Wall clock time and date at job start Wed Apr 1 2020 03:56:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 119.99714 * 2 1 4 4 H 1.48498 * 109.47270 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47234 * 299.99789 * 3 2 1 6 6 H 1.48496 * 109.47304 * 59.99959 * 3 2 1 7 7 C 1.37873 * 120.00189 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00335 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99930 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47096 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.47123 * 180.02562 * 10 9 7 12 12 C 1.50701 * 109.46903 * 179.97438 * 11 10 9 13 13 C 1.38358 * 119.85295 * 90.00133 * 12 11 10 14 14 C 1.37960 * 120.14454 * 179.97438 * 13 12 11 15 15 C 1.39575 * 119.85301 * 0.02562 * 14 13 12 16 16 C 1.47845 * 120.14590 * 179.97438 * 15 14 13 17 17 O 1.21551 * 119.99722 * 359.97438 * 16 15 14 18 18 N 1.34772 * 119.99971 * 179.97438 * 16 15 14 19 19 C 1.46507 * 119.99930 * 180.02562 * 18 16 15 20 20 C 1.53002 * 109.46871 * 179.97438 * 19 18 16 21 21 N 1.46908 * 109.46707 * 179.97438 * 20 19 18 22 22 C 1.47024 * 110.99261 * 46.32476 * 21 20 19 23 23 C 1.53103 * 109.24985 * 182.34870 * 22 21 20 24 24 O 1.43012 * 109.29295 * 303.21723 * 23 22 21 25 25 C 1.43011 * 113.74271 * 58.65008 * 24 23 22 26 26 C 1.47018 * 110.99661 * 170.00016 * 21 20 19 27 27 C 1.39578 * 119.71263 * 0.25028 * 15 14 13 28 28 C 1.37965 * 119.85021 * 359.47033 * 27 15 14 29 29 H 0.97002 * 120.00419 * 0.02562 * 1 2 3 30 30 H 1.08999 * 109.46908 * 60.00630 * 9 7 2 31 31 H 1.09001 * 109.47334 * 300.00489 * 9 7 2 32 32 H 1.08999 * 109.47066 * 60.00312 * 10 9 7 33 33 H 1.09001 * 109.47090 * 300.00224 * 10 9 7 34 34 H 1.08999 * 109.47140 * 60.00057 * 11 10 9 35 35 H 1.09001 * 109.47075 * 299.99932 * 11 10 9 36 36 H 1.07998 * 119.92856 * 0.02562 * 13 12 11 37 37 H 1.07999 * 120.07541 * 179.97438 * 14 13 12 38 38 H 0.97000 * 120.00652 * 0.02562 * 18 16 15 39 39 H 1.09002 * 109.46696 * 60.00042 * 19 18 16 40 40 H 1.08999 * 109.46956 * 299.99888 * 19 18 16 41 41 H 1.09003 * 109.46906 * 60.00255 * 20 19 18 42 42 H 1.08999 * 109.47302 * 299.99754 * 20 19 18 43 43 H 1.08998 * 109.47369 * 62.43595 * 22 21 20 44 44 H 1.08998 * 109.54483 * 302.29802 * 22 21 20 45 45 H 1.09002 * 109.50635 * 183.25881 * 23 22 21 46 46 H 1.09003 * 109.50698 * 63.17493 * 23 22 21 47 47 H 1.08997 * 109.50806 * 61.26171 * 25 24 23 48 48 H 1.08997 * 109.50924 * 181.35636 * 25 24 23 49 49 H 1.08994 * 109.50209 * 57.67478 * 26 21 20 50 50 H 1.08997 * 109.50514 * 297.54292 * 26 21 20 51 51 H 1.07998 * 120.07841 * 179.72828 * 27 15 14 52 52 H 1.08001 * 119.92953 * 180.27333 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4804 -4.9871 -0.0012 12 6 2.4598 -6.1325 -0.0018 13 6 2.9074 -6.6566 1.1979 14 6 3.8035 -7.7055 1.2043 15 6 4.2590 -8.2375 -0.0030 16 6 5.2198 -9.3612 -0.0036 17 8 5.6152 -9.8234 1.0488 18 7 5.6573 -9.8731 -1.1711 19 6 6.6090 -10.9870 -1.1717 20 6 6.9395 -11.3745 -2.6145 21 7 7.8942 -12.4910 -2.6151 22 6 7.4826 -13.5365 -1.6669 23 6 8.5329 -14.6505 -1.6566 24 8 8.6979 -15.1566 -2.9839 25 6 9.0996 -14.1647 -3.9326 26 6 8.0546 -13.0463 -3.9669 27 6 3.8079 -7.7004 -1.2097 28 6 2.9073 -6.6553 -1.2021 29 1 -0.4851 0.8400 -0.0004 30 1 0.6242 -2.5567 -0.8903 31 1 0.6247 -2.5570 0.8896 32 1 2.8720 -3.6043 0.8895 33 1 2.8721 -3.6042 -0.8905 34 1 0.8540 -5.0446 -0.8914 35 1 0.8534 -5.0451 0.8886 36 1 2.5538 -6.2442 2.1313 37 1 4.1525 -8.1134 2.1414 38 1 5.3421 -9.5041 -2.0110 39 1 6.1684 -11.8415 -0.6581 40 1 7.5217 -10.6852 -0.6580 41 1 7.3798 -10.5200 -3.1284 42 1 6.0265 -11.6764 -3.1278 43 1 6.5202 -13.9465 -1.9732 44 1 7.3956 -13.1092 -0.6680 45 1 8.2039 -15.4548 -0.9986 46 1 9.4822 -14.2524 -1.2981 47 1 10.0651 -13.7517 -3.6407 48 1 9.1811 -14.6178 -4.9206 49 1 8.3845 -12.2605 -4.6463 50 1 7.1017 -13.4489 -4.3103 51 1 4.1599 -8.1047 -2.1473 52 1 2.5540 -6.2416 -2.1351 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250065708.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:06 Heat of formation + Delta-G solvation = -67.743221 kcal Electronic energy + Delta-G solvation = -28492.871689 eV Core-core repulsion = 24456.513253 eV Total energy + Delta-G solvation = -4036.358436 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.51590 -40.03827 -38.67435 -36.91954 -34.88539 -34.74213 -32.75956 -31.84256 -31.14119 -30.75226 -29.83693 -27.42116 -26.45120 -24.69276 -24.15527 -22.86819 -22.48445 -21.90821 -20.91307 -20.51152 -20.02122 -18.17402 -17.32159 -16.67888 -16.36412 -16.30440 -16.20269 -15.67353 -15.53871 -15.22692 -15.11497 -15.03470 -14.74690 -14.46527 -14.23972 -13.91379 -13.73459 -13.53853 -13.26493 -12.97650 -12.86434 -12.68349 -12.41651 -12.16844 -11.95261 -11.84766 -11.56498 -11.48266 -11.46356 -11.10968 -11.03907 -10.76615 -10.71613 -10.50690 -10.24852 -10.15010 -9.73238 -9.49258 -9.40751 -9.13528 -9.04135 -9.00395 -8.55052 -8.36955 -6.01896 -4.04202 0.81805 1.37013 2.61616 2.75535 3.28403 3.29663 3.37365 3.38557 3.41672 3.83570 4.10635 4.32422 4.34279 4.44655 4.50539 4.53428 4.59416 4.67516 4.72425 4.74154 4.87144 4.91091 4.97670 5.04916 5.09173 5.20503 5.26545 5.32827 5.33905 5.35129 5.38897 5.43156 5.44771 5.69195 5.79094 5.98660 5.98970 6.02278 6.21769 6.26779 6.27424 6.30285 6.36030 6.48117 6.59106 6.81526 6.83152 6.89390 7.09010 7.15759 7.65576 7.79039 7.94888 7.98136 8.40906 9.03206 9.60190 11.09376 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.023209 B = 0.001362 C = 0.001327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.149916 B =20549.262926 C =21090.507209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.520 4.520 8 H 0.055 0.945 9 C 0.020 3.980 10 C -0.103 4.103 11 C -0.091 4.091 12 C -0.032 4.032 13 C -0.128 4.128 14 C -0.055 4.055 15 C -0.158 4.158 16 C 0.566 3.434 17 O -0.539 6.539 18 N -0.731 5.731 19 C 0.117 3.883 20 C 0.044 3.956 21 N -0.532 5.532 22 C 0.006 3.994 23 C 0.063 3.937 24 O -0.386 6.386 25 C 0.063 3.937 26 C 0.017 3.983 27 C -0.084 4.084 28 C -0.128 4.128 29 H 0.260 0.740 30 H 0.016 0.984 31 H 0.016 0.984 32 H 0.050 0.950 33 H 0.049 0.951 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.131 0.869 37 H 0.133 0.867 38 H 0.400 0.600 39 H 0.071 0.929 40 H 0.079 0.921 41 H 0.087 0.913 42 H 0.044 0.956 43 H 0.046 0.954 44 H 0.096 0.904 45 H 0.100 0.900 46 H 0.062 0.938 47 H 0.061 0.939 48 H 0.099 0.901 49 H 0.089 0.911 50 H 0.045 0.955 51 H 0.120 0.880 52 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.480 -29.751 -7.725 33.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.559 4.559 8 H 0.073 0.927 9 C -0.017 4.017 10 C -0.140 4.140 11 C -0.129 4.129 12 C -0.033 4.033 13 C -0.146 4.146 14 C -0.074 4.074 15 C -0.161 4.161 16 C 0.355 3.645 17 O -0.417 6.417 18 N -0.384 5.384 19 C -0.007 4.007 20 C -0.085 4.085 21 N -0.258 5.258 22 C -0.121 4.121 23 C -0.014 4.014 24 O -0.305 6.305 25 C -0.014 4.014 26 C -0.111 4.111 27 C -0.102 4.102 28 C -0.146 4.146 29 H 0.069 0.931 30 H 0.035 0.965 31 H 0.035 0.965 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.149 0.851 37 H 0.150 0.850 38 H 0.236 0.764 39 H 0.089 0.911 40 H 0.097 0.903 41 H 0.105 0.895 42 H 0.062 0.938 43 H 0.064 0.936 44 H 0.114 0.886 45 H 0.118 0.882 46 H 0.080 0.920 47 H 0.079 0.921 48 H 0.117 0.883 49 H 0.107 0.893 50 H 0.064 0.936 51 H 0.138 0.862 52 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 15.066 -30.007 -6.870 34.272 hybrid contribution -0.512 1.240 -0.713 1.519 sum 14.554 -28.767 -7.583 33.119 Atomic orbital electron populations 1.69972 1.06043 1.26483 1.51018 1.25020 0.94839 0.99249 0.95338 0.86556 0.80153 0.83837 0.77590 1.19742 1.21020 1.20996 1.21299 0.93096 0.91090 1.50376 0.92657 1.19131 0.93991 0.91305 0.97288 1.21634 0.99026 0.92695 1.00663 1.20921 0.96200 0.92754 1.02984 1.20502 0.95281 0.94724 0.92761 1.21139 0.98308 0.96731 0.98442 1.21217 0.94407 0.94369 0.97370 1.19709 1.02150 0.99415 0.94803 1.18343 0.80544 0.82378 0.83262 1.90760 1.58314 1.61459 1.31178 1.45795 1.47208 1.36411 1.09002 1.21428 0.93462 0.89463 0.96346 1.22307 0.94724 0.94903 0.96518 1.62225 1.47216 1.08894 1.07444 1.22989 0.97982 0.92962 0.98216 1.22693 0.98273 0.96088 0.84323 1.88000 1.89204 1.34863 1.18420 1.22667 0.96567 0.88676 0.93454 1.22823 0.99657 0.98274 0.90318 1.21173 0.96551 0.96153 0.96356 1.21051 0.98354 0.96860 0.98379 0.93067 0.96544 0.96526 0.93158 0.93223 0.91010 0.90956 0.85115 0.84954 0.76414 0.91123 0.90303 0.89467 0.93777 0.93592 0.88619 0.88217 0.92009 0.92058 0.88268 0.89286 0.93642 0.86205 0.85265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.71 13.29 55.43 0.74 -25.97 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 4 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.52 -14.63 9.11 -34.44 -0.31 -14.94 16 8 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 9 C 0.02 0.50 4.97 -27.88 -0.14 0.36 16 10 C -0.10 -2.03 5.14 -26.73 -0.14 -2.17 16 11 C -0.09 -1.45 5.34 -27.88 -0.15 -1.59 16 12 C -0.03 -0.45 5.14 -104.53 -0.54 -0.99 16 13 C -0.13 -1.70 9.68 -39.64 -0.38 -2.09 16 14 C -0.05 -0.71 9.60 -39.18 -0.38 -1.09 16 15 C -0.16 -1.92 5.87 -104.97 -0.62 -2.53 16 16 C 0.57 6.88 7.77 -12.33 -0.10 6.78 16 17 O -0.54 -8.32 16.35 5.32 0.09 -8.24 16 18 N -0.73 -6.17 5.51 -61.25 -0.34 -6.51 16 19 C 0.12 0.88 4.94 -4.04 -0.02 0.86 16 20 C 0.04 0.24 5.39 -3.82 -0.02 0.22 16 21 N -0.53 -3.31 4.88 -234.29 -1.14 -4.45 16 22 C 0.01 0.04 4.94 -3.70 -0.02 0.02 16 23 C 0.06 0.38 7.01 37.21 0.26 0.64 16 24 O -0.39 -2.95 10.83 -35.23 -0.38 -3.33 16 25 C 0.06 0.34 7.01 37.21 0.26 0.60 16 26 C 0.02 0.09 5.63 -3.71 -0.02 0.07 16 27 C -0.08 -0.88 9.54 -39.18 -0.37 -1.26 16 28 C -0.13 -1.56 9.68 -39.64 -0.38 -1.94 16 29 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 30 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.07 1.09 8.08 -51.93 -0.42 0.67 16 35 H 0.07 1.12 8.08 -51.93 -0.42 0.70 16 36 H 0.13 1.59 8.06 -52.49 -0.42 1.17 16 37 H 0.13 1.66 7.65 -52.49 -0.40 1.26 16 38 H 0.40 2.39 6.51 -40.82 -0.27 2.12 16 39 H 0.07 0.57 6.28 -51.93 -0.33 0.25 16 40 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.04 0.23 8.08 -51.93 -0.42 -0.19 16 43 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 44 H 0.10 0.57 6.05 -51.93 -0.31 0.25 16 45 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 46 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 47 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 48 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 49 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 50 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 51 H 0.12 0.85 6.41 -52.49 -0.34 0.51 16 52 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 LS Contribution 419.07 15.07 6.32 6.32 Total: -1.00 -33.68 419.07 -11.69 -45.37 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: -8.79 Total: -2.19 kcal Atomic # 6 Polarization: -14.36 SS G_CDS: -3.16 Total: -17.52 kcal Atomic # 7 Polarization: -36.19 SS G_CDS: -0.74 Total: -36.94 kcal Atomic # 8 Polarization: -11.28 SS G_CDS: -0.29 Total: -11.57 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 6.32 Total: 6.32 kcal Total: -33.68 -11.69 -45.37 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250065708.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.376 kcal (2) G-P(sol) polarization free energy of solvation -33.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds