Wall clock time and date at job start Wed Apr 1 2020 05:11:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.46911 * 2 1 4 4 N 1.46507 * 109.46978 * 119.98714 * 2 1 3 5 5 C 1.36931 * 120.00382 * 275.00437 * 4 2 1 6 6 H 1.07995 * 120.00133 * 0.02562 * 5 4 2 7 7 C 1.38813 * 119.99810 * 179.97438 * 5 4 2 8 8 N 1.31626 * 119.99761 * 179.97438 * 7 5 4 9 9 Si 1.86798 * 120.00221 * 0.02562 * 7 5 4 10 10 H 1.48496 * 109.47188 * 89.99742 * 9 7 5 11 11 H 1.48497 * 109.46834 * 209.99692 * 9 7 5 12 12 H 1.48502 * 109.46830 * 329.99649 * 9 7 5 13 13 C 1.52996 * 109.47780 * 239.99041 * 2 1 3 14 14 C 1.53041 * 109.45680 * 60.00241 * 13 2 1 15 15 C 1.53195 * 109.31298 * 181.37250 * 14 13 2 16 16 N 1.46920 * 108.77489 * 305.36258 * 15 14 13 17 17 C 1.34776 * 120.63155 * 233.58206 * 16 15 14 18 18 O 1.21282 * 119.99795 * 0.02562 * 17 16 15 19 19 C 1.50700 * 120.00064 * 180.02562 * 17 16 15 20 20 H 1.09006 * 112.82873 * 311.11647 * 19 17 16 21 21 C 1.53516 * 113.58789 * 180.02562 * 19 17 16 22 22 C 1.51622 * 87.33961 * 245.28804 * 21 19 17 23 23 C 1.38386 * 147.49603 * 180.02562 * 22 21 19 24 24 C 1.38057 * 120.35749 * 180.02562 * 23 22 21 25 25 C 1.38474 * 119.93115 * 359.97438 * 24 23 22 26 26 F 1.35095 * 120.04917 * 179.97438 * 25 24 23 27 27 C 1.38801 * 119.97664 * 0.03857 * 25 24 23 28 28 C 1.38337 * 120.14304 * 359.92976 * 27 25 24 29 29 C 1.46930 * 118.73706 * 53.85881 * 16 15 14 30 30 C 1.53045 * 109.45014 * 180.02562 * 13 2 1 31 31 H 1.09003 * 109.46911 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47776 * 300.00572 * 1 2 3 33 33 H 1.09006 * 109.46676 * 60.01083 * 1 2 3 34 34 H 0.97005 * 119.99108 * 95.00355 * 4 2 1 35 35 H 0.97000 * 120.00100 * 180.02562 * 8 7 5 36 36 H 1.08998 * 109.46142 * 300.03229 * 13 2 1 37 37 H 1.09001 * 109.50211 * 61.41580 * 14 13 2 38 38 H 1.09003 * 109.49689 * 301.32044 * 14 13 2 39 39 H 1.08996 * 109.58537 * 185.57366 * 15 14 13 40 40 H 1.08995 * 109.58502 * 65.15421 * 15 14 13 41 41 H 1.09002 * 113.58691 * 359.92286 * 21 19 17 42 42 H 1.08995 * 113.58742 * 130.65751 * 21 19 17 43 43 H 1.08004 * 119.82433 * 0.02562 * 23 22 21 44 44 H 1.08006 * 120.03445 * 179.97438 * 24 23 22 45 45 H 1.08000 * 120.00462 * 180.02562 * 27 25 24 46 46 H 1.09002 * 109.58509 * 65.92813 * 29 16 15 47 47 H 1.09001 * 109.58731 * 186.35160 * 29 16 15 48 48 H 1.08998 * 109.49682 * 298.57495 * 30 13 2 49 49 H 1.08997 * 109.49289 * 58.64202 * 30 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6904 1.1964 5 6 2.1490 -0.0071 2.3758 6 1 1.8917 1.0406 2.4243 7 6 2.6112 -0.6615 3.5095 8 7 2.7373 -0.0046 4.6431 9 14 3.0555 -2.4739 3.4258 10 1 4.4883 -2.6161 3.0626 11 1 2.8154 -3.1039 4.7489 12 1 2.2159 -3.1425 2.3995 13 6 2.0401 -0.7214 -1.2490 14 6 1.5299 0.0001 -2.4986 15 6 2.0141 -0.7445 -3.7468 16 7 3.4758 -0.8770 -3.6811 17 6 4.2499 -0.4584 -4.7019 18 8 3.7408 0.0337 -5.6866 19 6 5.7478 -0.6016 -4.6198 20 1 6.1573 -0.2297 -3.6805 21 6 6.4840 -0.0776 -5.8608 22 6 6.9169 -1.5073 -6.1206 23 6 7.6173 -2.3861 -6.9281 24 6 7.6568 -3.7323 -6.6244 25 6 6.9932 -4.2081 -5.5060 26 9 7.0298 -5.5250 -5.2069 27 6 6.2888 -3.3315 -4.6924 28 6 6.2491 -1.9823 -4.9954 29 6 4.0774 -1.4803 -2.4840 30 6 3.5706 -0.7216 -1.2481 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 0.8898 33 1 -0.3633 0.5137 -0.8901 34 1 2.2490 -1.6316 1.1529 35 1 3.0606 -0.4617 5.4352 36 1 1.6763 -1.7489 -1.2490 37 1 1.9136 1.0203 -2.5118 38 1 0.4402 0.0209 -2.4872 39 1 1.7379 -0.1815 -4.6382 40 1 1.5586 -1.7342 -3.7815 41 1 5.8188 0.3226 -6.6259 42 1 7.3109 0.5928 -5.6267 43 1 8.1359 -2.0170 -7.8006 44 1 8.2047 -4.4137 -7.2585 45 1 5.7714 -3.7020 -3.8198 46 1 3.7868 -2.5287 -2.4178 47 1 5.1631 -1.4028 -2.5421 48 1 3.9345 0.3055 -1.2734 49 1 3.9337 -1.2141 -0.3461 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753278952.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:11:31 Heat of formation + Delta-G solvation = -7.992289 kcal Electronic energy + Delta-G solvation = -30539.005973 eV Core-core repulsion = 26381.778227 eV Total energy + Delta-G solvation = -4157.227746 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.180 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.20997 -41.41012 -39.67483 -38.03143 -35.66556 -35.29471 -33.00012 -31.47050 -31.09706 -30.97122 -28.96160 -27.86200 -26.00509 -25.11746 -23.64567 -22.91833 -22.58652 -21.51105 -20.62721 -19.87636 -19.05332 -18.02015 -17.65652 -17.26005 -16.91043 -16.15515 -15.84996 -15.54974 -15.43111 -14.90388 -14.57776 -14.44144 -14.31982 -14.03772 -13.92340 -13.80718 -13.41717 -13.16222 -13.01942 -12.78375 -12.55309 -12.47659 -12.37744 -12.16146 -12.06334 -11.74074 -11.63211 -11.42471 -11.18274 -11.04056 -10.96982 -10.84754 -10.44871 -10.39923 -10.16405 -10.09399 -9.88790 -9.59734 -9.33822 -8.96553 -8.81857 -8.73652 -7.28878 -5.79228 -3.14370 0.67424 0.79780 2.30547 2.77702 3.14759 3.33292 3.35537 3.42411 3.50331 3.81323 4.00926 4.13156 4.28102 4.54603 4.55868 4.69364 4.83118 4.85288 4.90993 4.93421 5.07914 5.11154 5.22679 5.23143 5.35905 5.37783 5.41952 5.52799 5.55067 5.60372 5.64355 5.70522 5.71626 5.77783 5.79832 5.87465 5.97205 6.07367 6.16071 6.20176 6.28107 6.32530 6.37526 6.46435 6.49911 6.57208 6.82018 7.01011 7.21790 7.94402 7.97649 8.40093 9.18737 9.91233 10.11327 11.39401 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.012067 B = 0.002818 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2319.763494 B = 9934.938819 C =11319.909295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.183 3.817 3 H 0.054 0.946 4 N -0.747 5.747 5 C -0.239 4.239 6 H 0.089 0.911 7 C 0.003 3.997 8 N -0.935 5.935 9 Si 0.882 3.118 10 H -0.284 1.284 11 H -0.292 1.292 12 H -0.278 1.278 13 C -0.094 4.094 14 C -0.127 4.127 15 C 0.112 3.888 16 N -0.602 5.602 17 C 0.533 3.467 18 O -0.539 6.539 19 C -0.067 4.067 20 H 0.128 0.872 21 C -0.054 4.054 22 C -0.126 4.126 23 C -0.069 4.069 24 C -0.144 4.144 25 C 0.098 3.902 26 F -0.136 7.136 27 C -0.120 4.120 28 C -0.095 4.095 29 C 0.102 3.898 30 C -0.125 4.125 31 H 0.044 0.956 32 H 0.056 0.944 33 H 0.042 0.958 34 H 0.359 0.641 35 H 0.259 0.741 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.080 0.920 39 H 0.090 0.910 40 H 0.066 0.934 41 H 0.112 0.888 42 H 0.101 0.899 43 H 0.132 0.868 44 H 0.140 0.860 45 H 0.134 0.866 46 H 0.070 0.930 47 H 0.082 0.918 48 H 0.069 0.931 49 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.170 -4.453 -24.393 26.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.074 3.926 3 H 0.072 0.928 4 N -0.390 5.390 5 C -0.369 4.369 6 H 0.107 0.893 7 C -0.192 4.192 8 N -0.583 5.583 9 Si 0.713 3.287 10 H -0.211 1.211 11 H -0.218 1.218 12 H -0.204 1.204 13 C -0.113 4.113 14 C -0.166 4.166 15 C -0.010 4.010 16 N -0.334 5.334 17 C 0.320 3.680 18 O -0.417 6.417 19 C -0.088 4.088 20 H 0.145 0.855 21 C -0.091 4.091 22 C -0.126 4.126 23 C -0.087 4.087 24 C -0.163 4.163 25 C 0.078 3.922 26 F -0.115 7.115 27 C -0.139 4.139 28 C -0.096 4.096 29 C -0.020 4.020 30 C -0.163 4.163 31 H 0.063 0.937 32 H 0.075 0.925 33 H 0.060 0.940 34 H 0.192 0.808 35 H 0.069 0.931 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.098 0.902 39 H 0.109 0.891 40 H 0.084 0.916 41 H 0.130 0.870 42 H 0.119 0.881 43 H 0.150 0.850 44 H 0.158 0.842 45 H 0.152 0.848 46 H 0.088 0.912 47 H 0.101 0.899 48 H 0.088 0.912 49 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 7.898 -4.079 -24.701 26.252 hybrid contribution 0.307 -1.838 0.508 1.931 sum 8.205 -5.917 -24.193 26.223 Atomic orbital electron populations 1.22467 0.99029 1.00775 1.00426 1.20185 0.91789 0.95619 0.85005 0.92782 1.42791 1.79802 1.09251 1.07176 1.19057 1.36638 0.95456 0.85747 0.89313 1.24665 1.01637 0.97337 0.95571 1.69700 1.52792 1.35543 1.00292 0.86588 0.78367 0.86936 0.76855 1.21108 1.21838 1.20376 1.21433 0.94891 0.99967 0.95036 1.22008 1.01347 0.99737 0.93467 1.21674 0.78743 1.00874 0.99728 1.48107 1.07329 1.60308 1.17652 1.19908 0.87951 0.77579 0.82526 1.90677 1.74724 1.44936 1.31355 1.21601 0.93310 0.91768 1.02152 0.85478 1.21828 0.99114 0.92126 0.95999 1.22338 0.97394 0.97370 0.95487 1.20109 0.98240 0.91134 0.99203 1.21020 1.01774 0.96267 0.97255 1.17452 1.00549 0.77897 0.96256 1.91519 1.95004 1.31911 1.93054 1.20347 1.01021 0.91595 1.00914 1.21557 0.98295 0.92428 0.97313 1.22040 0.98155 0.97311 0.84510 1.21993 0.96160 1.01330 0.96790 0.93727 0.92515 0.93954 0.80789 0.93098 0.91463 0.91353 0.90157 0.89121 0.91587 0.86973 0.88051 0.85046 0.84194 0.84792 0.91210 0.89945 0.91243 0.89545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.75 9.14 37.16 0.34 -2.41 16 2 C 0.18 3.21 2.47 -67.93 -0.17 3.04 16 3 H 0.05 1.02 8.08 -51.93 -0.42 0.60 16 4 N -0.75 -16.41 4.21 -53.43 -0.22 -16.63 16 5 C -0.24 -6.44 10.41 -15.06 -0.16 -6.60 16 6 H 0.09 2.60 8.06 -52.49 -0.42 2.18 16 7 C 0.00 0.10 5.50 -17.43 -0.10 0.00 16 8 N -0.94 -28.84 13.97 55.49 0.78 -28.06 16 9 Si 0.88 21.39 27.74 -169.99 -4.71 16.68 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 12 H -0.28 -6.32 6.52 56.52 0.37 -5.95 16 13 C -0.09 -1.28 1.79 -90.58 -0.16 -1.44 16 14 C -0.13 -1.47 5.04 -26.61 -0.13 -1.61 16 15 C 0.11 1.25 6.43 -3.71 -0.02 1.23 16 16 N -0.60 -6.83 2.97 -172.51 -0.51 -7.34 16 17 C 0.53 6.42 7.24 -10.99 -0.08 6.34 16 18 O -0.54 -8.03 15.12 5.56 0.08 -7.95 16 19 C -0.07 -0.63 2.94 -92.22 -0.27 -0.90 16 20 H 0.13 0.97 7.22 -51.93 -0.37 0.60 16 21 C -0.05 -0.44 7.76 -27.18 -0.21 -0.65 16 22 C -0.13 -1.14 7.49 -103.77 -0.78 -1.91 16 23 C -0.07 -0.54 10.02 -39.59 -0.40 -0.94 16 24 C -0.14 -1.18 10.02 -39.56 -0.40 -1.58 16 25 C 0.10 0.97 7.31 -39.29 -0.29 0.68 16 26 F -0.14 -1.46 17.27 2.25 0.04 -1.42 16 27 C -0.12 -1.19 10.04 -39.34 -0.39 -1.59 16 28 C -0.10 -0.93 6.79 -103.80 -0.70 -1.64 16 29 C 0.10 1.08 6.35 -3.49 -0.02 1.05 16 30 C -0.12 -1.63 5.24 -26.39 -0.14 -1.76 16 31 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 33 H 0.04 0.57 6.40 -51.93 -0.33 0.24 16 34 H 0.36 7.77 5.44 -40.82 -0.22 7.55 16 35 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 36 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.08 0.87 6.36 -51.93 -0.33 0.54 16 39 H 0.09 1.08 7.00 -51.93 -0.36 0.71 16 40 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.11 1.04 7.04 -51.93 -0.37 0.67 16 42 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.13 0.71 8.06 -52.48 -0.42 0.28 16 44 H 0.14 0.84 8.06 -52.48 -0.42 0.41 16 45 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 46 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 47 H 0.08 0.74 5.67 -51.93 -0.29 0.45 16 48 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 49 H 0.09 1.29 7.40 -51.93 -0.38 0.90 16 LS Contribution 390.28 15.07 5.88 5.88 Total: -1.00 -32.40 390.28 -10.08 -42.48 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: -7.33 Total: 7.06 kcal Atomic # 6 Polarization: -6.61 SS G_CDS: -4.08 Total: -10.69 kcal Atomic # 7 Polarization: -52.07 SS G_CDS: 0.04 Total: -52.04 kcal Atomic # 8 Polarization: -8.03 SS G_CDS: 0.08 Total: -7.95 kcal Atomic # 9 Polarization: -1.46 SS G_CDS: 0.04 Total: -1.42 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.71 Total: 16.68 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -32.40 -10.08 -42.48 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753278952.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.488 kcal (2) G-P(sol) polarization free energy of solvation -32.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds