 -24.31657 -23.67784 -23.27373 -22.29195 -20.42032 -19.05676 -18.66633 -18.44193 -18.07704 -17.12660 -17.10819 -16.84593 -16.73997 -16.58199 -16.28312 -16.09047 -15.63221 -15.11483 -15.03288 -14.87712 -14.71994 -14.46533 -14.17391 -14.12569 -13.80708 -13.58568 -13.44462 -13.19413 -12.97553 -12.91142 -12.88440 -12.81802 -12.73850 -12.58169 -12.23379 -12.15365 -12.08757 -11.94931 -11.63468 -11.59682 -11.12805 -10.90491 -10.82168 -10.75165 -9.91448 -9.63899 -9.58113 -8.87033 -7.87105 -5.19674 0.14215 0.23122 1.47438 1.48920 1.57503 1.58501 2.01505 2.49706 2.61045 3.21408 3.34334 3.47006 3.50949 3.59115 3.65439 3.76431 3.87122 4.05891 4.10740 4.15106 4.20239 4.20700 4.32705 4.36186 4.39447 4.46134 4.63416 4.69690 4.75323 4.81533 4.83019 4.87630 4.91663 4.91781 4.97735 5.08928 5.10872 5.16143 5.17679 5.24561 5.25483 5.30070 5.37135 5.38290 5.47925 5.55323 5.59717 5.76882 5.92969 5.96762 6.43437 6.94355 7.14629 7.64152 8.66279 9.30385 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.015116 B = 0.002724 C = 0.002526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.876667 B =10277.910787 C =11079.943796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.069 4.069 3 H 0.131 0.869 4 C 0.519 3.481 5 O -0.579 6.579 6 N -0.602 5.602 7 C 0.119 3.881 8 C -0.105 4.105 9 C -0.086 4.086 10 C 0.130 3.870 11 N -0.635 5.635 12 C -0.223 4.223 13 H 0.085 0.915 14 C -0.067 4.067 15 N -0.953 5.953 16 Si 0.976 3.024 17 H -0.292 1.292 18 H -0.295 1.295 19 H -0.264 1.264 20 C 0.161 3.839 21 C -0.091 4.091 22 C 0.116 3.884 23 C -0.052 4.052 24 C -0.115 4.115 25 C -0.082 4.082 26 C -0.154 4.154 27 C 0.075 3.925 28 F -0.154 7.154 29 C -0.156 4.156 30 H 0.051 0.949 31 H 0.087 0.913 32 H 0.059 0.941 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.062 0.938 36 H 0.077 0.923 37 H 0.036 0.964 38 H 0.053 0.947 39 H 0.246 0.754 40 H 0.036 0.964 41 H 0.007 0.993 42 H 0.067 0.933 43 H 0.063 0.937 44 H 0.113 0.887 45 H 0.078 0.922 46 H 0.161 0.839 47 H 0.167 0.833 48 H 0.151 0.849 49 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.141 -8.692 17.432 22.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.090 4.090 3 H 0.149 0.851 4 C 0.308 3.692 5 O -0.459 6.459 6 N -0.333 5.333 7 C -0.004 4.004 8 C -0.144 4.144 9 C -0.088 4.088 10 C 0.005 3.995 11 N -0.361 5.361 12 C -0.352 4.352 13 H 0.103 0.897 14 C -0.260 4.260 15 N -0.602 5.602 16 Si 0.804 3.196 17 H -0.219 1.219 18 H -0.222 1.222 19 H -0.189 1.189 20 C 0.035 3.965 21 C -0.129 4.129 22 C -0.006 4.006 23 C -0.052 4.052 24 C -0.133 4.133 25 C -0.100 4.100 26 C -0.172 4.172 27 C 0.056 3.944 28 F -0.133 7.133 29 C -0.175 4.175 30 H 0.070 0.930 31 H 0.106 0.894 32 H 0.079 0.921 33 H 0.101 0.899 34 H 0.095 0.905 35 H 0.080 0.920 36 H 0.096 0.904 37 H 0.054 0.946 38 H 0.071 0.929 39 H 0.055 0.945 40 H 0.054 0.946 41 H 0.024 0.976 42 H 0.085 0.915 43 H 0.082 0.918 44 H 0.131 0.869 45 H 0.096 0.904 46 H 0.179 0.821 47 H 0.184 0.816 48 H 0.169 0.831 49 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -12.276 -8.897 17.122 22.869 hybrid contribution 0.909 0.211 -0.917 1.308 sum -11.367 -8.686 16.205 21.616 Atomic orbital electron populations 1.21666 0.91104 1.02754 1.03127 1.20435 0.98728 1.00865 0.88984 0.85096 1.20923 0.80583 0.82161 0.85518 1.90652 1.56624 1.37325 1.61295 1.48168 1.15577 1.36899 1.32658 1.21532 0.99056 0.93726 0.86052 1.21637 0.98917 0.96177 0.97630 1.21864 0.93710 0.96221 0.96981 1.22527 0.91067 0.88178 0.97771 1.45907 1.21182 1.18374 1.50622 1.19318 0.96932 0.98133 1.20773 0.89737 1.25579 1.01259 0.99585 0.99546 1.70026 1.35156 1.22341 1.32720 0.85118 0.78736 0.77590 0.78149 1.21917 1.22208 1.18887 1.22011 0.85594 0.96834 0.92043 1.21366 0.99851 0.97151 0.94563 1.21938 0.95585 0.87880 0.95171 1.19283 0.97807 0.92709 0.95427 1.21525 0.96417 1.01739 0.93619 1.21395 0.98058 0.92995 0.97526 1.21473 0.99263 0.96486 1.00023 1.17949 1.00539 0.78845 0.97077 1.91466 1.91440 1.35447 1.94904 1.21030 1.02911 0.96090 0.97457 0.92973 0.89381 0.92144 0.89914 0.90535 0.91969 0.90446 0.94588 0.92922 0.94469 0.94601 0.97558 0.91461 0.91793 0.86893 0.90353 0.82141 0.81600 0.83078 0.86311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.19 8.51 71.98 0.61 -1.58 16 2 C -0.07 -1.21 2.11 -12.28 -0.03 -1.23 16 3 H 0.13 1.62 5.88 -2.39 -0.01 1.60 16 4 C 0.52 12.87 6.44 87.66 0.56 13.43 16 5 O -0.58 -18.48 15.57 -3.01 -0.05 -18.53 16 6 N -0.60 -14.35 2.94 -818.49 -2.41 -16.75 16 7 C 0.12 3.02 6.35 86.42 0.55 3.57 16 8 C -0.10 -2.96 5.30 30.57 0.16 -2.80 16 9 C -0.09 -2.91 0.84 -52.51 -0.04 -2.96 16 10 C 0.13 4.86 7.63 83.32 0.64 5.50 16 11 N -0.64 -31.30 3.55 -738.19 -2.62 -33.92 16 12 C -0.22 -12.15 10.74 84.03 0.90 -11.24 16 13 H 0.08 4.37 7.83 -2.91 -0.02 4.35 16 14 C -0.07 -3.73 5.50 84.86 0.47 -3.26 16 15 N -0.95 -56.87 11.52 21.65 0.25 -56.62 16 16 Si 0.98 44.73 29.55 68.60 2.03 46.76 16 17 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 18 H -0.30 -13.67 7.11 99.48 0.71 -12.97 16 19 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 20 C 0.16 7.44 6.54 83.31 0.55 7.98 16 21 C -0.09 -2.64 5.27 30.56 0.16 -2.48 16 22 C 0.12 2.44 6.21 86.42 0.54 2.98 16 23 C -0.05 -0.87 4.75 -19.87 -0.09 -0.96 16 24 C -0.12 -1.38 9.32 22.27 0.21 -1.17 16 25 C -0.08 -0.90 10.04 22.26 0.22 -0.68 16 26 C -0.15 -2.25 10.03 22.31 0.22 -2.03 16 27 C 0.07 1.52 7.30 22.38 0.16 1.68 16 28 F -0.15 -3.59 17.27 44.97 0.78 -2.81 16 29 C -0.16 -3.27 8.74 22.31 0.20 -3.08 16 30 H 0.05 1.05 7.10 -2.39 -0.02 1.03 16 31 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.08 2.23 6.97 -2.39 -0.02 2.22 16 34 H 0.08 1.81 8.14 -2.38 -0.02 1.79 16 35 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.08 2.15 8.09 -2.39 -0.02 2.13 16 37 H 0.04 1.33 8.06 -2.39 -0.02 1.31 16 38 H 0.05 1.81 7.53 -2.39 -0.02 1.79 16 39 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 40 H 0.04 1.88 7.11 -2.39 -0.02 1.86 16 41 H 0.01 0.32 8.09 -2.39 -0.02 0.30 16 42 H 0.07 2.30 7.95 -2.39 -0.02 2.28 16 43 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 44 H 0.11 1.65 4.78 -2.39 -0.01 1.63 16 45 H 0.08 1.62 7.60 -2.39 -0.02 1.60 16 46 H 0.16 1.04 7.72 -2.91 -0.02 1.02 16 47 H 0.17 0.83 8.06 -2.91 -0.02 0.80 16 48 H 0.15 1.62 8.06 -2.91 -0.02 1.60 16 49 H 0.12 2.89 7.53 -2.91 -0.02 2.87 16 Total: -1.00 -71.82 390.73 4.91 -66.91 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: 0.95 Total: 13.30 kcal Atomic # 6 Polarization: -4.32 SS G_CDS: 5.98 Total: 1.67 kcal Atomic # 7 Polarization: -102.52 SS G_CDS: -4.78 Total: -107.30 kcal Atomic # 8 Polarization: -18.48 SS G_CDS: -0.05 Total: -18.53 kcal Atomic # 9 Polarization: -3.59 SS G_CDS: 0.78 Total: -2.81 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -71.82 4.91 -66.91 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035854815.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.063 kcal (2) G-P(sol) polarization free energy of solvation -71.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds