Wall clock time and date at job start Wed Apr 1 2020 03:56:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47070 * 2 1 4 4 N 1.46506 * 109.46799 * 240.00168 * 2 1 3 5 5 C 1.36932 * 120.00080 * 85.00097 * 4 2 1 6 6 H 1.08000 * 119.99770 * 359.97438 * 5 4 2 7 7 C 1.38815 * 120.00192 * 179.97438 * 5 4 2 8 8 N 1.31611 * 119.99992 * 179.97438 * 7 5 4 9 9 Si 1.86802 * 119.99692 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.46709 * 90.00228 * 9 7 5 11 11 H 1.48501 * 109.46768 * 209.99820 * 9 7 5 12 12 H 1.48497 * 109.47365 * 330.00119 * 9 7 5 13 13 C 1.52999 * 109.47479 * 120.00303 * 2 1 3 14 14 H 1.08997 * 109.55355 * 175.12529 * 13 2 1 15 15 C 1.53300 * 109.51037 * 295.25254 * 13 2 1 16 16 N 1.47152 * 108.38216 * 172.22520 * 15 13 2 17 17 C 1.34780 * 120.98169 * 129.44404 * 16 15 13 18 18 O 1.21272 * 120.00175 * 174.77257 * 17 16 15 19 19 C 1.50707 * 119.99655 * 354.77349 * 17 16 15 20 20 C 1.53003 * 110.43453 * 64.08840 * 19 17 16 21 21 F 1.39906 * 109.46753 * 65.57743 * 20 19 17 22 22 F 1.39894 * 109.47158 * 185.57565 * 20 19 17 23 23 C 1.54890 * 110.48890 * 301.54477 * 19 17 16 24 24 C 1.55234 * 102.58577 * 279.19132 * 23 19 17 25 25 C 1.54265 * 104.23425 * 322.08040 * 24 23 19 26 26 C 1.53871 * 106.59639 * 23.61390 * 25 24 23 27 27 C 1.47143 * 118.03798 * 309.46002 * 16 15 13 28 28 C 1.53295 * 108.38358 * 50.53982 * 27 16 15 29 29 O 1.42963 * 109.51235 * 54.99462 * 13 2 1 30 30 H 1.08998 * 109.47502 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.47148 * 299.99809 * 1 2 3 32 32 H 1.08997 * 109.47636 * 59.99839 * 1 2 3 33 33 H 0.97001 * 119.99734 * 264.99488 * 4 2 1 34 34 H 0.97005 * 120.00201 * 179.97438 * 8 7 5 35 35 H 1.08999 * 109.68088 * 291.95006 * 15 13 2 36 36 H 1.08995 * 109.68231 * 52.46124 * 15 13 2 37 37 H 1.08992 * 109.47383 * 305.57867 * 20 19 17 38 38 H 1.09004 * 110.74968 * 37.58501 * 23 19 17 39 39 H 1.08999 * 110.75330 * 160.94746 * 23 19 17 40 40 H 1.09006 * 110.46141 * 203.39177 * 24 23 19 41 41 H 1.08992 * 110.46993 * 80.77721 * 24 23 19 42 42 H 1.08997 * 110.03549 * 264.32976 * 25 24 23 43 43 H 1.09001 * 110.03183 * 142.89467 * 25 24 23 44 44 H 1.08997 * 110.03670 * 240.71107 * 26 25 24 45 45 H 1.08998 * 110.03062 * 119.28371 * 26 25 24 46 46 H 1.09005 * 109.68501 * 170.26209 * 27 16 15 47 47 H 1.09000 * 109.68777 * 290.82014 * 27 16 15 48 48 H 1.09001 * 109.51602 * 187.77729 * 28 27 16 49 49 H 1.09003 * 109.51462 * 67.62040 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0182 -0.6906 -1.1963 5 6 2.1490 -0.0075 -2.3758 6 1 1.8918 1.0403 -2.4243 7 6 2.6122 -0.6617 -3.5091 8 7 2.7373 -0.0052 -4.6429 9 14 3.0577 -2.4738 -3.4249 10 1 1.8610 -3.2931 -3.7442 11 1 4.1333 -2.7652 -4.4065 12 1 3.5329 -2.8038 -2.0573 13 6 2.0401 -0.7213 1.2492 14 1 3.1265 -0.7982 1.2079 15 6 1.6296 0.0663 2.4987 16 7 1.9649 -0.7374 3.6848 17 6 2.6683 -0.2081 4.7054 18 8 2.8535 -0.8552 5.7142 19 6 3.2246 1.1880 4.5928 20 6 2.0896 2.2081 4.4822 21 9 1.3560 2.2204 5.6735 22 9 2.6259 3.4794 4.2516 23 6 4.1725 1.2972 3.3727 24 6 5.4961 0.6968 3.9178 25 6 5.5681 1.1978 5.3751 26 6 4.1238 1.5101 5.8043 27 6 1.5099 -2.1362 3.7237 28 6 1.9262 -2.8165 2.4145 29 8 1.4705 -2.0311 1.3103 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 2.2490 -1.6318 -1.1527 34 1 3.0613 -0.4622 -5.4348 35 1 2.1709 1.0119 2.5309 36 1 0.5569 0.2582 2.4757 37 1 1.4346 1.9345 3.6551 38 1 3.7943 0.7096 2.5361 39 1 4.3108 2.3389 3.0831 40 1 6.3466 1.0664 3.3449 41 1 5.4606 -0.3922 3.8901 42 1 6.1773 2.1000 5.4302 43 1 5.9887 0.4229 6.0160 44 1 4.0321 2.5638 6.0677 45 1 3.8436 0.8869 6.6534 46 1 1.9720 -2.6493 4.5671 47 1 0.4250 -2.1668 3.8243 48 1 1.4808 -3.8101 2.3629 49 1 3.0123 -2.9012 2.3775 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485642621.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:08 Heat of formation + Delta-G solvation = -155.687729 kcal Electronic energy + Delta-G solvation = -33782.948409 eV Core-core repulsion = 29188.546884 eV Total energy + Delta-G solvation = -4594.401525 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.186 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.34726 -47.28674 -41.24343 -39.10524 -37.39952 -35.68635 -35.08480 -32.66704 -31.51241 -30.48501 -29.20185 -28.79489 -27.55089 -25.37385 -24.87930 -23.84693 -22.77702 -21.42124 -20.82462 -19.96687 -19.31975 -18.04095 -17.76577 -17.50257 -17.42849 -16.74809 -16.43209 -16.34047 -15.55864 -15.33799 -15.14738 -14.66618 -14.60090 -14.33800 -14.15514 -13.81738 -13.70462 -13.58661 -13.39799 -13.22973 -13.03770 -12.87026 -12.69276 -12.44221 -12.28733 -11.88879 -11.76628 -11.59720 -11.49350 -11.38620 -11.26643 -11.09182 -10.94078 -10.87763 -10.73586 -10.69555 -10.44095 -10.19117 -10.06673 -9.96930 -9.64113 -8.99968 -8.77562 -7.33865 -5.81903 -3.17896 2.11106 2.45201 3.31824 3.35477 3.40347 3.43644 3.67255 3.72035 3.77980 3.84138 4.25096 4.42707 4.46758 4.55977 4.61765 4.65102 4.77009 4.86707 4.94427 5.00198 5.05177 5.05958 5.15770 5.19143 5.32980 5.35346 5.38354 5.46186 5.51361 5.52370 5.60658 5.66254 5.67853 5.72086 5.84631 5.86113 5.98997 6.02868 6.09047 6.20981 6.33012 6.61263 6.92730 6.98402 7.17781 7.73440 7.92997 8.36972 9.15691 9.88048 10.08080 11.36054 Molecular weight = 346.19amu Principal moments of inertia in cm(-1) A = 0.013753 B = 0.003595 C = 0.003457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2035.435541 B = 7787.396197 C = 8098.442285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.189 3.811 3 H 0.068 0.932 4 N -0.743 5.743 5 C -0.247 4.247 6 H 0.091 0.909 7 C 0.008 3.992 8 N -0.932 5.932 9 Si 0.883 3.117 10 H -0.284 1.284 11 H -0.292 1.292 12 H -0.277 1.277 13 C 0.072 3.928 14 H 0.068 0.932 15 C 0.054 3.946 16 N -0.610 5.610 17 C 0.539 3.461 18 O -0.522 6.522 19 C -0.139 4.139 20 C 0.267 3.733 21 F -0.197 7.197 22 F -0.192 7.192 23 C -0.125 4.125 24 C -0.121 4.121 25 C -0.119 4.119 26 C -0.106 4.106 27 C 0.079 3.921 28 C 0.045 3.955 29 O -0.359 6.359 30 H 0.057 0.943 31 H 0.037 0.963 32 H 0.059 0.941 33 H 0.367 0.633 34 H 0.260 0.740 35 H 0.100 0.900 36 H 0.092 0.908 37 H 0.120 0.880 38 H 0.089 0.911 39 H 0.096 0.904 40 H 0.078 0.922 41 H 0.066 0.934 42 H 0.069 0.931 43 H 0.068 0.932 44 H 0.076 0.924 45 H 0.090 0.910 46 H 0.100 0.900 47 H 0.079 0.921 48 H 0.106 0.894 49 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.780 1.338 21.326 21.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.079 3.921 3 H 0.086 0.914 4 N -0.386 5.386 5 C -0.376 4.376 6 H 0.109 0.891 7 C -0.188 4.188 8 N -0.579 5.579 9 Si 0.714 3.286 10 H -0.210 1.210 11 H -0.218 1.218 12 H -0.203 1.203 13 C 0.012 3.988 14 H 0.086 0.914 15 C -0.069 4.069 16 N -0.344 5.344 17 C 0.326 3.674 18 O -0.398 6.398 19 C -0.143 4.143 20 C 0.214 3.786 21 F -0.178 7.178 22 F -0.173 7.173 23 C -0.163 4.163 24 C -0.158 4.158 25 C -0.157 4.157 26 C -0.143 4.143 27 C -0.043 4.043 28 C -0.033 4.033 29 O -0.277 6.277 30 H 0.076 0.924 31 H 0.055 0.945 32 H 0.078 0.922 33 H 0.200 0.800 34 H 0.070 0.930 35 H 0.118 0.882 36 H 0.110 0.890 37 H 0.137 0.863 38 H 0.107 0.893 39 H 0.115 0.885 40 H 0.096 0.904 41 H 0.085 0.915 42 H 0.088 0.912 43 H 0.087 0.913 44 H 0.095 0.905 45 H 0.109 0.891 46 H 0.118 0.882 47 H 0.097 0.903 48 H 0.124 0.876 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.758 1.126 21.576 21.619 hybrid contribution 0.372 -1.115 0.115 1.181 sum 1.130 0.011 21.691 21.721 Atomic orbital electron populations 1.22413 0.98051 1.01901 1.00149 1.20191 0.93153 0.94770 0.83987 0.91386 1.42684 1.79458 1.09777 1.06655 1.19045 1.37382 0.95609 0.85576 0.89109 1.24640 1.01216 0.97445 0.95495 1.69695 1.52359 1.35634 1.00255 0.86565 0.78167 0.86896 0.76987 1.21012 1.21847 1.20310 1.23030 0.97826 0.83445 0.94460 0.91422 1.23113 1.02835 0.95612 0.85311 1.48106 1.54609 1.13035 1.18658 1.19773 0.77470 0.87595 0.82606 1.90673 1.58153 1.61915 1.29013 1.22801 0.96697 0.92687 1.02103 1.22087 0.90129 0.80493 0.85929 1.93020 1.78241 1.96570 1.49966 1.92999 1.87379 1.42284 1.94644 1.23011 0.94460 1.04015 0.94783 1.22390 0.96943 1.00648 0.95860 1.22086 0.95931 1.01378 0.96283 1.22118 0.93618 1.02556 0.96028 1.22375 1.00735 0.81194 0.99987 1.22972 0.99548 0.95278 0.85458 1.88096 1.67836 1.25352 1.46434 0.92355 0.94460 0.92161 0.79990 0.93008 0.88222 0.89023 0.86303 0.89262 0.88532 0.90373 0.91484 0.91221 0.91285 0.90487 0.89096 0.88219 0.90290 0.87569 0.92779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.61 9.06 37.16 0.34 -2.28 16 2 C 0.19 3.20 2.77 -67.93 -0.19 3.01 16 3 H 0.07 1.12 8.08 -51.93 -0.42 0.70 16 4 N -0.74 -16.46 4.91 -53.42 -0.26 -16.72 16 5 C -0.25 -6.58 10.41 -15.06 -0.16 -6.73 16 6 H 0.09 2.57 8.06 -52.49 -0.42 2.15 16 7 C 0.01 0.23 5.50 -17.43 -0.10 0.14 16 8 N -0.93 -28.44 13.97 55.49 0.78 -27.66 16 9 Si 0.88 21.69 27.73 -169.99 -4.71 16.98 16 10 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 11 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 12 H -0.28 -6.43 6.52 56.52 0.37 -6.06 16 13 C 0.07 0.99 2.40 -26.58 -0.06 0.92 16 14 H 0.07 0.97 7.42 -51.93 -0.39 0.59 16 15 C 0.05 0.58 3.37 -3.53 -0.01 0.57 16 16 N -0.61 -6.81 2.99 -172.28 -0.52 -7.32 16 17 C 0.54 6.56 6.20 -10.98 -0.07 6.49 16 18 O -0.52 -7.74 14.92 5.56 0.08 -7.66 16 19 C -0.14 -1.44 0.24 -153.99 -0.04 -1.48 16 20 C 0.27 2.70 3.96 37.16 0.15 2.85 16 21 F -0.20 -2.34 16.89 2.25 0.04 -2.30 16 22 F -0.19 -2.02 15.84 2.25 0.04 -1.99 16 23 C -0.13 -1.19 4.90 -24.55 -0.12 -1.31 16 24 C -0.12 -1.12 6.62 -24.89 -0.16 -1.28 16 25 C -0.12 -1.06 6.80 -25.62 -0.17 -1.24 16 26 C -0.11 -1.07 5.44 -25.61 -0.14 -1.21 16 27 C 0.08 0.83 6.62 -3.54 -0.02 0.80 16 28 C 0.05 0.50 6.98 37.31 0.26 0.76 16 29 O -0.36 -5.16 9.24 -35.23 -0.33 -5.48 16 30 H 0.06 0.97 7.56 -51.93 -0.39 0.58 16 31 H 0.04 0.46 6.41 -51.93 -0.33 0.13 16 32 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.37 8.30 5.44 -40.82 -0.22 8.08 16 34 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 35 H 0.10 0.93 3.15 -51.93 -0.16 0.76 16 36 H 0.09 0.92 6.26 -51.93 -0.33 0.59 16 37 H 0.12 1.00 5.08 -51.93 -0.26 0.74 16 38 H 0.09 0.89 4.60 -51.93 -0.24 0.65 16 39 H 0.10 0.84 7.25 -51.93 -0.38 0.47 16 40 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 44 H 0.08 0.74 7.46 -51.93 -0.39 0.35 16 45 H 0.09 1.06 6.81 -51.93 -0.35 0.71 16 46 H 0.10 1.05 7.12 -51.93 -0.37 0.68 16 47 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 48 H 0.11 0.97 8.14 -51.93 -0.42 0.55 16 49 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 372.66 15.07 5.62 5.62 Total: -1.00 -32.17 372.66 -6.97 -39.15 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: -7.21 Total: 7.39 kcal Atomic # 6 Polarization: 0.51 SS G_CDS: -0.50 Total: 0.01 kcal Atomic # 7 Polarization: -51.71 SS G_CDS: 0.00 Total: -51.71 kcal Atomic # 8 Polarization: -12.90 SS G_CDS: -0.24 Total: -13.14 kcal Atomic # 9 Polarization: -4.36 SS G_CDS: 0.07 Total: -4.29 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.71 Total: 16.98 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.17 -6.97 -39.15 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485642621.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.539 kcal (2) G-P(sol) polarization free energy of solvation -32.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds