Wall clock time and date at job start Wed Apr 1 2020 03:56:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.46809 * 2 1 4 4 N 1.46498 * 109.46661 * 240.00028 * 2 1 3 5 5 C 1.36940 * 120.00140 * 85.00409 * 4 2 1 6 6 H 1.07998 * 119.99525 * 359.97438 * 5 4 2 7 7 C 1.38807 * 120.00086 * 179.97438 * 5 4 2 8 8 N 1.31621 * 120.00089 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00045 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47119 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47564 * 119.99604 * 9 7 5 12 12 H 1.48503 * 109.47127 * 239.99806 * 9 7 5 13 13 C 1.52995 * 109.47072 * 120.00273 * 2 1 3 14 14 H 1.09004 * 109.51563 * 300.10024 * 13 2 1 15 15 C 1.53290 * 109.51525 * 179.97438 * 13 2 1 16 16 N 1.47154 * 108.42038 * 187.70357 * 15 13 2 17 17 C 1.34769 * 120.98210 * 230.54091 * 16 15 13 18 18 O 1.21283 * 120.00226 * 354.77034 * 17 16 15 19 19 C 1.50701 * 119.99902 * 174.76881 * 17 16 15 20 20 C 1.53005 * 110.43463 * 64.07826 * 19 17 16 21 21 F 1.39895 * 109.46890 * 65.57709 * 20 19 17 22 22 F 1.39896 * 109.46733 * 185.57770 * 20 19 17 23 23 C 1.54889 * 110.48514 * 301.53593 * 19 17 16 24 24 C 1.55242 * 102.58807 * 279.18737 * 23 19 17 25 25 C 1.54269 * 104.22865 * 322.08548 * 24 23 19 26 26 C 1.53874 * 106.60036 * 23.61100 * 25 24 23 27 27 C 1.47223 * 117.98241 * 50.51805 * 16 15 13 28 28 C 1.53293 * 108.40807 * 309.48455 * 27 16 15 29 29 O 1.42963 * 109.22262 * 52.30900 * 28 27 16 30 30 H 1.09002 * 109.46988 * 300.00456 * 1 2 3 31 31 H 1.09001 * 109.46866 * 59.99339 * 1 2 3 32 32 H 1.08993 * 109.47502 * 180.02562 * 1 2 3 33 33 H 0.96999 * 120.00355 * 264.99899 * 4 2 1 34 34 H 0.96998 * 119.99960 * 179.97438 * 8 7 5 35 35 H 1.09004 * 109.68148 * 307.44614 * 15 13 2 36 36 H 1.08998 * 109.68340 * 67.95564 * 15 13 2 37 37 H 1.09004 * 109.46857 * 305.57578 * 20 19 17 38 38 H 1.08996 * 110.75754 * 37.57624 * 23 19 17 39 39 H 1.08999 * 110.75460 * 160.94783 * 23 19 17 40 40 H 1.08996 * 110.46409 * 203.39605 * 24 23 19 41 41 H 1.09001 * 110.58131 * 80.83016 * 24 23 19 42 42 H 1.09000 * 110.03013 * 264.32024 * 25 24 23 43 43 H 1.09002 * 110.02994 * 142.89870 * 25 24 23 44 44 H 1.08999 * 110.02971 * 240.71492 * 26 25 24 45 45 H 1.08997 * 110.06824 * 119.30765 * 26 25 24 46 46 H 1.09011 * 109.66747 * 189.75989 * 27 16 15 47 47 H 1.09003 * 109.70957 * 69.23588 * 27 16 15 48 48 H 1.09001 * 109.51429 * 292.38603 * 28 27 16 49 49 H 1.09002 * 109.56173 * 172.26055 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1491 -0.0075 -2.3758 6 1 1.8919 1.0403 -2.4243 7 6 2.6122 -0.6617 -3.5090 8 7 2.9260 -1.9386 -3.4497 9 14 2.7913 0.2703 -5.1180 10 1 2.3763 1.6825 -4.9208 11 1 4.2084 0.2275 -5.5598 12 1 1.9310 -0.3581 -6.1525 13 6 2.0400 -0.7213 1.2492 14 1 1.6756 -0.2091 2.1397 15 6 3.5729 -0.7224 1.2499 16 7 4.0368 -1.5765 2.3548 17 6 4.9526 -1.1320 3.2379 18 8 5.4770 -0.0506 3.0752 19 6 5.3250 -1.9786 4.4277 20 6 5.9905 -3.2784 3.9712 21 9 7.2124 -2.9856 3.3560 22 9 6.2120 -4.1030 5.0793 23 6 4.0741 -2.2834 5.2889 24 6 3.9148 -0.9853 6.1254 25 6 5.3625 -0.5660 6.4543 26 6 6.2591 -1.1975 5.3749 27 6 3.4697 -2.9306 2.4662 28 6 1.9417 -2.8219 2.4063 29 8 1.5683 -2.0709 1.2486 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 2.2489 -1.6318 -1.1527 34 1 3.2493 -2.3958 -4.2418 35 1 3.9402 -1.1165 0.3022 36 1 3.9408 0.2937 1.3920 37 1 5.3399 -3.7900 3.2618 38 1 3.2013 -2.4485 4.6574 39 1 4.2513 -3.1416 5.9371 40 1 3.3588 -1.1877 7.0408 41 1 3.4169 -0.2115 5.5409 42 1 5.6445 -0.9387 7.4390 43 1 5.4523 0.5199 6.4259 44 1 6.9763 -1.8767 5.8358 45 1 6.7846 -0.4186 4.8226 46 1 3.7690 -3.3769 3.4146 47 1 3.8264 -3.5475 1.6414 48 1 1.5773 -2.3170 3.3009 49 1 1.5069 -3.8198 2.3488 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485642622.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:12 Heat of formation + Delta-G solvation = -159.180341 kcal Electronic energy + Delta-G solvation = -33494.521206 eV Core-core repulsion = 28899.968230 eV Total energy + Delta-G solvation = -4594.552976 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.186 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.31055 -47.24591 -41.03736 -38.92905 -37.21193 -35.66171 -34.71110 -32.40372 -31.34614 -30.19771 -29.06482 -28.43959 -27.71619 -25.27218 -24.34084 -23.59243 -23.15701 -21.37374 -20.78994 -19.78394 -19.19953 -17.88475 -17.51975 -17.40688 -17.27265 -16.44497 -16.29670 -16.23014 -15.41457 -15.29229 -14.80224 -14.60509 -14.31284 -14.20647 -14.09601 -13.78610 -13.56769 -13.46861 -13.38539 -13.26377 -12.99298 -12.79131 -12.45051 -12.07638 -11.99522 -11.82597 -11.59902 -11.49051 -11.44172 -11.26007 -11.20946 -10.94884 -10.86132 -10.81267 -10.71425 -10.53274 -10.31230 -10.09585 -9.92039 -9.74776 -9.60406 -8.94651 -8.49991 -6.94320 -5.75340 -3.03887 2.30684 2.69459 3.37504 3.44357 3.50456 3.52273 3.72753 3.85184 3.86260 3.89504 4.26538 4.47526 4.59688 4.62373 4.69201 4.72210 4.79390 4.95871 5.02833 5.04856 5.15823 5.22323 5.25701 5.31105 5.34671 5.40016 5.58884 5.59557 5.60900 5.64037 5.67547 5.79176 5.83094 5.87761 5.95706 6.07668 6.16843 6.25584 6.36659 6.47569 6.62587 6.74772 7.09877 7.22477 7.38406 7.71878 7.97589 8.42901 9.55531 10.11645 10.48764 11.46927 Molecular weight = 346.19amu Principal moments of inertia in cm(-1) A = 0.015446 B = 0.003240 C = 0.003049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1812.365618 B = 8639.761532 C = 9181.167448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.182 3.818 3 H 0.060 0.940 4 N -0.717 5.717 5 C -0.239 4.239 6 H 0.070 0.930 7 C -0.011 4.011 8 N -0.930 5.930 9 Si 0.904 3.096 10 H -0.281 1.281 11 H -0.292 1.292 12 H -0.292 1.292 13 C 0.078 3.922 14 H 0.055 0.945 15 C 0.086 3.914 16 N -0.608 5.608 17 C 0.533 3.467 18 O -0.519 6.519 19 C -0.138 4.138 20 C 0.267 3.733 21 F -0.194 7.194 22 F -0.196 7.196 23 C -0.123 4.123 24 C -0.121 4.121 25 C -0.119 4.119 26 C -0.107 4.107 27 C 0.049 3.951 28 C 0.049 3.951 29 O -0.355 6.355 30 H 0.032 0.968 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.390 0.610 34 H 0.254 0.746 35 H 0.100 0.900 36 H 0.097 0.903 37 H 0.120 0.880 38 H 0.086 0.914 39 H 0.092 0.908 40 H 0.074 0.926 41 H 0.068 0.932 42 H 0.067 0.933 43 H 0.070 0.930 44 H 0.075 0.925 45 H 0.092 0.908 46 H 0.093 0.907 47 H 0.088 0.912 48 H 0.051 0.949 49 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.210 -3.886 22.475 22.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.072 3.928 3 H 0.078 0.922 4 N -0.359 5.359 5 C -0.371 4.371 6 H 0.088 0.912 7 C -0.207 4.207 8 N -0.578 5.578 9 Si 0.735 3.265 10 H -0.206 1.206 11 H -0.219 1.219 12 H -0.220 1.220 13 C 0.019 3.981 14 H 0.073 0.927 15 C -0.035 4.035 16 N -0.342 5.342 17 C 0.319 3.681 18 O -0.394 6.394 19 C -0.142 4.142 20 C 0.214 3.786 21 F -0.175 7.175 22 F -0.178 7.178 23 C -0.160 4.160 24 C -0.158 4.158 25 C -0.157 4.157 26 C -0.145 4.145 27 C -0.074 4.074 28 C -0.029 4.029 29 O -0.273 6.273 30 H 0.051 0.949 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.225 0.775 34 H 0.064 0.936 35 H 0.118 0.882 36 H 0.115 0.885 37 H 0.137 0.863 38 H 0.104 0.896 39 H 0.110 0.890 40 H 0.093 0.907 41 H 0.087 0.913 42 H 0.086 0.914 43 H 0.088 0.912 44 H 0.094 0.906 45 H 0.111 0.889 46 H 0.111 0.889 47 H 0.106 0.894 48 H 0.070 0.930 49 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 1.454 -3.245 22.091 22.375 hybrid contribution 0.456 0.010 -0.739 0.868 sum 1.910 -3.235 21.352 21.680 Atomic orbital electron populations 1.22352 0.98468 1.01561 0.99664 1.20257 0.92798 0.94651 0.85134 0.92209 1.42384 1.77674 1.10994 1.04898 1.19282 1.36520 0.93859 0.87401 0.91157 1.24709 1.02140 0.95914 0.97944 1.69678 1.50791 1.08632 1.28684 0.86164 0.77269 0.78834 0.84192 1.20582 1.21943 1.21958 1.22945 0.92096 0.83315 0.99733 0.92679 1.22503 0.94925 0.96456 0.89635 1.48175 1.41624 1.15359 1.29033 1.19693 0.79208 0.86800 0.82360 1.90699 1.51883 1.22214 1.74565 1.22793 0.99582 0.95050 0.96772 1.22093 0.83454 0.89600 0.83493 1.93036 1.47402 1.94113 1.82943 1.92977 1.95505 1.73474 1.55794 1.22959 0.94934 1.00132 0.97966 1.22392 0.97283 0.96339 0.99831 1.22077 0.94207 1.01102 0.98272 1.22116 0.97023 0.99946 0.95366 1.22966 0.96563 0.84546 1.03315 1.22884 0.92243 0.97922 0.89862 1.88134 1.75140 1.23603 1.40409 0.94885 0.92710 0.92541 0.77533 0.93638 0.88171 0.88471 0.86339 0.89557 0.88963 0.90719 0.91279 0.91383 0.91169 0.90627 0.88910 0.88878 0.89355 0.93033 0.87626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.86 9.35 37.16 0.35 -2.51 16 2 C 0.18 3.49 2.73 -67.93 -0.19 3.30 16 3 H 0.06 1.15 8.08 -51.93 -0.42 0.73 16 4 N -0.72 -17.25 4.29 -53.43 -0.23 -17.48 16 5 C -0.24 -6.47 9.93 -15.06 -0.15 -6.62 16 6 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 7 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 8 N -0.93 -27.63 13.06 55.49 0.72 -26.91 16 9 Si 0.90 22.28 29.55 -169.99 -5.02 17.25 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 12 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 13 C 0.08 1.25 2.52 -26.58 -0.07 1.19 16 14 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 15 C 0.09 1.44 5.84 -3.53 -0.02 1.42 16 16 N -0.61 -8.31 3.00 -172.22 -0.52 -8.83 16 17 C 0.53 7.53 6.20 -10.99 -0.07 7.46 16 18 O -0.52 -9.19 14.92 5.55 0.08 -9.11 16 19 C -0.14 -1.48 0.24 -154.00 -0.04 -1.51 16 20 C 0.27 2.80 3.97 37.16 0.15 2.95 16 21 F -0.19 -2.60 16.89 2.25 0.04 -2.57 16 22 F -0.20 -1.97 15.84 2.25 0.04 -1.93 16 23 C -0.12 -0.98 4.90 -24.55 -0.12 -1.10 16 24 C -0.12 -0.98 6.62 -24.88 -0.16 -1.15 16 25 C -0.12 -1.04 6.80 -25.61 -0.17 -1.21 16 26 C -0.11 -1.14 5.44 -25.61 -0.14 -1.28 16 27 C 0.05 0.51 4.19 -3.50 -0.01 0.50 16 28 C 0.05 0.53 6.78 37.31 0.25 0.78 16 29 O -0.36 -5.57 9.23 -35.23 -0.33 -5.89 16 30 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.06 1.05 7.69 -51.93 -0.40 0.65 16 33 H 0.39 10.12 7.20 -40.82 -0.29 9.83 16 34 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 35 H 0.10 2.00 7.27 -51.93 -0.38 1.62 16 36 H 0.10 1.71 7.12 -51.93 -0.37 1.34 16 37 H 0.12 1.03 5.08 -51.93 -0.26 0.76 16 38 H 0.09 0.63 4.61 -51.93 -0.24 0.40 16 39 H 0.09 0.61 7.25 -51.93 -0.38 0.23 16 40 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.08 0.75 7.46 -51.93 -0.39 0.36 16 45 H 0.09 1.20 6.81 -51.93 -0.35 0.84 16 46 H 0.09 0.70 3.16 -51.92 -0.16 0.54 16 47 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 48 H 0.05 0.48 7.43 -51.93 -0.39 0.09 16 49 H 0.11 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 377.69 15.07 5.69 5.69 Total: -1.00 -32.12 377.69 -7.39 -39.52 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: -7.38 Total: 8.44 kcal Atomic # 6 Polarization: 2.31 SS G_CDS: -0.49 Total: 1.82 kcal Atomic # 7 Polarization: -53.20 SS G_CDS: -0.02 Total: -53.22 kcal Atomic # 8 Polarization: -14.76 SS G_CDS: -0.24 Total: -15.00 kcal Atomic # 9 Polarization: -4.57 SS G_CDS: 0.07 Total: -4.50 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.12 -7.39 -39.52 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485642622.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.662 kcal (2) G-P(sol) polarization free energy of solvation -32.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds