Wall clock time and date at job start Wed Apr 1 2020 03:58:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35909 * 117.00176 * 2 1 4 4 C 1.38755 * 120.05184 * 0.02562 * 3 2 1 5 5 C 1.38123 * 119.94445 * 179.97438 * 4 3 2 6 6 C 1.38294 * 120.05005 * 359.97438 * 5 4 3 7 7 C 1.50700 * 119.93924 * 180.02562 * 6 5 4 8 8 C 1.38250 * 120.11383 * 359.75070 * 6 5 4 9 9 C 1.38164 * 120.05440 * 0.50456 * 8 6 5 10 10 C 1.50698 * 120.02779 * 179.77423 * 9 8 6 11 11 C 1.50707 * 109.46749 * 264.72175 * 10 9 8 12 12 O 1.21275 * 120.00016 * 359.97438 * 11 10 9 13 13 N 1.34773 * 119.99433 * 179.97438 * 11 10 9 14 14 C 1.46506 * 119.99358 * 179.97438 * 13 11 10 15 15 C 1.53004 * 109.46678 * 179.97438 * 14 13 11 16 16 H 1.08999 * 110.64073 * 51.86599 * 15 14 13 17 17 C 1.54329 * 110.85248 * 288.69107 * 15 14 13 18 18 N 1.47019 * 107.26641 * 219.67101 * 17 15 14 19 19 C 1.36945 * 125.64869 * 178.84835 * 18 17 15 20 20 H 1.08000 * 119.99441 * 359.72211 * 19 18 17 21 21 C 1.38811 * 120.00031 * 179.72068 * 19 18 17 22 22 N 1.31619 * 120.00283 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99811 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47177 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.46857 * 120.00139 * 23 21 19 26 26 H 1.48492 * 109.47220 * 239.99987 * 23 21 19 27 27 C 1.47426 * 108.70491 * 358.59050 * 18 17 15 28 28 C 1.54910 * 104.83073 * 24.35098 * 27 18 17 29 29 H 1.09005 * 111.00236 * 81.10632 * 28 27 18 30 30 C 1.52999 * 111.00400 * 204.91488 * 28 27 18 31 31 H 1.08999 * 109.46957 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.46603 * 299.99944 * 1 2 3 33 33 H 1.08999 * 109.47240 * 60.00008 * 1 2 3 34 34 H 1.08004 * 120.02635 * 359.97438 * 4 3 2 35 35 H 1.07992 * 119.97419 * 180.02562 * 5 4 3 36 36 H 1.08992 * 109.47173 * 90.00361 * 7 6 5 37 37 H 1.09007 * 109.47019 * 210.00214 * 7 6 5 38 38 H 1.08994 * 109.47225 * 329.99977 * 7 6 5 39 39 H 1.07995 * 119.96867 * 180.25280 * 8 6 5 40 40 H 1.08993 * 109.47294 * 144.72516 * 10 9 8 41 41 H 1.09000 * 109.47116 * 24.71874 * 10 9 8 42 42 H 0.97002 * 120.00830 * 0.02562 * 13 11 10 43 43 H 1.08993 * 109.46929 * 60.00488 * 14 13 11 44 44 H 1.09000 * 109.47155 * 300.00044 * 14 13 11 45 45 H 1.09003 * 109.99010 * 100.19995 * 17 15 14 46 46 H 1.08999 * 109.78366 * 339.03505 * 17 15 14 47 47 H 0.96998 * 120.00243 * 179.97438 * 22 21 19 48 48 H 1.09002 * 110.36613 * 143.19006 * 27 18 17 49 49 H 1.08998 * 110.36249 * 265.40535 * 27 18 17 50 50 H 1.09003 * 109.46828 * 58.55105 * 30 28 27 51 51 H 1.09002 * 109.47003 * 178.54292 * 30 28 27 52 52 H 1.09001 * 109.47186 * 298.55016 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9208 3.6048 0.0011 6 6 3.3020 3.6758 0.0016 7 6 3.9861 5.0185 0.0028 8 6 4.0560 2.5171 0.0068 9 6 3.4312 1.2848 0.0010 10 6 4.2537 0.0221 0.0015 11 6 4.4247 -0.4666 -1.4139 12 8 3.9272 0.1496 -2.3323 13 7 5.1305 -1.5883 -1.6587 14 6 5.2962 -2.0636 -3.0346 15 6 6.1326 -3.3448 -3.0342 16 1 5.7195 -4.0731 -2.3363 17 6 7.6063 -3.0387 -2.6934 18 7 8.4395 -3.8867 -3.5585 19 6 9.8086 -3.9003 -3.5828 20 1 10.3668 -3.2454 -2.9303 21 6 10.4789 -4.7560 -4.4462 22 7 9.7986 -5.5539 -5.2418 23 14 12.3465 -4.7741 -4.4800 24 1 12.8689 -3.7907 -3.4975 25 1 12.8347 -6.1317 -4.1281 26 1 12.8205 -4.4149 -5.8406 27 6 7.5569 -4.7242 -4.3909 28 6 6.2212 -3.9430 -4.4631 29 1 6.2695 -3.1551 -5.2148 30 6 5.0481 -4.8864 -4.7365 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3632 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 0.2128 2.3203 0.0005 35 1 1.3340 4.5114 0.0019 36 1 4.1507 5.3415 1.0306 37 1 4.9442 4.9386 -0.5108 38 1 3.3583 5.7466 -0.5108 39 1 5.1344 2.5752 0.0113 40 1 3.7465 -0.7417 0.5908 41 1 5.2323 0.2262 0.4361 42 1 5.5282 -2.0813 -0.9241 43 1 5.8028 -1.2997 -3.6243 44 1 4.3176 -2.2682 -3.4687 45 1 7.8027 -3.2710 -1.6466 46 1 7.8194 -1.9877 -2.8882 47 1 10.2669 -6.1515 -5.8454 48 1 7.9795 -4.8460 -5.3883 49 1 7.4047 -5.6967 -3.9228 50 1 4.9954 -5.6382 -3.9490 51 1 4.1198 -4.3156 -4.7565 52 1 5.1935 -5.3776 -5.6986 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001102129708.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:58:10 Heat of formation + Delta-G solvation = -38.106116 kcal Electronic energy + Delta-G solvation = -30223.869729 eV Core-core repulsion = 26188.796455 eV Total energy + Delta-G solvation = -4035.073274 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.64941 -39.36747 -37.98868 -37.75106 -34.56580 -33.43907 -32.88545 -31.79784 -30.73671 -29.60507 -28.12747 -27.80995 -26.08354 -25.88426 -24.92274 -22.92000 -22.21649 -21.27615 -20.29234 -19.80980 -19.18069 -18.19277 -17.08174 -16.71961 -16.65313 -16.02938 -15.84639 -15.25750 -15.09240 -14.77847 -14.54088 -14.26487 -14.06658 -13.89467 -13.73337 -13.45203 -13.31704 -13.17940 -12.81664 -12.60556 -12.46117 -12.31673 -12.17840 -11.99281 -11.87247 -11.53538 -11.52635 -11.33910 -11.12060 -11.06593 -11.00550 -10.85371 -10.80448 -10.18658 -10.00501 -9.90688 -9.84865 -9.69172 -9.36512 -8.99328 -8.83597 -8.64393 -8.15503 -6.81756 -5.64423 -3.06060 1.12965 1.25787 2.82359 3.08379 3.27753 3.40069 3.45483 3.48030 3.67923 4.44721 4.49310 4.56666 4.66907 4.78755 4.89442 4.95909 5.04882 5.07709 5.13409 5.21825 5.23464 5.28951 5.33255 5.34836 5.41277 5.43472 5.51728 5.52389 5.61600 5.71969 5.81041 5.88570 5.92422 6.10990 6.11662 6.18523 6.20218 6.24066 6.31013 6.42560 6.53484 6.57285 6.61419 6.63012 6.65797 6.83736 6.98276 7.19568 7.55510 7.64602 7.67712 7.87918 8.37776 8.40294 9.23285 9.84217 10.49286 11.39404 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.015783 B = 0.002123 C = 0.001934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1773.604795 B =13186.935288 C =14473.314811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.313 6.313 3 C 0.138 3.862 4 C -0.205 4.205 5 C -0.082 4.082 6 C -0.124 4.124 7 C -0.108 4.108 8 C -0.069 4.069 9 C -0.090 4.090 10 C -0.095 4.095 11 C 0.516 3.484 12 O -0.537 6.537 13 N -0.727 5.727 14 C 0.134 3.866 15 C -0.109 4.109 16 H 0.076 0.924 17 C 0.142 3.858 18 N -0.606 5.606 19 C -0.221 4.221 20 H 0.077 0.923 21 C -0.013 4.013 22 N -0.922 5.922 23 Si 0.914 3.086 24 H -0.280 1.280 25 H -0.291 1.291 26 H -0.290 1.290 27 C 0.159 3.841 28 C -0.111 4.111 29 H 0.071 0.929 30 C -0.134 4.134 31 H 0.099 0.901 32 H 0.053 0.947 33 H 0.054 0.946 34 H 0.126 0.874 35 H 0.122 0.878 36 H 0.066 0.934 37 H 0.065 0.935 38 H 0.063 0.937 39 H 0.128 0.872 40 H 0.104 0.896 41 H 0.101 0.899 42 H 0.400 0.600 43 H 0.067 0.933 44 H 0.063 0.937 45 H 0.018 0.982 46 H 0.024 0.976 47 H 0.251 0.749 48 H 0.106 0.894 49 H 0.013 0.987 50 H 0.050 0.950 51 H 0.044 0.956 52 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.075 14.391 13.129 27.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.226 6.226 3 C 0.093 3.907 4 C -0.224 4.224 5 C -0.101 4.101 6 C -0.124 4.124 7 C -0.165 4.165 8 C -0.087 4.087 9 C -0.091 4.091 10 C -0.135 4.135 11 C 0.302 3.698 12 O -0.414 6.414 13 N -0.379 5.379 14 C 0.011 3.989 15 C -0.128 4.128 16 H 0.094 0.906 17 C 0.016 3.984 18 N -0.331 5.331 19 C -0.349 4.349 20 H 0.095 0.905 21 C -0.208 4.208 22 N -0.571 5.571 23 Si 0.745 3.255 24 H -0.206 1.206 25 H -0.218 1.218 26 H -0.217 1.217 27 C 0.034 3.966 28 C -0.131 4.131 29 H 0.089 0.911 30 C -0.192 4.192 31 H 0.117 0.883 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.144 0.856 35 H 0.140 0.860 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.146 0.854 40 H 0.122 0.878 41 H 0.120 0.880 42 H 0.234 0.766 43 H 0.085 0.915 44 H 0.082 0.918 45 H 0.036 0.964 46 H 0.042 0.958 47 H 0.062 0.938 48 H 0.124 0.876 49 H 0.031 0.969 50 H 0.069 0.931 51 H 0.063 0.937 52 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -19.162 14.536 12.347 27.036 hybrid contribution 0.838 -0.245 0.361 0.945 sum -18.324 14.291 12.707 26.486 Atomic orbital electron populations 1.23034 0.78538 1.03911 1.01152 1.86066 1.21209 1.26852 1.88509 1.18742 0.91629 0.84239 0.96137 1.21140 0.99805 0.92297 1.09154 1.20770 0.93930 0.96882 0.98481 1.19759 0.93612 0.95429 1.03645 1.20708 1.00435 0.93381 1.01992 1.20741 0.99691 0.90527 0.97789 1.18601 0.90211 0.94579 1.05685 1.20493 1.01269 0.96320 0.95432 1.20434 0.78051 0.80422 0.90935 1.90697 1.48010 1.56400 1.46294 1.46077 1.54739 1.27024 1.10053 1.21411 0.99636 0.95677 0.82195 1.22495 0.95881 0.95308 0.99147 0.90594 1.21336 0.88592 0.94606 0.93903 1.44509 1.01669 1.44039 1.42895 1.19122 0.80164 1.17884 1.17752 0.90502 1.24791 0.98181 0.98725 0.99088 1.69808 1.32862 1.27263 1.27129 0.86004 0.84962 0.77245 0.77330 1.20554 1.21788 1.21742 1.21976 0.84947 0.90382 0.99281 1.22593 0.97833 0.98413 0.94292 0.91076 1.21647 0.97006 0.98978 1.01543 0.88290 0.92815 0.92687 0.85587 0.86004 0.91507 0.91559 0.91786 0.85426 0.87756 0.88038 0.76587 0.91476 0.91835 0.96407 0.95827 0.93798 0.87633 0.96936 0.93059 0.93704 0.92610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.21 16 2 O -0.31 -3.60 9.63 -19.45 -0.19 -3.79 16 3 C 0.14 1.65 6.66 -39.22 -0.26 1.39 16 4 C -0.21 -2.10 9.04 -39.43 -0.36 -2.46 16 5 C -0.08 -0.79 9.69 -39.60 -0.38 -1.18 16 6 C -0.12 -1.25 5.88 -104.60 -0.62 -1.86 16 7 C -0.11 -0.81 10.01 36.01 0.36 -0.45 16 8 C -0.07 -0.76 9.33 -39.60 -0.37 -1.13 16 9 C -0.09 -1.08 4.39 -104.48 -0.46 -1.54 16 10 C -0.10 -1.03 5.55 -29.03 -0.16 -1.19 16 11 C 0.52 7.36 7.82 -10.98 -0.09 7.28 16 12 O -0.54 -9.87 16.03 5.56 0.09 -9.78 16 13 N -0.73 -9.69 5.47 -60.29 -0.33 -10.02 16 14 C 0.13 2.07 5.02 -4.04 -0.02 2.05 16 15 C -0.11 -1.84 2.42 -88.78 -0.22 -2.06 16 16 H 0.08 1.21 8.01 -51.93 -0.42 0.79 16 17 C 0.14 2.90 6.76 -3.06 -0.02 2.88 16 18 N -0.61 -15.50 3.39 -170.07 -0.58 -16.08 16 19 C -0.22 -6.18 10.27 -15.06 -0.15 -6.33 16 20 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 21 C -0.01 -0.35 5.49 -17.43 -0.10 -0.45 16 22 N -0.92 -26.93 10.09 55.49 0.56 -26.37 16 23 Si 0.91 22.15 29.55 -169.99 -5.02 17.13 16 24 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 25 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 26 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 27 C 0.16 3.83 5.35 -2.53 -0.01 3.82 16 28 C -0.11 -2.08 3.09 -88.47 -0.27 -2.35 16 29 H 0.07 1.37 8.05 -51.93 -0.42 0.95 16 30 C -0.13 -2.10 9.29 37.16 0.35 -1.76 16 31 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.05 0.31 7.66 -51.93 -0.40 -0.09 16 33 H 0.05 0.39 7.66 -51.93 -0.40 -0.01 16 34 H 0.13 0.99 6.30 -52.48 -0.33 0.66 16 35 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 36 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 38 H 0.06 0.42 8.08 -51.93 -0.42 0.00 16 39 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 40 H 0.10 0.99 7.69 -51.93 -0.40 0.59 16 41 H 0.10 0.85 8.05 -51.93 -0.42 0.43 16 42 H 0.40 4.40 8.47 -40.82 -0.35 4.06 16 43 H 0.07 1.16 7.94 -51.93 -0.41 0.74 16 44 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 45 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 46 H 0.02 0.50 7.69 -51.93 -0.40 0.10 16 47 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 48 H 0.11 2.89 5.87 -51.93 -0.31 2.58 16 49 H 0.01 0.32 8.04 -51.93 -0.42 -0.09 16 50 H 0.05 0.78 8.11 -51.93 -0.42 0.36 16 51 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 52 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 418.20 15.07 6.30 6.30 Total: -1.00 -34.40 418.20 -9.80 -44.20 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -8.85 Total: 2.53 kcal Atomic # 6 Polarization: -2.34 SS G_CDS: -1.79 Total: -4.13 kcal Atomic # 7 Polarization: -52.11 SS G_CDS: -0.35 Total: -52.46 kcal Atomic # 8 Polarization: -13.47 SS G_CDS: -0.10 Total: -13.57 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 6.30 Total: 6.30 kcal Total: -34.40 -9.80 -44.20 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102129708.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.097 kcal (2) G-P(sol) polarization free energy of solvation -34.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds