Wall clock time and date at job start Wed Apr 1 2020 04:53:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.51202 * 2 1 4 4 C 1.53287 * 109.51452 * 120.09770 * 2 1 3 5 5 N 1.47165 * 108.49430 * 172.96160 * 4 2 1 6 6 C 1.34774 * 121.05565 * 128.83064 * 5 4 2 7 7 O 1.21284 * 119.99960 * 179.97438 * 6 5 4 8 8 C 1.50706 * 120.00265 * 359.97438 * 6 5 4 9 9 C 1.52998 * 109.47240 * 180.02562 * 8 6 5 10 10 C 1.53005 * 109.46901 * 179.97438 * 9 8 6 11 11 C 1.52990 * 109.46914 * 179.97438 * 10 9 8 12 12 F 1.39902 * 109.46751 * 299.99920 * 10 9 8 13 13 F 1.39900 * 109.47103 * 59.99511 * 10 9 8 14 14 C 1.47290 * 117.88772 * 308.80454 * 5 4 2 15 15 C 1.52513 * 108.46135 * 49.33086 * 14 5 4 16 16 C 1.54516 * 110.04315 * 187.27374 * 15 14 5 17 17 C 1.55021 * 101.56718 * 206.94697 * 16 15 14 18 18 N 1.47489 * 104.89973 * 36.35951 * 17 16 15 19 19 C 1.36938 * 125.66238 * 155.94697 * 18 17 16 20 20 H 1.07998 * 120.00189 * 353.70853 * 19 18 17 21 21 C 1.38815 * 119.99493 * 173.70473 * 19 18 17 22 22 N 1.31622 * 119.99884 * 6.72678 * 21 19 18 23 23 Si 1.86798 * 119.99696 * 186.72777 * 21 19 18 24 24 H 1.48494 * 109.47472 * 94.98843 * 23 21 19 25 25 H 1.48509 * 109.46937 * 214.98830 * 23 21 19 26 26 H 1.48501 * 109.47088 * 334.98093 * 23 21 19 27 27 C 1.47186 * 108.66780 * 335.97960 * 18 17 16 28 28 O 1.42058 * 111.14045 * 309.79562 * 15 14 5 29 29 H 1.09006 * 109.47093 * 299.89551 * 1 2 3 30 30 H 1.08996 * 109.47142 * 59.89815 * 1 2 3 31 31 H 1.08999 * 109.46919 * 179.89986 * 1 2 3 32 32 H 1.09011 * 109.63220 * 53.26461 * 4 2 1 33 33 H 1.09001 * 109.80379 * 292.76594 * 4 2 1 34 34 H 1.09002 * 109.46733 * 300.00295 * 8 6 5 35 35 H 1.08994 * 109.46969 * 59.99573 * 8 6 5 36 36 H 1.08995 * 109.46701 * 299.99261 * 9 8 6 37 37 H 1.08999 * 109.47162 * 60.00072 * 9 8 6 38 38 H 1.09007 * 109.47456 * 59.99956 * 11 10 9 39 39 H 1.09007 * 109.47029 * 179.97438 * 11 10 9 40 40 H 1.09002 * 109.47424 * 299.99906 * 11 10 9 41 41 H 1.08996 * 109.64263 * 289.63788 * 14 5 4 42 42 H 1.09005 * 109.80693 * 169.12379 * 14 5 4 43 43 H 1.08994 * 111.01676 * 88.86186 * 16 15 14 44 44 H 1.09006 * 111.01653 * 325.02565 * 16 15 14 45 45 H 1.09005 * 110.35318 * 155.21590 * 17 16 15 46 46 H 1.08997 * 110.35563 * 277.50251 * 17 16 15 47 47 H 0.97001 * 119.99319 * 179.97438 * 22 21 19 48 48 H 1.09004 * 109.90419 * 120.87475 * 27 18 17 49 49 H 1.08997 * 109.91067 * 241.95019 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0421 -0.7245 1.2500 5 7 3.5036 -0.8611 1.1446 6 6 4.3124 -0.4732 2.1505 7 8 5.5144 -0.5950 2.0434 8 6 3.7234 0.1117 3.4083 9 6 4.8493 0.4664 4.3816 10 6 4.2513 1.0609 5.6584 11 6 5.3771 1.4149 6.6319 12 9 3.5284 2.2157 5.3408 13 9 3.3979 0.1253 6.2531 14 6 4.0542 -1.4357 -0.0948 15 6 3.4243 -0.7156 -1.2824 16 6 3.8357 -1.4084 -2.6008 17 6 3.7427 -0.2358 -3.6105 18 7 4.2024 0.9479 -2.8603 19 6 4.7298 2.0861 -3.4096 20 1 4.9319 2.1305 -4.4696 21 6 5.0044 3.1826 -2.6040 22 7 4.8838 3.0857 -1.2969 23 14 5.5452 4.7959 -3.3750 24 1 4.3637 5.6758 -3.5619 25 1 6.5257 5.4663 -2.4837 26 1 6.1763 4.5279 -4.6923 27 6 4.0010 0.7023 -1.4231 28 8 2.0090 -0.6767 -1.1661 29 1 -0.3633 0.5122 0.8910 30 1 -0.3633 0.5154 -0.8890 31 1 -0.3633 -1.0277 -0.0018 32 1 1.5856 -1.7124 1.3135 33 1 1.7914 -0.1474 2.1401 34 1 3.1602 1.0117 3.1613 35 1 3.0585 -0.6173 3.8712 36 1 5.4127 -0.4334 4.6287 37 1 5.5139 1.1956 3.9184 38 1 6.0424 2.1437 6.1687 39 1 4.9511 1.8388 7.5413 40 1 5.9400 0.5149 6.8793 41 1 3.8169 -2.4984 -0.1429 42 1 5.1356 -1.3005 -0.1159 43 1 3.1363 -2.2034 -2.8595 44 1 4.8544 -1.7916 -2.5397 45 1 4.3936 -0.4191 -4.4655 46 1 2.7126 -0.0996 -3.9395 47 1 5.0761 3.8519 -0.7340 48 1 4.9540 0.7684 -0.8981 49 1 3.3019 1.4328 -1.0161 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001131668607.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:21 Heat of formation + Delta-G solvation = -154.399676 kcal Electronic energy + Delta-G solvation = -33020.870352 eV Core-core repulsion = 28426.524680 eV Total energy + Delta-G solvation = -4594.345671 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.186 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.09161 -47.06016 -40.44312 -38.68423 -36.30742 -34.48418 -34.26801 -33.04174 -31.47516 -30.90792 -29.24739 -28.06682 -26.44576 -26.14238 -24.80478 -23.36828 -21.72611 -21.60827 -20.32789 -19.50465 -18.61208 -17.76842 -17.46502 -16.85188 -16.61223 -16.34443 -16.00069 -15.74302 -15.54687 -14.89097 -14.40534 -14.16848 -14.07242 -13.87372 -13.56836 -13.46460 -13.40232 -13.29547 -13.23053 -12.82053 -12.56802 -12.49996 -12.35097 -12.29224 -12.20768 -11.99424 -11.71587 -11.54222 -11.45803 -11.30912 -11.00074 -10.91933 -10.87587 -10.77403 -10.53508 -10.38477 -10.14537 -9.99771 -9.68489 -9.53962 -9.27968 -8.59769 -8.17608 -6.80003 -5.70339 -3.02452 2.78809 3.01971 3.41501 3.46574 3.48710 3.63456 3.96539 3.98458 4.14988 4.27944 4.51612 4.67684 4.83800 4.90682 4.93061 5.05414 5.19136 5.20762 5.29134 5.31903 5.36882 5.42233 5.50622 5.52226 5.55624 5.58133 5.64903 5.72455 5.77630 5.79761 5.85846 5.93628 6.01343 6.17315 6.18270 6.25207 6.33816 6.51232 6.56140 6.67910 6.90927 7.30646 7.52569 7.56179 7.79249 7.87679 8.25748 8.32358 9.22253 9.83865 10.50579 11.41681 Molecular weight = 346.19amu Principal moments of inertia in cm(-1) A = 0.009904 B = 0.003843 C = 0.003185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2826.589839 B = 7283.603358 C = 8789.791316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.068 3.932 3 H 0.077 0.923 4 C 0.080 3.920 5 N -0.609 5.609 6 C 0.524 3.476 7 O -0.537 6.537 8 C -0.144 4.144 9 C -0.144 4.144 10 C 0.285 3.715 11 C -0.194 4.194 12 F -0.199 7.199 13 F -0.204 7.204 14 C 0.104 3.896 15 C 0.074 3.926 16 C -0.117 4.117 17 C 0.137 3.863 18 N -0.605 5.605 19 C -0.228 4.228 20 H 0.079 0.921 21 C -0.007 4.007 22 N -0.920 5.920 23 Si 0.910 3.090 24 H -0.289 1.289 25 H -0.292 1.292 26 H -0.281 1.281 27 C 0.169 3.831 28 O -0.360 6.360 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.074 0.926 33 H 0.090 0.910 34 H 0.103 0.897 35 H 0.097 0.903 36 H 0.101 0.899 37 H 0.106 0.894 38 H 0.091 0.909 39 H 0.080 0.920 40 H 0.089 0.911 41 H 0.066 0.934 42 H 0.102 0.898 43 H 0.072 0.928 44 H 0.079 0.921 45 H 0.040 0.960 46 H 0.024 0.976 47 H 0.251 0.749 48 H 0.050 0.950 49 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.699 -8.966 13.515 17.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.009 3.991 3 H 0.095 0.905 4 C -0.043 4.043 5 N -0.342 5.342 6 C 0.312 3.688 7 O -0.414 6.414 8 C -0.184 4.184 9 C -0.182 4.182 10 C 0.249 3.751 11 C -0.251 4.251 12 F -0.181 7.181 13 F -0.185 7.185 14 C -0.019 4.019 15 C 0.033 3.967 16 C -0.155 4.155 17 C 0.011 3.989 18 N -0.332 5.332 19 C -0.356 4.356 20 H 0.097 0.903 21 C -0.203 4.203 22 N -0.567 5.567 23 Si 0.740 3.260 24 H -0.217 1.217 25 H -0.218 1.218 26 H -0.206 1.206 27 C 0.045 3.955 28 O -0.280 6.280 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.092 0.908 33 H 0.108 0.892 34 H 0.121 0.879 35 H 0.116 0.884 36 H 0.119 0.881 37 H 0.124 0.876 38 H 0.110 0.890 39 H 0.099 0.901 40 H 0.108 0.892 41 H 0.084 0.916 42 H 0.120 0.880 43 H 0.091 0.909 44 H 0.097 0.903 45 H 0.058 0.942 46 H 0.042 0.958 47 H 0.061 0.939 48 H 0.068 0.932 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -5.119 -8.897 13.405 16.884 hybrid contribution 0.146 1.098 -0.121 1.115 sum -4.973 -7.798 13.285 16.187 Atomic orbital electron populations 1.21683 0.92724 1.02532 1.02735 1.22444 0.94862 0.96998 0.84752 0.90545 1.22498 0.80251 1.01590 0.99974 1.48060 1.06643 1.62767 1.16743 1.20321 0.86690 0.77467 0.84309 1.90700 1.14499 1.55185 1.81013 1.21632 0.99420 1.03237 0.94094 1.22392 0.98854 1.04342 0.92625 1.21193 0.84401 0.75638 0.93853 1.22752 0.97847 1.04874 0.99651 1.93027 1.80369 1.50794 1.93871 1.92994 1.73778 1.66254 1.85481 1.22120 1.00813 0.96352 0.82625 1.22694 0.80971 0.99153 0.93888 1.22670 1.00743 0.98112 0.94000 1.21565 0.97085 0.86528 0.93735 1.44471 1.73123 1.14373 1.01191 1.19072 1.34569 0.89010 0.92924 0.90346 1.24807 1.01897 0.98067 0.95554 1.69962 1.55043 1.29519 1.02196 0.86129 0.77811 0.83954 0.78089 1.21675 1.21815 1.20620 1.21574 0.99112 0.88704 0.86159 1.87757 1.20720 1.76971 1.42523 0.91207 0.91339 0.92040 0.90803 0.89210 0.87914 0.88428 0.88087 0.87597 0.88989 0.90137 0.89214 0.91620 0.88015 0.90894 0.90272 0.94201 0.95822 0.93851 0.93181 0.93027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 9.57 37.16 0.36 -1.30 16 2 C 0.07 1.05 3.17 -26.58 -0.08 0.96 16 3 H 0.08 1.43 6.25 -51.93 -0.32 1.10 16 4 C 0.08 1.04 5.82 -3.53 -0.02 1.02 16 5 N -0.61 -9.70 2.95 -172.62 -0.51 -10.21 16 6 C 0.52 8.60 7.71 -10.98 -0.08 8.52 16 7 O -0.54 -10.65 15.47 5.55 0.09 -10.56 16 8 C -0.14 -1.80 3.83 -27.88 -0.11 -1.90 16 9 C -0.14 -1.65 4.09 -26.73 -0.11 -1.76 16 10 C 0.29 2.98 2.11 -26.73 -0.06 2.92 16 11 C -0.19 -1.48 9.38 37.15 0.35 -1.14 16 12 F -0.20 -2.49 16.54 2.25 0.04 -2.45 16 13 F -0.20 -2.28 16.54 2.25 0.04 -2.24 16 14 C 0.10 1.79 5.19 -3.86 -0.02 1.77 16 15 C 0.07 1.42 0.81 -89.70 -0.07 1.34 16 16 C -0.12 -2.08 6.21 -24.87 -0.15 -2.24 16 17 C 0.14 2.93 7.24 -2.43 -0.02 2.91 16 18 N -0.60 -15.86 3.40 -170.20 -0.58 -16.44 16 19 C -0.23 -6.48 10.27 -15.06 -0.15 -6.63 16 20 H 0.08 2.15 7.84 -52.49 -0.41 1.74 16 21 C -0.01 -0.20 5.48 -17.43 -0.10 -0.30 16 22 N -0.92 -27.39 10.36 55.49 0.58 -26.81 16 23 Si 0.91 22.50 29.56 -169.99 -5.02 17.48 16 24 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 25 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 26 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 27 C 0.17 4.17 4.48 -3.30 -0.01 4.15 16 28 O -0.36 -6.57 9.90 -35.23 -0.35 -6.92 16 29 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.07 0.83 8.14 -51.92 -0.42 0.41 16 33 H 0.09 0.95 6.05 -51.93 -0.31 0.64 16 34 H 0.10 1.29 7.33 -51.93 -0.38 0.90 16 35 H 0.10 1.01 7.66 -51.93 -0.40 0.61 16 36 H 0.10 1.08 8.10 -51.93 -0.42 0.66 16 37 H 0.11 1.33 8.10 -51.93 -0.42 0.91 16 38 H 0.09 0.65 8.14 -51.92 -0.42 0.23 16 39 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 42 H 0.10 1.97 6.84 -51.93 -0.36 1.61 16 43 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 44 H 0.08 1.34 8.01 -51.93 -0.42 0.92 16 45 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 46 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 47 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 48 H 0.05 1.41 7.01 -51.93 -0.36 1.05 16 49 H 0.05 1.41 5.28 -51.93 -0.27 1.14 16 LS Contribution 387.76 15.07 5.84 5.84 Total: -1.00 -34.06 387.76 -8.03 -42.10 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -7.86 Total: 1.88 kcal Atomic # 6 Polarization: 8.62 SS G_CDS: -0.29 Total: 8.34 kcal Atomic # 7 Polarization: -52.95 SS G_CDS: -0.51 Total: -53.46 kcal Atomic # 8 Polarization: -17.22 SS G_CDS: -0.26 Total: -17.48 kcal Atomic # 9 Polarization: -4.77 SS G_CDS: 0.07 Total: -4.69 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -34.06 -8.03 -42.10 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131668607.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.302 kcal (2) G-P(sol) polarization free energy of solvation -34.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds