Wall clock time and date at job start Wed Apr 1 2020 03:56:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.47202 * 2 1 4 4 N 1.46503 * 109.47504 * 120.00095 * 2 1 3 5 5 C 1.36945 * 119.99794 * 275.00207 * 4 2 1 6 6 H 1.07997 * 119.99844 * 0.02562 * 5 4 2 7 7 C 1.38811 * 120.00038 * 179.97438 * 5 4 2 8 8 N 1.31627 * 119.99540 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00349 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.46706 * 59.99907 * 9 7 5 11 11 H 1.48496 * 109.47303 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47018 * 300.00443 * 9 7 5 13 13 C 1.52997 * 109.47164 * 239.99903 * 2 1 3 14 14 H 1.09004 * 109.51160 * 64.99907 * 13 2 1 15 15 C 1.53293 * 109.51379 * 185.09714 * 13 2 1 16 16 N 1.47168 * 108.37716 * 172.17604 * 15 13 2 17 17 C 1.34781 * 120.94089 * 129.50463 * 16 15 13 18 18 O 1.21285 * 119.99821 * 174.81311 * 17 16 15 19 19 C 1.50697 * 120.00310 * 354.80714 * 17 16 15 20 20 C 1.53001 * 110.43339 * 64.06724 * 19 17 16 21 21 F 1.39904 * 109.46761 * 65.58221 * 20 19 17 22 22 F 1.39899 * 109.47201 * 185.58237 * 20 19 17 23 23 C 1.54892 * 110.48715 * 301.53160 * 19 17 16 24 24 C 1.55241 * 102.58796 * 279.18567 * 23 19 17 25 25 C 1.54272 * 104.22855 * 322.08634 * 24 23 19 26 26 C 1.53877 * 106.60090 * 23.60873 * 25 24 23 27 27 C 1.47154 * 118.07785 * 309.54982 * 16 15 13 28 28 C 1.53295 * 108.38312 * 50.49993 * 27 16 15 29 29 O 1.42963 * 109.51402 * 304.89695 * 13 2 1 30 30 H 1.09004 * 109.47202 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47313 * 299.99640 * 1 2 3 32 32 H 1.08997 * 109.47345 * 60.00357 * 1 2 3 33 33 H 0.96994 * 120.00115 * 94.99724 * 4 2 1 34 34 H 0.97000 * 119.99449 * 179.97438 * 8 7 5 35 35 H 1.09004 * 109.68721 * 291.95428 * 15 13 2 36 36 H 1.09004 * 109.68263 * 52.50617 * 15 13 2 37 37 H 1.09001 * 109.47176 * 305.58589 * 20 19 17 38 38 H 1.09004 * 110.75858 * 37.57084 * 23 19 17 39 39 H 1.08995 * 110.75810 * 160.94582 * 23 19 17 40 40 H 1.08998 * 110.46780 * 203.39249 * 24 23 19 41 41 H 1.08999 * 110.47112 * 80.76883 * 24 23 19 42 42 H 1.09004 * 110.02694 * 264.32548 * 25 24 23 43 43 H 1.08992 * 110.03123 * 142.89737 * 25 24 23 44 44 H 1.08999 * 110.03040 * 240.72063 * 26 25 24 45 45 H 1.08991 * 110.03177 * 119.28436 * 26 25 24 46 46 H 1.09001 * 109.67823 * 290.78344 * 27 16 15 47 47 H 1.08995 * 109.71370 * 170.23989 * 27 16 15 48 48 H 1.08996 * 109.51263 * 187.77618 * 28 27 16 49 49 H 1.09000 * 109.55337 * 67.64824 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1492 -0.0074 2.3758 6 1 1.8918 1.0403 2.4244 7 6 2.6114 -0.6619 3.5093 8 7 2.9246 -1.9390 3.4501 9 14 2.7905 0.2701 5.1182 10 1 1.4685 0.8078 5.5285 11 1 3.2995 -0.6483 6.1683 12 1 3.7464 1.3919 4.9367 13 6 2.0399 -0.7213 -1.2492 14 1 1.7519 -0.1588 -2.1374 15 6 3.5675 -0.8339 -1.1876 16 7 4.0146 -1.6908 -2.2974 17 6 4.9972 -1.2913 -3.1290 18 8 5.4172 -2.0477 -3.9790 19 6 5.5739 0.0952 -3.0028 20 6 6.2712 0.2627 -1.6512 21 9 7.3836 -0.5838 -1.5924 22 9 6.6869 1.5902 -1.5023 23 6 4.4641 1.1618 -3.1759 24 6 4.3145 1.2470 -4.7188 25 6 5.7572 1.1101 -5.2478 26 6 6.5579 0.3778 -4.1567 27 6 3.3573 -2.9956 -2.4733 28 6 1.8400 -2.7765 -2.4729 29 8 1.4723 -2.0320 -1.3090 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 2.2491 -1.6317 1.1526 34 1 3.2479 -2.3962 4.2421 35 1 4.0130 0.1562 -1.2847 36 1 3.8648 -1.2792 -0.2382 37 1 5.5774 0.0071 -0.8503 38 1 3.5345 0.8307 -2.7129 39 1 4.7818 2.1200 -2.7650 40 1 3.8916 2.2090 -5.0082 41 1 3.6941 0.4300 -5.0873 42 1 6.1847 2.0969 -5.4259 43 1 5.7633 0.5282 -6.1694 44 1 7.3740 1.0092 -3.8053 45 1 6.9526 -0.5594 -4.5488 46 1 3.6326 -3.6588 -1.6533 47 1 3.6641 -3.4370 -3.4215 48 1 1.3329 -3.7412 -2.4632 49 1 1.5512 -2.2223 -3.3659 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485642624.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:15 Heat of formation + Delta-G solvation = -159.850273 kcal Electronic energy + Delta-G solvation = -34099.656122 eV Core-core repulsion = 29505.074095 eV Total energy + Delta-G solvation = -4594.582027 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.186 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.08248 -47.02198 -41.01687 -38.90594 -37.23771 -35.46150 -34.87937 -32.47025 -31.35170 -30.05145 -28.94259 -28.45411 -27.79879 -25.08559 -24.27035 -23.76126 -23.09748 -21.32549 -20.69435 -19.81544 -19.07884 -17.75629 -17.37778 -17.33037 -17.18891 -16.50961 -16.20196 -16.10127 -15.58617 -15.14830 -14.74178 -14.62201 -14.27914 -14.17044 -13.90541 -13.68806 -13.47482 -13.39975 -13.37534 -13.13697 -13.01407 -12.63747 -12.36449 -12.07179 -12.03313 -11.75483 -11.50834 -11.46190 -11.40302 -11.33490 -11.09349 -10.93588 -10.85282 -10.75662 -10.62843 -10.52767 -10.37521 -10.12944 -9.98101 -9.74806 -9.66241 -8.99822 -8.51398 -7.02462 -5.81461 -3.11266 2.33137 2.71693 3.40714 3.45965 3.47014 3.54396 3.87467 3.94870 4.01018 4.06965 4.40248 4.53690 4.68840 4.75738 4.82577 4.85866 4.94264 5.08431 5.12793 5.16734 5.18861 5.24460 5.31208 5.36157 5.44322 5.47489 5.53087 5.56019 5.66256 5.70385 5.75260 5.80664 5.85053 5.90057 5.94224 6.09040 6.13630 6.18550 6.28845 6.33918 6.56093 6.69375 7.06731 7.21677 7.35812 7.64614 7.96482 8.36224 9.48746 10.03646 10.40227 11.40270 Molecular weight = 346.19amu Principal moments of inertia in cm(-1) A = 0.011373 B = 0.004306 C = 0.003736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2461.413056 B = 6501.370080 C = 7492.728291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.181 3.819 3 H 0.060 0.940 4 N -0.718 5.718 5 C -0.245 4.245 6 H 0.070 0.930 7 C -0.008 4.008 8 N -0.928 5.928 9 Si 0.904 3.096 10 H -0.286 1.286 11 H -0.292 1.292 12 H -0.286 1.286 13 C 0.078 3.922 14 H 0.058 0.942 15 C 0.057 3.943 16 N -0.608 5.608 17 C 0.537 3.463 18 O -0.528 6.528 19 C -0.136 4.136 20 C 0.265 3.735 21 F -0.197 7.197 22 F -0.194 7.194 23 C -0.124 4.124 24 C -0.120 4.120 25 C -0.119 4.119 26 C -0.106 4.106 27 C 0.078 3.922 28 C 0.049 3.951 29 O -0.356 6.356 30 H 0.057 0.943 31 H 0.054 0.946 32 H 0.033 0.967 33 H 0.389 0.611 34 H 0.256 0.744 35 H 0.096 0.904 36 H 0.107 0.893 37 H 0.126 0.874 38 H 0.088 0.912 39 H 0.094 0.906 40 H 0.075 0.925 41 H 0.066 0.934 42 H 0.068 0.932 43 H 0.068 0.932 44 H 0.076 0.924 45 H 0.091 0.909 46 H 0.082 0.918 47 H 0.097 0.903 48 H 0.105 0.895 49 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.931 4.664 -17.153 17.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.070 3.930 3 H 0.078 0.922 4 N -0.361 5.361 5 C -0.376 4.376 6 H 0.088 0.912 7 C -0.205 4.205 8 N -0.576 5.576 9 Si 0.735 3.265 10 H -0.213 1.213 11 H -0.217 1.217 12 H -0.212 1.212 13 C 0.019 3.981 14 H 0.075 0.925 15 C -0.065 4.065 16 N -0.342 5.342 17 C 0.324 3.676 18 O -0.405 6.405 19 C -0.141 4.141 20 C 0.211 3.789 21 F -0.178 7.178 22 F -0.176 7.176 23 C -0.161 4.161 24 C -0.158 4.158 25 C -0.156 4.156 26 C -0.144 4.144 27 C -0.045 4.045 28 C -0.029 4.029 29 O -0.274 6.274 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.052 0.948 33 H 0.224 0.776 34 H 0.066 0.934 35 H 0.113 0.887 36 H 0.125 0.875 37 H 0.143 0.857 38 H 0.106 0.894 39 H 0.113 0.887 40 H 0.093 0.907 41 H 0.085 0.915 42 H 0.086 0.914 43 H 0.087 0.913 44 H 0.094 0.906 45 H 0.109 0.891 46 H 0.100 0.900 47 H 0.115 0.885 48 H 0.123 0.877 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 2.108 4.287 -17.309 17.956 hybrid contribution 0.435 0.243 0.920 1.046 sum 2.543 4.529 -16.389 17.192 Atomic orbital electron populations 1.22327 0.98289 1.01759 0.99658 1.20287 0.93102 0.94482 0.85117 0.92199 1.42430 1.77715 1.11002 1.04971 1.19170 1.37168 0.93829 0.87427 0.91185 1.24721 1.01963 0.95858 0.97925 1.69657 1.50305 1.08591 1.29046 0.86322 0.77782 0.78647 0.83731 1.21285 1.21745 1.21242 1.22908 0.90697 0.84787 0.99740 0.92461 1.23081 0.96889 0.95709 0.90791 1.48167 1.36540 1.19263 1.30193 1.19736 0.79308 0.87524 0.81026 1.90658 1.59664 1.54432 1.35701 1.22752 0.99020 0.95672 0.96612 1.22171 0.84881 0.73097 0.98718 1.93012 1.56430 1.70834 1.97501 1.92977 1.91710 1.36198 1.96677 1.22988 0.97011 0.97899 0.98249 1.22393 0.97213 1.02237 0.93925 1.22078 0.94862 1.00354 0.98321 1.22112 0.96651 1.02430 0.93208 1.22363 0.93278 0.84761 1.04061 1.22925 0.93424 0.97528 0.89051 1.88132 1.70545 1.26872 1.41853 0.92388 0.92708 0.94843 0.77567 0.93408 0.88664 0.87469 0.85699 0.89379 0.88728 0.90661 0.91521 0.91352 0.91343 0.90558 0.89079 0.90006 0.88466 0.87737 0.93226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.71 9.30 37.16 0.35 -2.37 16 2 C 0.18 3.17 2.80 -67.93 -0.19 2.98 16 3 H 0.06 1.01 8.08 -51.93 -0.42 0.59 16 4 N -0.72 -16.24 4.24 -53.43 -0.23 -16.47 16 5 C -0.24 -6.26 9.93 -15.06 -0.15 -6.41 16 6 H 0.07 1.73 7.83 -52.49 -0.41 1.32 16 7 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 8 N -0.93 -26.74 13.06 55.49 0.72 -26.02 16 9 Si 0.90 21.49 29.55 -169.99 -5.02 16.47 16 10 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 12 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 13 C 0.08 1.15 2.36 -26.58 -0.06 1.08 16 14 H 0.06 0.73 7.43 -51.93 -0.39 0.34 16 15 C 0.06 0.83 3.36 -3.53 -0.01 0.82 16 16 N -0.61 -8.44 2.99 -172.26 -0.52 -8.95 16 17 C 0.54 7.74 6.20 -10.98 -0.07 7.67 16 18 O -0.53 -8.86 14.92 5.55 0.08 -8.78 16 19 C -0.14 -1.69 0.24 -154.00 -0.04 -1.73 16 20 C 0.27 3.60 3.96 37.16 0.15 3.74 16 21 F -0.20 -3.06 16.89 2.25 0.04 -3.02 16 22 F -0.19 -2.61 15.84 2.25 0.04 -2.57 16 23 C -0.12 -1.27 4.90 -24.55 -0.12 -1.39 16 24 C -0.12 -1.11 6.62 -24.88 -0.16 -1.27 16 25 C -0.12 -1.12 6.80 -25.61 -0.17 -1.30 16 26 C -0.11 -1.24 5.44 -25.61 -0.14 -1.38 16 27 C 0.08 1.01 6.62 -3.53 -0.02 0.98 16 28 C 0.05 0.59 6.99 37.31 0.26 0.85 16 29 O -0.36 -5.55 9.24 -35.23 -0.33 -5.87 16 30 H 0.06 1.06 7.56 -51.93 -0.39 0.66 16 31 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 32 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.39 9.66 7.08 -40.82 -0.29 9.37 16 34 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 35 H 0.10 1.23 3.16 -51.93 -0.16 1.06 16 36 H 0.11 1.90 6.93 -51.93 -0.36 1.54 16 37 H 0.13 1.70 5.08 -51.93 -0.26 1.44 16 38 H 0.09 0.91 4.60 -51.93 -0.24 0.67 16 39 H 0.09 0.90 7.25 -51.93 -0.38 0.52 16 40 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.08 0.86 7.46 -51.93 -0.39 0.47 16 45 H 0.09 1.21 6.81 -51.93 -0.35 0.85 16 46 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 47 H 0.10 1.21 7.12 -51.93 -0.37 0.84 16 48 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 49 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 LS Contribution 377.05 15.07 5.68 5.68 Total: -1.00 -30.09 377.05 -7.36 -37.46 By element: Atomic # 1 Polarization: 17.47 SS G_CDS: -7.35 Total: 10.11 kcal Atomic # 6 Polarization: 2.45 SS G_CDS: -0.48 Total: 1.96 kcal Atomic # 7 Polarization: -51.42 SS G_CDS: -0.02 Total: -51.44 kcal Atomic # 8 Polarization: -14.41 SS G_CDS: -0.24 Total: -14.65 kcal Atomic # 9 Polarization: -5.67 SS G_CDS: 0.07 Total: -5.59 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -30.09 -7.36 -37.46 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485642624.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.391 kcal (2) G-P(sol) polarization free energy of solvation -30.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds