Wall clock time and date at job start Wed Apr 1 2020 03:56:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47070 * 2 1 4 4 N 1.46506 * 109.46799 * 240.00168 * 2 1 3 5 5 C 1.36932 * 120.00080 * 85.00097 * 4 2 1 6 6 H 1.08000 * 119.99770 * 359.97438 * 5 4 2 7 7 C 1.38815 * 120.00192 * 179.97438 * 5 4 2 8 8 N 1.31611 * 119.99992 * 179.97438 * 7 5 4 9 9 Si 1.86802 * 119.99692 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.46709 * 90.00228 * 9 7 5 11 11 H 1.48501 * 109.46768 * 209.99820 * 9 7 5 12 12 H 1.48497 * 109.47365 * 330.00119 * 9 7 5 13 13 C 1.52999 * 109.47479 * 120.00303 * 2 1 3 14 14 H 1.08997 * 109.55355 * 175.12529 * 13 2 1 15 15 C 1.53300 * 109.51037 * 295.25254 * 13 2 1 16 16 N 1.47152 * 108.38216 * 172.22520 * 15 13 2 17 17 C 1.34780 * 120.98169 * 129.44404 * 16 15 13 18 18 O 1.21272 * 120.00175 * 174.77257 * 17 16 15 19 19 C 1.50707 * 119.99655 * 354.77349 * 17 16 15 20 20 C 1.53003 * 110.43453 * 64.08840 * 19 17 16 21 21 F 1.39906 * 109.46753 * 65.57743 * 20 19 17 22 22 F 1.39894 * 109.47158 * 185.57565 * 20 19 17 23 23 C 1.54890 * 110.48890 * 301.54477 * 19 17 16 24 24 C 1.55234 * 102.58577 * 279.19132 * 23 19 17 25 25 C 1.54265 * 104.23425 * 322.08040 * 24 23 19 26 26 C 1.53871 * 106.59639 * 23.61390 * 25 24 23 27 27 C 1.47143 * 118.03798 * 309.46002 * 16 15 13 28 28 C 1.53295 * 108.38358 * 50.53982 * 27 16 15 29 29 O 1.42963 * 109.51235 * 54.99462 * 13 2 1 30 30 H 1.08998 * 109.47502 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.47148 * 299.99809 * 1 2 3 32 32 H 1.08997 * 109.47636 * 59.99839 * 1 2 3 33 33 H 0.97001 * 119.99734 * 264.99488 * 4 2 1 34 34 H 0.97005 * 120.00201 * 179.97438 * 8 7 5 35 35 H 1.08999 * 109.68088 * 291.95006 * 15 13 2 36 36 H 1.08995 * 109.68231 * 52.46124 * 15 13 2 37 37 H 1.08992 * 109.47383 * 305.57867 * 20 19 17 38 38 H 1.09004 * 110.74968 * 37.58501 * 23 19 17 39 39 H 1.08999 * 110.75330 * 160.94746 * 23 19 17 40 40 H 1.09006 * 110.46141 * 203.39177 * 24 23 19 41 41 H 1.08992 * 110.46993 * 80.77721 * 24 23 19 42 42 H 1.08997 * 110.03549 * 264.32976 * 25 24 23 43 43 H 1.09001 * 110.03183 * 142.89467 * 25 24 23 44 44 H 1.08997 * 110.03670 * 240.71107 * 26 25 24 45 45 H 1.08998 * 110.03062 * 119.28371 * 26 25 24 46 46 H 1.09005 * 109.68501 * 170.26209 * 27 16 15 47 47 H 1.09000 * 109.68777 * 290.82014 * 27 16 15 48 48 H 1.09001 * 109.51602 * 187.77729 * 28 27 16 49 49 H 1.09003 * 109.51462 * 67.62040 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0182 -0.6906 -1.1963 5 6 2.1490 -0.0075 -2.3758 6 1 1.8918 1.0403 -2.4243 7 6 2.6122 -0.6617 -3.5091 8 7 2.7373 -0.0052 -4.6429 9 14 3.0577 -2.4738 -3.4249 10 1 1.8610 -3.2931 -3.7442 11 1 4.1333 -2.7652 -4.4065 12 1 3.5329 -2.8038 -2.0573 13 6 2.0401 -0.7213 1.2492 14 1 3.1265 -0.7982 1.2079 15 6 1.6296 0.0663 2.4987 16 7 1.9649 -0.7374 3.6848 17 6 2.6683 -0.2081 4.7054 18 8 2.8535 -0.8552 5.7142 19 6 3.2246 1.1880 4.5928 20 6 2.0896 2.2081 4.4822 21 9 1.3560 2.2204 5.6735 22 9 2.6259 3.4794 4.2516 23 6 4.1725 1.2972 3.3727 24 6 5.4961 0.6968 3.9178 25 6 5.5681 1.1978 5.3751 26 6 4.1238 1.5101 5.8043 27 6 1.5099 -2.1362 3.7237 28 6 1.9262 -2.8165 2.4145 29 8 1.4705 -2.0311 1.3103 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 2.2490 -1.6318 -1.1527 34 1 3.0613 -0.4622 -5.4348 35 1 2.1709 1.0119 2.5309 36 1 0.5569 0.2582 2.4757 37 1 1.4346 1.9345 3.6551 38 1 3.7943 0.7096 2.5361 39 1 4.3108 2.3389 3.0831 40 1 6.3466 1.0664 3.3449 41 1 5.4606 -0.3922 3.8901 42 1 6.1773 2.1000 5.4302 43 1 5.9887 0.4229 6.0160 44 1 4.0321 2.5638 6.0677 45 1 3.8436 0.8869 6.6534 46 1 1.9720 -2.6493 4.5671 47 1 0.4250 -2.1668 3.8243 48 1 1.4808 -3.8101 2.3629 49 1 3.0123 -2.9012 2.3775 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485642621.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:07 Heat of formation + Delta-G solvation = -176.310070 kcal Electronic energy + Delta-G solvation = -33783.842661 eV Core-core repulsion = 29188.546884 eV Total energy + Delta-G solvation = -4595.295777 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.186 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -50.17403 -48.12330 -42.16352 -40.12309 -38.28683 -37.15949 -36.07956 -34.35275 -32.65842 -31.78644 -30.28063 -29.71391 -28.63465 -26.45444 -25.95988 -24.92925 -24.19817 -22.36720 -21.63088 -21.27365 -20.19364 -19.73674 -18.81206 -18.41364 -18.24955 -17.72393 -17.39532 -17.24129 -16.56515 -16.53349 -16.23198 -16.19609 -15.57591 -15.42460 -15.01092 -14.95049 -14.67376 -14.61363 -14.47902 -14.39768 -14.24275 -14.07909 -13.92733 -13.54265 -13.29059 -13.20475 -12.92455 -12.68282 -12.51401 -12.39814 -12.36117 -12.26704 -12.16869 -11.94456 -11.90476 -11.76172 -11.65208 -11.53391 -11.43429 -11.23737 -10.94600 -10.91608 -9.73345 -9.27925 -7.97777 -5.29565 1.18886 1.40619 1.42918 1.49504 1.56428 2.50736 2.51953 2.69492 2.90078 2.96183 3.04559 3.32562 3.37715 3.47136 3.66668 3.75281 3.81765 3.86811 3.96029 4.02490 4.10854 4.17145 4.22984 4.28956 4.30321 4.39356 4.43384 4.48275 4.59634 4.61951 4.68689 4.74413 4.79179 4.91927 4.94326 4.95430 5.07500 5.10106 5.13706 5.18098 5.27637 5.34520 5.64602 5.83107 6.03691 6.15303 6.27606 6.80860 7.13406 7.90426 8.08244 9.23563 Molecular weight = 346.19amu Principal moments of inertia in cm(-1) A = 0.013753 B = 0.003595 C = 0.003457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2035.435541 B = 7787.396197 C = 8098.442285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.179 3.821 3 H 0.075 0.925 4 N -0.748 5.748 5 C -0.221 4.221 6 H 0.066 0.934 7 C -0.061 4.061 8 N -0.983 5.983 9 Si 0.947 3.053 10 H -0.284 1.284 11 H -0.300 1.300 12 H -0.255 1.255 13 C 0.081 3.919 14 H 0.062 0.938 15 C 0.060 3.940 16 N -0.607 5.607 17 C 0.539 3.461 18 O -0.552 6.552 19 C -0.138 4.138 20 C 0.266 3.734 21 F -0.208 7.208 22 F -0.193 7.193 23 C -0.123 4.123 24 C -0.121 4.121 25 C -0.116 4.116 26 C -0.106 4.106 27 C 0.080 3.920 28 C 0.046 3.954 29 O -0.379 6.379 30 H 0.049 0.951 31 H 0.077 0.923 32 H 0.034 0.966 33 H 0.366 0.634 34 H 0.256 0.744 35 H 0.115 0.885 36 H 0.108 0.892 37 H 0.140 0.860 38 H 0.086 0.914 39 H 0.108 0.892 40 H 0.090 0.910 41 H 0.054 0.946 42 H 0.085 0.915 43 H 0.065 0.935 44 H 0.082 0.918 45 H 0.072 0.928 46 H 0.098 0.902 47 H 0.091 0.909 48 H 0.127 0.873 49 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.607 1.004 23.035 23.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.071 3.929 3 H 0.093 0.907 4 N -0.391 5.391 5 C -0.352 4.352 6 H 0.084 0.916 7 C -0.252 4.252 8 N -0.634 5.634 9 Si 0.775 3.225 10 H -0.211 1.211 11 H -0.227 1.227 12 H -0.180 1.180 13 C 0.022 3.978 14 H 0.079 0.921 15 C -0.062 4.062 16 N -0.340 5.340 17 C 0.326 3.674 18 O -0.430 6.430 19 C -0.142 4.142 20 C 0.212 3.788 21 F -0.189 7.189 22 F -0.174 7.174 23 C -0.160 4.160 24 C -0.159 4.159 25 C -0.154 4.154 26 C -0.144 4.144 27 C -0.041 4.041 28 C -0.031 4.031 29 O -0.298 6.298 30 H 0.068 0.932 31 H 0.096 0.904 32 H 0.054 0.946 33 H 0.199 0.801 34 H 0.064 0.936 35 H 0.133 0.867 36 H 0.126 0.874 37 H 0.157 0.843 38 H 0.104 0.896 39 H 0.126 0.874 40 H 0.108 0.892 41 H 0.073 0.927 42 H 0.103 0.897 43 H 0.084 0.916 44 H 0.101 0.899 45 H 0.091 0.909 46 H 0.116 0.884 47 H 0.109 0.891 48 H 0.145 0.855 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 0.563 0.790 23.349 23.369 hybrid contribution 0.379 -0.959 -0.323 1.081 sum 0.943 -0.169 23.026 23.046 Atomic orbital electron populations 1.22274 0.96824 1.01586 1.00925 1.20468 0.93849 0.95159 0.83424 0.90703 1.42733 1.79735 1.09762 1.06909 1.19052 1.34415 0.94655 0.87035 0.91631 1.25356 1.02769 1.01723 0.95368 1.69859 1.55002 1.37466 1.01108 0.85530 0.77452 0.81784 0.77706 1.21101 1.22673 1.17977 1.22729 0.97250 0.83770 0.94049 0.92055 1.23087 1.03960 0.95514 0.83681 1.48138 1.54125 1.13409 1.18367 1.20024 0.77039 0.88041 0.82264 1.90664 1.59271 1.62854 1.30218 1.22807 0.96987 0.91792 1.02644 1.22272 0.90181 0.80271 0.86030 1.93001 1.78486 1.96606 1.50813 1.92998 1.87443 1.42375 1.94602 1.23034 0.94196 1.04667 0.94124 1.22398 0.97375 0.99896 0.96218 1.22081 0.95347 1.01997 0.95953 1.22109 0.94389 1.02449 0.95429 1.22417 1.01428 0.80741 0.99552 1.23123 0.99529 0.95805 0.84669 1.88059 1.68154 1.25645 1.47935 0.93173 0.90447 0.94637 0.80123 0.93551 0.86706 0.87447 0.84302 0.89565 0.87366 0.89183 0.92749 0.89650 0.91627 0.89940 0.90906 0.88361 0.89061 0.85502 0.93154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.60 9.06 71.98 0.65 -3.95 16 2 C 0.18 5.69 2.77 44.99 0.12 5.81 16 3 H 0.08 2.29 8.08 -2.39 -0.02 2.28 16 4 N -0.75 -32.21 4.91 -322.94 -1.58 -33.79 16 5 C -0.22 -11.78 10.41 84.03 0.87 -10.91 16 6 H 0.07 3.78 8.06 -2.91 -0.02 3.76 16 7 C -0.06 -3.46 5.50 84.86 0.47 -2.99 16 8 N -0.98 -61.40 13.97 21.65 0.30 -61.10 16 9 Si 0.95 44.85 27.73 68.60 1.90 46.75 16 10 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 11 H -0.30 -14.47 7.11 99.48 0.71 -13.77 16 12 H -0.25 -10.98 6.52 99.48 0.65 -10.33 16 13 C 0.08 2.03 2.40 30.69 0.07 2.10 16 14 H 0.06 1.62 7.42 -2.39 -0.02 1.61 16 15 C 0.06 1.10 3.37 86.36 0.29 1.39 16 16 N -0.61 -12.04 2.99 -817.36 -2.45 -14.49 16 17 C 0.54 12.16 6.20 87.66 0.54 12.71 16 18 O -0.55 -15.85 14.92 -3.01 -0.04 -15.90 16 19 C -0.14 -2.60 0.24 -51.85 -0.01 -2.61 16 20 C 0.27 4.72 3.96 71.98 0.29 5.01 16 21 F -0.21 -4.56 16.89 44.97 0.76 -3.80 16 22 F -0.19 -3.58 15.84 44.97 0.71 -2.87 16 23 C -0.12 -2.05 4.90 32.01 0.16 -1.89 16 24 C -0.12 -2.03 6.62 31.79 0.21 -1.82 16 25 C -0.12 -1.89 6.80 31.32 0.21 -1.67 16 26 C -0.11 -2.02 5.44 31.32 0.17 -1.85 16 27 C 0.08 1.48 6.62 86.36 0.57 2.05 16 28 C 0.05 0.90 6.98 72.08 0.50 1.40 16 29 O -0.38 -9.87 9.24 -148.98 -1.38 -11.25 16 30 H 0.05 1.56 7.56 -2.39 -0.02 1.54 16 31 H 0.08 1.63 6.41 -2.38 -0.02 1.62 16 32 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.37 15.85 5.44 -92.71 -0.50 15.35 16 34 H 0.26 15.35 8.31 -92.70 -0.77 14.57 16 35 H 0.12 1.76 3.15 -2.39 -0.01 1.75 16 36 H 0.11 1.68 6.26 -2.39 -0.01 1.66 16 37 H 0.14 1.87 5.08 -2.39 -0.01 1.86 16 38 H 0.09 1.50 4.60 -2.39 -0.01 1.48 16 39 H 0.11 1.58 7.25 -2.39 -0.02 1.56 16 40 H 0.09 1.29 8.14 -2.38 -0.02 1.27 16 41 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 43 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 44 H 0.08 1.45 7.46 -2.39 -0.02 1.44 16 45 H 0.07 1.67 6.81 -2.39 -0.02 1.65 16 46 H 0.10 1.89 7.12 -2.38 -0.02 1.87 16 47 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 48 H 0.13 1.94 8.14 -2.39 -0.02 1.92 16 49 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -70.16 372.66 3.77 -66.39 By element: Atomic # 1 Polarization: 26.84 SS G_CDS: 0.42 Total: 27.27 kcal Atomic # 6 Polarization: -2.34 SS G_CDS: 5.12 Total: 2.78 kcal Atomic # 7 Polarization: -105.65 SS G_CDS: -3.73 Total: -109.38 kcal Atomic # 8 Polarization: -25.73 SS G_CDS: -1.42 Total: -27.15 kcal Atomic # 9 Polarization: -8.14 SS G_CDS: 1.47 Total: -6.67 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 1.90 Total: 46.75 kcal Total: -70.16 3.77 -66.39 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485642621.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.922 kcal (2) G-P(sol) polarization free energy of solvation -70.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds