Wall clock time and date at job start Wed Apr 1 2020 05:00:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00222 * 2 1 4 4 H 1.48498 * 109.47028 * 240.00373 * 3 2 1 5 5 H 1.48503 * 109.46851 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47412 * 119.99982 * 3 2 1 7 7 C 1.38817 * 119.99869 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99438 * 180.27052 * 7 2 1 9 9 N 1.36935 * 119.99990 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99938 * 179.97438 * 9 7 2 11 11 H 1.09003 * 109.51969 * 34.87280 * 10 9 7 12 12 C 1.53176 * 109.52256 * 274.68692 * 10 9 7 13 13 C 1.53177 * 109.03659 * 297.07314 * 12 10 9 14 14 C 1.53097 * 109.16011 * 303.02136 * 13 12 10 15 15 O 1.42904 * 109.41490 * 57.60719 * 14 13 12 16 16 C 1.42900 * 114.09769 * 298.83891 * 15 14 13 17 17 H 1.08996 * 109.48292 * 301.17841 * 16 15 14 18 18 C 1.52997 * 109.47779 * 181.13939 * 16 15 14 19 19 C 1.53048 * 109.45923 * 180.08585 * 18 16 15 20 20 C 1.53189 * 109.31274 * 178.60547 * 19 18 16 21 21 N 1.46923 * 108.76740 * 54.65552 * 20 19 18 22 22 C 1.34781 * 120.63273 * 126.40544 * 21 20 19 23 23 O 1.21615 * 120.00104 * 179.97438 * 22 21 20 24 24 C 1.43197 * 119.99747 * 359.97438 * 22 21 20 25 25 C 8.92431 * 100.81585 * 122.32022 * 2 1 3 26 26 C 9.70790 * 107.23711 * 117.98247 * 2 1 3 27 27 C 1.52999 * 117.50040 * 282.28699 * 26 25 24 28 28 C 1.53001 * 60.00274 * 252.51272 * 27 26 25 29 29 C 1.46930 * 118.74030 * 306.38110 * 21 20 19 30 30 C 1.53040 * 109.45892 * 60.03609 * 18 16 15 31 31 H 0.96996 * 119.99743 * 0.02562 * 1 2 3 32 32 H 0.96999 * 120.00077 * 359.97438 * 9 7 2 33 33 H 1.08997 * 109.54956 * 56.93787 * 12 10 9 34 34 H 1.09006 * 109.54703 * 177.20665 * 12 10 9 35 35 H 1.08997 * 109.52523 * 183.11917 * 13 12 10 36 36 H 1.09001 * 109.57188 * 62.95470 * 13 12 10 37 37 H 1.08999 * 109.48150 * 297.61965 * 14 13 12 38 38 H 1.09006 * 109.47500 * 177.58824 * 14 13 12 39 39 H 1.08995 * 109.46464 * 300.06012 * 18 16 15 40 40 H 1.09007 * 109.49543 * 298.56757 * 19 18 16 41 41 H 1.08992 * 109.49707 * 58.66325 * 19 18 16 42 42 H 1.09004 * 109.59630 * 294.86957 * 20 19 18 43 43 H 1.09001 * 109.58589 * 174.43798 * 20 19 18 44 44 H 1.09007 * 115.54995 * 67.99680 * 26 25 24 45 45 H 1.08994 * 117.49715 * 0.02562 * 27 26 25 46 46 H 1.09005 * 117.49967 * 145.02476 * 27 26 25 47 47 H 1.09001 * 117.49808 * 252.51609 * 28 27 26 48 48 H 1.08994 * 117.50008 * 107.48557 * 28 27 26 49 49 H 1.09001 * 109.58791 * 293.82765 * 29 21 20 50 50 H 1.08995 * 109.58766 * 173.39713 * 29 21 20 51 51 H 1.09003 * 109.49346 * 301.32822 * 30 18 16 52 52 H 1.08991 * 109.50106 * 61.43173 * 30 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0050 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 1 2.9701 -3.5508 0.5879 12 6 2.4161 -4.0411 -1.4383 13 6 1.1250 -4.2621 -2.2325 14 6 0.2844 -5.3356 -1.5364 15 8 0.0130 -4.9297 -0.1934 16 6 1.1814 -4.7537 0.6104 17 1 1.7414 -5.6881 0.6472 18 6 0.7697 -4.3490 2.0273 19 6 2.0214 -4.1586 2.8871 20 6 1.6069 -3.7198 4.2951 21 7 0.6493 -4.6963 4.8318 22 6 0.8628 -5.2821 6.0267 23 8 0.0623 -6.0885 6.4603 24 6 2.0322 -4.9550 6.7857 25 6 2.9908 -4.6866 7.4077 26 6 4.1929 -4.3504 8.1879 27 6 4.1707 -4.6565 9.6868 28 6 4.0814 -3.2086 9.2003 29 6 -0.5458 -5.0216 4.0415 30 6 -0.1072 -5.4456 2.6362 31 1 -0.4849 0.8400 -0.0004 32 1 0.3555 -2.3881 0.0005 33 1 2.9936 -3.2386 -1.8972 34 1 3.0038 -4.9592 -1.4351 35 1 1.3703 -4.5898 -3.2427 36 1 0.5608 -3.3306 -2.2786 37 1 0.8326 -6.2777 -1.5277 38 1 -0.6551 -5.4665 -2.0735 39 1 0.2093 -3.4149 1.9898 40 1 2.5692 -5.0993 2.9455 41 1 2.6569 -3.3942 2.4402 42 1 1.1388 -2.7365 4.2485 43 1 2.4859 -3.6783 4.9384 44 1 5.1415 -4.4676 7.6639 45 1 3.2662 -5.1072 10.0951 46 1 5.1049 -4.9753 10.1493 47 1 4.9569 -2.5750 9.3426 48 1 3.1181 -2.7065 9.2886 49 1 -1.1894 -4.1445 3.9743 50 1 -1.0873 -5.8391 4.5175 51 1 -0.9870 -5.5971 2.0107 52 1 0.4608 -6.3738 2.6970 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075411321.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:24 Heat of formation + Delta-G solvation = 2.804891 kcal Electronic energy + Delta-G solvation = -31284.996491 eV Core-core repulsion = 27251.697251 eV Total energy + Delta-G solvation = -4033.299240 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -40.28258 -39.22821 -37.90882 -37.09860 -34.63895 -33.69006 -32.80586 -32.32777 -30.93520 -30.47369 -28.36762 -26.24717 -24.85745 -24.05386 -23.26235 -22.82257 -22.81060 -22.37676 -21.13648 -19.65980 -18.86272 -17.98534 -17.28422 -16.99143 -16.26244 -15.76905 -15.53936 -15.37352 -15.16322 -14.72392 -14.26527 -14.22946 -14.07481 -13.63477 -13.48323 -13.27300 -13.13321 -12.91724 -12.78796 -12.39736 -12.30217 -12.15758 -11.95020 -11.89728 -11.72274 -11.54297 -11.11882 -11.03180 -10.91142 -10.82660 -10.64266 -10.47634 -10.43486 -10.24142 -10.19106 -10.17651 -10.11955 -9.89644 -9.85590 -9.49733 -8.94058 -8.77398 -8.60759 -6.92827 -5.76063 -3.04049 1.43420 2.03842 2.88165 3.30582 3.40973 3.46300 3.47508 3.69354 3.81443 4.14471 4.39336 4.55491 4.58722 4.59875 4.90457 4.95108 5.07063 5.21562 5.21751 5.26681 5.40039 5.43295 5.44953 5.47173 5.48859 5.52811 5.59017 5.62538 5.67165 5.67637 5.69699 5.80584 5.86831 5.91582 5.99880 6.05354 6.08743 6.14314 6.15945 6.27173 6.34890 6.42070 6.53971 6.63712 6.70125 6.81161 6.90223 7.01107 7.07000 7.30934 7.66639 7.75764 8.02976 8.42169 9.54288 10.13044 10.50141 11.45772 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.008936 B = 0.003216 C = 0.002632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3132.705298 B = 8704.368742 C =10637.276074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.010 4.010 3 Si 0.901 3.099 4 H -0.288 1.288 5 H -0.292 1.292 6 H -0.287 1.287 7 C -0.238 4.238 8 H 0.066 0.934 9 N -0.710 5.710 10 C 0.148 3.852 11 H 0.055 0.945 12 C -0.140 4.140 13 C -0.148 4.148 14 C 0.068 3.932 15 O -0.373 6.373 16 C 0.094 3.906 17 H 0.046 0.954 18 C -0.073 4.073 19 C -0.124 4.124 20 C 0.109 3.891 21 N -0.594 5.594 22 C 0.631 3.369 23 O -0.534 6.534 24 C -0.205 4.205 25 C -0.062 4.062 26 C -0.063 4.063 27 C -0.162 4.162 28 C -0.159 4.159 29 C 0.113 3.887 30 C -0.125 4.125 31 H 0.255 0.745 32 H 0.389 0.611 33 H 0.064 0.936 34 H 0.041 0.959 35 H 0.054 0.946 36 H 0.083 0.917 37 H 0.037 0.963 38 H 0.084 0.916 39 H 0.098 0.902 40 H 0.059 0.941 41 H 0.093 0.907 42 H 0.081 0.919 43 H 0.081 0.919 44 H 0.137 0.863 45 H 0.100 0.900 46 H 0.107 0.893 47 H 0.109 0.891 48 H 0.101 0.899 49 H 0.075 0.925 50 H 0.092 0.908 51 H 0.085 0.915 52 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.831 -10.990 10.592 16.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.206 4.206 3 Si 0.732 3.268 4 H -0.215 1.215 5 H -0.218 1.218 6 H -0.214 1.214 7 C -0.369 4.369 8 H 0.084 0.916 9 N -0.352 5.352 10 C 0.037 3.963 11 H 0.072 0.928 12 C -0.181 4.181 13 C -0.185 4.185 14 C -0.009 4.009 15 O -0.292 6.292 16 C 0.036 3.964 17 H 0.064 0.936 18 C -0.091 4.091 19 C -0.162 4.162 20 C -0.013 4.013 21 N -0.326 5.326 22 C 0.420 3.580 23 O -0.413 6.413 24 C -0.208 4.208 25 C -0.065 4.065 26 C -0.081 4.081 27 C -0.199 4.199 28 C -0.196 4.196 29 C -0.008 4.008 30 C -0.163 4.163 31 H 0.065 0.935 32 H 0.225 0.775 33 H 0.083 0.917 34 H 0.059 0.941 35 H 0.072 0.928 36 H 0.102 0.898 37 H 0.055 0.945 38 H 0.102 0.898 39 H 0.117 0.883 40 H 0.077 0.923 41 H 0.111 0.889 42 H 0.099 0.901 43 H 0.100 0.900 44 H 0.154 0.846 45 H 0.119 0.881 46 H 0.126 0.874 47 H 0.127 0.873 48 H 0.119 0.881 49 H 0.094 0.906 50 H 0.110 0.890 51 H 0.104 0.896 52 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.289 -11.223 10.879 16.848 hybrid contribution 0.636 1.006 -0.493 1.288 sum 6.925 -10.217 10.386 16.131 Atomic orbital electron populations 1.69655 1.04967 1.25596 1.57434 1.24680 0.95386 0.97367 1.03170 0.86369 0.78567 0.84082 0.77734 1.21492 1.21818 1.21395 1.19144 0.90750 0.84165 1.42833 0.91567 1.42286 1.05947 0.98869 1.88116 1.20839 0.94666 0.87622 0.93160 0.92765 1.22251 0.96557 0.99663 0.99596 1.22029 0.97910 1.00704 0.97894 1.22454 0.99514 0.95474 0.83468 1.87874 1.30713 1.88968 1.21613 1.22348 0.86948 0.96608 0.90496 0.93610 1.21013 0.96336 1.00130 0.91653 1.21916 0.98134 1.02178 0.93946 1.21845 0.92252 0.92000 0.95225 1.48032 1.24330 1.42225 1.17990 1.14743 0.82328 0.80606 0.80345 1.90823 1.46065 1.34483 1.69940 1.20598 0.95972 1.03821 1.00432 1.21298 0.92974 0.95778 0.96446 1.18900 0.93010 1.05972 0.90227 1.23115 1.04380 0.98778 0.93661 1.23109 1.04479 0.91401 1.00569 1.21751 0.86035 1.01907 0.91144 1.21936 1.01134 0.98459 0.94753 0.93545 0.77544 0.91686 0.94075 0.92771 0.89846 0.94488 0.89803 0.88338 0.92250 0.88878 0.90062 0.90019 0.84581 0.88111 0.87440 0.87292 0.88070 0.90644 0.89005 0.89611 0.92231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.90 13.06 55.49 0.72 -26.18 16 2 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 3 Si 0.90 21.60 29.55 -169.99 -5.02 16.57 16 4 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.24 -6.12 9.93 -15.06 -0.15 -6.27 16 8 H 0.07 1.67 7.83 -52.49 -0.41 1.26 16 9 N -0.71 -16.26 3.77 -53.29 -0.20 -16.46 16 10 C 0.15 2.72 2.18 -67.79 -0.15 2.57 16 11 H 0.05 0.99 6.48 -51.93 -0.34 0.66 16 12 C -0.14 -2.41 5.70 -26.55 -0.15 -2.56 16 13 C -0.15 -2.44 5.97 -26.59 -0.16 -2.60 16 14 C 0.07 1.02 6.84 37.21 0.25 1.27 16 15 O -0.37 -6.40 9.32 -35.23 -0.33 -6.73 16 16 C 0.09 1.52 1.91 -26.69 -0.05 1.47 16 17 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 18 C -0.07 -1.12 1.77 -90.58 -0.16 -1.28 16 19 C -0.12 -1.73 5.04 -26.61 -0.13 -1.87 16 20 C 0.11 1.47 6.33 -3.71 -0.02 1.45 16 21 N -0.59 -8.48 2.97 -175.64 -0.52 -9.00 16 22 C 0.63 9.91 7.55 -14.33 -0.11 9.80 16 23 O -0.53 -9.84 16.50 5.26 0.09 -9.75 16 24 C -0.21 -2.87 11.57 -38.84 -0.45 -3.32 16 25 C -0.06 -0.74 13.41 -37.13 -0.50 -1.23 16 26 C -0.06 -0.51 6.22 -93.41 -0.58 -1.09 16 27 C -0.16 -1.06 10.21 -26.73 -0.27 -1.33 16 28 C -0.16 -1.05 10.21 -26.73 -0.27 -1.33 16 29 C 0.11 1.56 6.43 -3.70 -0.02 1.53 16 30 C -0.12 -1.72 5.23 -26.61 -0.14 -1.85 16 31 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 32 H 0.39 9.89 7.13 -40.82 -0.29 9.60 16 33 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 34 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.08 1.67 7.76 -51.93 -0.40 1.26 16 37 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 39 H 0.10 1.85 7.30 -51.93 -0.38 1.47 16 40 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.09 1.43 6.41 -51.93 -0.33 1.10 16 42 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 43 H 0.08 1.01 6.32 -51.93 -0.33 0.68 16 44 H 0.14 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 46 H 0.11 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.11 0.53 8.14 -51.93 -0.42 0.10 16 48 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 49 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 50 H 0.09 1.28 7.00 -51.93 -0.36 0.91 16 51 H 0.09 1.20 7.64 -51.93 -0.40 0.80 16 52 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 412.83 15.07 6.22 6.22 Total: -1.00 -30.65 412.83 -10.92 -41.57 By element: Atomic # 1 Polarization: 19.48 SS G_CDS: -8.72 Total: 10.76 kcal Atomic # 6 Polarization: -3.84 SS G_CDS: -3.16 Total: -7.00 kcal Atomic # 7 Polarization: -51.64 SS G_CDS: 0.00 Total: -51.64 kcal Atomic # 8 Polarization: -16.24 SS G_CDS: -0.24 Total: -16.48 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -30.65 -10.92 -41.57 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075411321.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.377 kcal (2) G-P(sol) polarization free energy of solvation -30.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.572 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds