Wall clock time and date at job start Wed Apr 1 2020 03:56:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 109.47494 * 2 1 4 4 N 1.46497 * 109.46945 * 119.99886 * 2 1 3 5 5 C 1.36935 * 120.00296 * 274.99639 * 4 2 1 6 6 H 1.08005 * 119.99659 * 359.97438 * 5 4 2 7 7 C 1.38815 * 120.00582 * 180.02562 * 5 4 2 8 8 N 1.31614 * 120.00296 * 180.02562 * 7 5 4 9 9 Si 1.86802 * 119.99501 * 359.97438 * 7 5 4 10 10 H 1.48508 * 109.47041 * 270.00454 * 9 7 5 11 11 H 1.48495 * 109.47463 * 30.00444 * 9 7 5 12 12 H 1.48500 * 109.47052 * 150.00529 * 9 7 5 13 13 C 1.53002 * 109.46956 * 239.99843 * 2 1 3 14 14 H 1.08999 * 109.51454 * 185.10663 * 13 2 1 15 15 C 1.53293 * 109.51533 * 65.00184 * 13 2 1 16 16 N 1.47156 * 108.38360 * 187.77514 * 15 13 2 17 17 C 1.34778 * 120.98037 * 230.50821 * 16 15 13 18 18 O 1.21283 * 119.99947 * 354.78853 * 17 16 15 19 19 C 1.50694 * 119.99945 * 174.78257 * 17 16 15 20 20 C 1.53004 * 110.43237 * 64.09862 * 19 17 16 21 21 F 1.39898 * 109.47014 * 65.58044 * 20 19 17 22 22 F 1.39905 * 109.47096 * 185.57449 * 20 19 17 23 23 C 1.54882 * 110.48880 * 301.56073 * 19 17 16 24 24 C 1.55243 * 102.58698 * 279.18370 * 23 19 17 25 25 C 1.54263 * 104.23042 * 322.08898 * 24 23 19 26 26 C 1.53868 * 106.60151 * 23.60398 * 25 24 23 27 27 C 1.47150 * 118.03521 * 50.53541 * 16 15 13 28 28 C 1.53292 * 108.38748 * 309.46193 * 27 16 15 29 29 O 1.42962 * 109.51090 * 305.25302 * 13 2 1 30 30 H 1.09000 * 109.47022 * 300.00202 * 1 2 3 31 31 H 1.09000 * 109.47270 * 60.00065 * 1 2 3 32 32 H 1.08998 * 109.47494 * 179.97438 * 1 2 3 33 33 H 0.97010 * 120.00232 * 95.00274 * 4 2 1 34 34 H 0.96997 * 120.00365 * 179.97438 * 8 7 5 35 35 H 1.09003 * 109.67596 * 307.49961 * 15 13 2 36 36 H 1.08996 * 109.68292 * 68.01389 * 15 13 2 37 37 H 1.08993 * 109.47444 * 305.57767 * 20 19 17 38 38 H 1.08995 * 110.75880 * 37.57256 * 23 19 17 39 39 H 1.08996 * 110.76109 * 160.95058 * 23 19 17 40 40 H 1.08992 * 110.46957 * 203.39178 * 24 23 19 41 41 H 1.08998 * 110.57993 * 80.82970 * 24 23 19 42 42 H 1.09009 * 110.02562 * 264.32192 * 25 24 23 43 43 H 1.09003 * 110.03510 * 142.89754 * 25 24 23 44 44 H 1.08998 * 110.03476 * 240.71980 * 26 25 24 45 45 H 1.08999 * 110.07378 * 119.30933 * 26 25 24 46 46 H 1.09005 * 109.68342 * 69.18949 * 27 16 15 47 47 H 1.08997 * 109.67915 * 189.69734 * 27 16 15 48 48 H 1.08998 * 109.51631 * 172.22598 * 28 27 16 49 49 H 1.08998 * 109.51471 * 292.33290 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0182 -0.6906 1.1962 5 6 2.1491 -0.0075 2.3757 6 1 1.8927 1.0406 2.4241 7 6 2.6122 -0.6617 3.5091 8 7 2.7375 -0.0052 4.6429 9 14 3.0564 -2.4742 3.4252 10 1 1.8591 -3.2925 3.7451 11 1 3.5309 -2.8048 2.0575 12 1 4.1321 -2.7661 4.4064 13 6 2.0399 -0.7213 -1.2493 14 1 3.1260 -0.8016 -1.2054 15 6 1.6349 0.0696 -2.4984 16 7 1.9697 -0.7337 -3.6851 17 6 2.6763 -0.2052 -4.7038 18 8 2.9648 0.9728 -4.6948 19 6 3.1080 -1.0779 -5.8540 20 6 1.8878 -1.6068 -6.6105 21 9 1.2160 -0.5395 -7.2162 22 9 2.3041 -2.5129 -7.5918 23 6 3.9813 -2.2517 -5.3458 24 6 5.3761 -1.5899 -5.1829 25 6 5.4785 -0.6216 -6.3794 26 6 4.0364 -0.2961 -6.8061 27 6 1.5097 -2.1308 -3.7268 28 6 1.9208 -2.8146 -2.4178 29 8 1.4657 -2.0290 -1.3134 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 2.2490 -1.6318 1.1527 34 1 3.0608 -0.4624 5.4349 35 1 0.5627 0.2647 -2.4776 36 1 2.1793 1.0134 -2.5278 37 1 1.2175 -2.1091 -5.9131 38 1 3.6125 -2.6217 -4.3892 39 1 4.0179 -3.0535 -6.0832 40 1 6.1632 -2.3422 -5.2324 41 1 5.4325 -1.0415 -4.2425 42 1 6.0124 -1.0988 -7.2012 43 1 5.9938 0.2906 -6.0785 44 1 3.8704 -0.6153 -7.8350 45 1 3.8512 0.7740 -6.7130 46 1 0.4248 -2.1572 -3.8298 47 1 1.9710 -2.6441 -4.5704 48 1 1.4718 -3.8065 -2.3685 49 1 3.0064 -2.9040 -2.3791 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485642619.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:05 Heat of formation + Delta-G solvation = -154.889301 kcal Electronic energy + Delta-G solvation = -33309.395437 eV Core-core repulsion = 28715.028534 eV Total energy + Delta-G solvation = -4594.366903 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.186 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.48208 -47.42063 -41.25021 -39.12936 -37.37388 -35.89388 -34.89603 -32.68151 -31.45741 -30.53627 -29.23582 -28.96229 -27.45026 -25.41905 -24.96271 -23.66728 -22.93788 -21.46009 -20.90843 -19.90837 -19.40150 -18.13174 -17.68981 -17.61638 -17.55856 -16.69934 -16.44368 -16.37106 -15.71765 -15.41028 -15.05080 -14.65382 -14.59029 -14.38747 -14.26679 -13.94913 -13.78713 -13.64241 -13.42060 -13.26481 -13.09663 -12.86004 -12.69910 -12.46797 -12.30108 -11.97316 -11.70664 -11.66720 -11.57929 -11.38737 -11.32252 -11.13935 -10.96915 -10.82039 -10.79478 -10.70552 -10.43626 -10.16535 -10.03869 -9.95225 -9.60051 -8.95477 -8.75964 -7.28878 -5.77765 -3.13309 2.09913 2.44054 3.20424 3.37469 3.41918 3.45117 3.54953 3.68043 3.69106 3.73909 4.13981 4.31281 4.41188 4.50572 4.54798 4.59117 4.67702 4.79292 4.86621 4.93339 4.94888 5.06682 5.09459 5.14137 5.23346 5.26370 5.43009 5.47891 5.50674 5.52300 5.57438 5.62170 5.65047 5.77296 5.78723 5.79946 5.98805 6.04042 6.13731 6.28669 6.43098 6.69745 6.95299 7.02685 7.20420 7.74741 7.98176 8.41281 9.20263 9.92451 10.13066 11.40441 Molecular weight = 346.19amu Principal moments of inertia in cm(-1) A = 0.017957 B = 0.003013 C = 0.002935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.899771 B = 9290.550802 C = 9537.101722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.190 3.810 3 H 0.069 0.931 4 N -0.743 5.743 5 C -0.244 4.244 6 H 0.091 0.909 7 C 0.006 3.994 8 N -0.933 5.933 9 Si 0.885 3.115 10 H -0.284 1.284 11 H -0.277 1.277 12 H -0.292 1.292 13 C 0.072 3.928 14 H 0.065 0.935 15 C 0.084 3.916 16 N -0.610 5.610 17 C 0.535 3.465 18 O -0.515 6.515 19 C -0.138 4.138 20 C 0.268 3.732 21 F -0.195 7.195 22 F -0.195 7.195 23 C -0.123 4.123 24 C -0.122 4.122 25 C -0.120 4.120 26 C -0.106 4.106 27 C 0.050 3.950 28 C 0.046 3.954 29 O -0.359 6.359 30 H 0.058 0.942 31 H 0.038 0.962 32 H 0.056 0.944 33 H 0.366 0.634 34 H 0.259 0.741 35 H 0.086 0.914 36 H 0.103 0.897 37 H 0.118 0.882 38 H 0.086 0.914 39 H 0.093 0.907 40 H 0.076 0.924 41 H 0.070 0.930 42 H 0.068 0.932 43 H 0.071 0.929 44 H 0.076 0.924 45 H 0.092 0.908 46 H 0.085 0.915 47 H 0.096 0.904 48 H 0.107 0.893 49 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.268 -7.486 -26.394 27.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.080 3.920 3 H 0.087 0.913 4 N -0.387 5.387 5 C -0.374 4.374 6 H 0.109 0.891 7 C -0.190 4.190 8 N -0.581 5.581 9 Si 0.715 3.285 10 H -0.210 1.210 11 H -0.204 1.204 12 H -0.219 1.219 13 C 0.012 3.988 14 H 0.083 0.917 15 C -0.038 4.038 16 N -0.345 5.345 17 C 0.322 3.678 18 O -0.389 6.389 19 C -0.143 4.143 20 C 0.215 3.785 21 F -0.176 7.176 22 F -0.176 7.176 23 C -0.161 4.161 24 C -0.160 4.160 25 C -0.157 4.157 26 C -0.144 4.144 27 C -0.073 4.073 28 C -0.033 4.033 29 O -0.277 6.277 30 H 0.077 0.923 31 H 0.057 0.943 32 H 0.075 0.925 33 H 0.199 0.801 34 H 0.069 0.931 35 H 0.104 0.896 36 H 0.122 0.878 37 H 0.135 0.865 38 H 0.104 0.896 39 H 0.111 0.889 40 H 0.094 0.906 41 H 0.089 0.911 42 H 0.087 0.913 43 H 0.089 0.911 44 H 0.094 0.906 45 H 0.111 0.889 46 H 0.103 0.897 47 H 0.114 0.886 48 H 0.125 0.875 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.304 -6.699 -26.095 26.943 hybrid contribution 0.380 -1.340 -0.270 1.419 sum 0.683 -8.039 -26.365 27.572 Atomic orbital electron populations 1.22385 0.98055 1.01680 1.00189 1.20168 0.93087 0.94886 0.83823 0.91333 1.42693 1.79521 1.09716 1.06729 1.19076 1.37104 0.95630 0.85591 0.89136 1.24652 1.01347 0.97502 0.95513 1.69698 1.52585 1.35598 1.00235 0.86536 0.78110 0.86894 0.76914 1.21036 1.20359 1.21872 1.23058 0.97692 0.82954 0.95054 0.91658 1.22533 1.02487 0.95718 0.83077 1.48113 1.54471 1.12682 1.19206 1.19741 0.77654 0.87810 0.82642 1.90710 1.54802 1.15688 1.77719 1.22802 0.96418 0.98952 0.96088 1.22074 0.92029 0.79146 0.85288 1.93031 1.81345 1.57801 1.85421 1.92992 1.91405 1.67459 1.65725 1.22970 0.95153 0.95541 1.02389 1.22405 0.95885 0.98539 0.99151 1.22083 0.96028 0.99738 0.97867 1.22122 0.93255 1.01779 0.97238 1.22965 1.01258 0.82403 1.00643 1.22924 0.99644 0.95296 0.85392 1.88100 1.67638 1.26006 1.45965 0.92315 0.94311 0.92514 0.80088 0.93054 0.89640 0.87847 0.86461 0.89579 0.88867 0.90565 0.91143 0.91301 0.91052 0.90561 0.88910 0.89662 0.88588 0.87497 0.92566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.78 9.06 37.15 0.34 -2.44 16 2 C 0.19 3.51 2.77 -67.93 -0.19 3.33 16 3 H 0.07 1.29 8.08 -51.93 -0.42 0.87 16 4 N -0.74 -17.29 4.91 -53.43 -0.26 -17.55 16 5 C -0.24 -6.78 10.41 -15.06 -0.16 -6.94 16 6 H 0.09 2.68 8.06 -52.48 -0.42 2.26 16 7 C 0.01 0.17 5.50 -17.43 -0.10 0.07 16 8 N -0.93 -29.15 13.97 55.49 0.78 -28.38 16 9 Si 0.89 22.08 27.74 -169.99 -4.71 17.37 16 10 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 11 H -0.28 -6.53 6.52 56.52 0.37 -6.16 16 12 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 13 C 0.07 1.08 2.61 -26.58 -0.07 1.01 16 14 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 15 C 0.08 1.08 5.81 -3.53 -0.02 1.06 16 16 N -0.61 -6.74 2.99 -172.28 -0.52 -7.26 16 17 C 0.54 6.44 6.20 -10.99 -0.07 6.37 16 18 O -0.51 -8.00 14.92 5.55 0.08 -7.91 16 19 C -0.14 -1.27 0.24 -154.01 -0.04 -1.31 16 20 C 0.27 2.25 3.96 37.16 0.15 2.40 16 21 F -0.19 -2.13 16.89 2.25 0.04 -2.09 16 22 F -0.19 -1.64 15.84 2.25 0.04 -1.61 16 23 C -0.12 -0.89 4.90 -24.55 -0.12 -1.01 16 24 C -0.12 -0.98 6.62 -24.88 -0.16 -1.14 16 25 C -0.12 -0.98 6.80 -25.62 -0.17 -1.16 16 26 C -0.11 -1.01 5.44 -25.62 -0.14 -1.15 16 27 C 0.05 0.40 4.18 -3.54 -0.01 0.39 16 28 C 0.05 0.44 6.78 37.31 0.25 0.69 16 29 O -0.36 -5.14 9.24 -35.23 -0.33 -5.46 16 30 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 31 H 0.04 0.54 6.42 -51.93 -0.33 0.21 16 32 H 0.06 0.99 7.55 -51.93 -0.39 0.59 16 33 H 0.37 8.54 5.45 -40.82 -0.22 8.32 16 34 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 35 H 0.09 1.06 6.27 -51.93 -0.33 0.73 16 36 H 0.10 1.44 7.12 -51.93 -0.37 1.07 16 37 H 0.12 0.71 5.08 -51.93 -0.26 0.45 16 38 H 0.09 0.58 4.60 -51.93 -0.24 0.34 16 39 H 0.09 0.55 7.25 -51.93 -0.38 0.17 16 40 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.07 0.47 8.14 -51.92 -0.42 0.04 16 43 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 44 H 0.08 0.66 7.46 -51.93 -0.39 0.28 16 45 H 0.09 1.06 6.81 -51.93 -0.35 0.71 16 46 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.10 0.54 3.15 -51.93 -0.16 0.38 16 48 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 49 H 0.06 0.53 7.43 -51.93 -0.39 0.15 16 LS Contribution 372.69 15.07 5.62 5.62 Total: -1.00 -33.58 372.69 -6.99 -40.57 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: -7.21 Total: 6.53 kcal Atomic # 6 Polarization: 0.68 SS G_CDS: -0.51 Total: 0.17 kcal Atomic # 7 Polarization: -53.18 SS G_CDS: 0.00 Total: -53.18 kcal Atomic # 8 Polarization: -13.13 SS G_CDS: -0.24 Total: -13.38 kcal Atomic # 9 Polarization: -3.77 SS G_CDS: 0.07 Total: -3.70 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -4.71 Total: 17.37 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.58 -6.99 -40.57 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485642619.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.320 kcal (2) G-P(sol) polarization free energy of solvation -33.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds